BAC Information

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BAC

Clone NameB6Ng01-316F04
Chromosome7 (Build37)
Map Location 125,364,820 - 125,527,821
singlet/doubletdoublet
Overlap gene2610207I05Rik, LOC100043339, Syt17
Upstream geneXylt1, LOC669758, Rps15a, Arl6ip1
Downstream geneLOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316F04.bB6Ng01-316F04.g
ACCGA106747GA106748
length9091,151
definitionB6Ng01-316F04.b B6Ng01-316F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,364,820 - 125,365,729)(125,526,655 - 125,527,821)
sequence
gaattcaccataagtgggttgttgctgggcagtggtggcgcacaccttta
atcccagcgcttaggaggcagaggcaggctgatttctgagttcgaggcca
acctggtctacagagtgagttccaggacagccagggctacacagagaaac
cctgtctcaaaaaatcaaaaccaaaagaaaaaaaagaaaaaaaaaagtgg
ttcgttgaaggcaggtccttgggtccctgactccttcctatcacactctt
ctactttggccaccatacctgccatgatggactgagacactctgaaacca
tgggccaaaataaatccttcttcccttgagctgcttttgtcaaatgtcta
ccacggcagtgagtagagtaacatctaccattgcattccatctttaccac
aaccctcttaattgcattttatgggttgggtgactgaggttcccagttgt
actagtgactacaaactttctccctgtaaatccaaattcacctccatgta
gccttttctatcttcattagataaataaagctctttcctagagaagtcac
ctagaccctaagtttcacctgtctcccaaacacttttcccttctgtaggc
cagactcttccacttaactactctcacaatacctgcaagagcacatgaac
aacactcctgtacaagtaactggattcctttccttctaaatatctagtaa
gggtcacatatggaatcctagctcttaggaggtggaggtaggaggatcaa
gaattgaaggacagcctcacctacatagcaatttgaagagcagactaggt
cacatgagaccctgtcttgcacattccatctcatcagttattgtccagat
tcttttttttaaagatatatatatatatatatatatatatatatatatat
atatatata
gaattctctatgtgaaccccacaagggagaatggaggctcactactagca
cacaagcttgtttaggctctagatttgaggtggtttgtttgataatcagt
acccctcccgggatctagcctgccgttgctgggaccatgctgggcgaatc
tgtgatagttcccattctttagcctttcatgtatagcacaggcacagcct
gcttccccattagtgaaacagcacacttaaactatctacactcagataaa
gaatgaggctgaacttggccaggaagataaatcaactcaaccatctcatt
aggtttcaaagacactaactaattaagcttgcattggaattaacagagaa
tccttctgagagacagatgtgacaaggcatgaaagaaactaccctgcctt
cactgtgagagagaggaagtgttttttaaataaggtcaatggacagaaat
ataggatcaaagcaataatacatcattaccactgtgtgctgcacacatca
ttccatctccatcacgtattaactttcaagacaaagtgagaatagtctca
actaaatgaggaaagagaggcataagagagtttaccttatgtcataggta
ctttttctgcttgctgtgataagatgacctgacaagggctggagagatgg
ctcagcggttaagagcactgactgctcttcctaaggttctgagttcaaat
ctaaacaacgacatggtggctcacaaccatccgtaatgagatctgatgcc
ctcttctggtgtgtctgaaaggcaactacagtgtacttacatataacaat
aaataaatgaaggcaactacagtgtacttacatataacaataaataaatc
tttgggccagagagagcgggaccagagtgagaagaaaaaataataataaa
agataaaataaaagatgacttgacaaagcaacctaaaaaaaaaaaaaaaa
aggaaagccaggcatggtggcacatgccctttaatcccagcactcagagc
agagcagcgatttcaaggtttgagcagctgtttataaagtaagttccaga
cacaaggctatacagagaaacctcggttctgtaaaaacaaaaaccaaatg
cagagacttattctgctgacatcctgttacagtccatctcatgttaggaa
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_125364820_125365729
seq2: B6Ng01-316F04.b_45_953

seq1  GAATTCACCATAAGTGGGTTGTTGCTGGGCAGTGGTGGCGCACACCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATAAGTGGGTTGTTGCTGGGCAGTGGTGGCGCACACCTTTA  50

seq1  ATCCCAGCGCTTAGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCGCTTAGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCA  100

seq1  ACCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC  150

seq1  CCTGTCTCAAAAAATCAAAACCAAAAGAAAAAAAAGAAAAAAAAAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCAAAAAATCAAAACCAAAAGAAAAAAAAGAAAAAAAAAAGTGG  200

seq1  TTCGTTGAAGGCAGGTCCTTGGGTCCCTGACTCCTTCCTATCACACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTGAAGGCAGGTCCTTGGGTCCCTGACTCCTTCCTATCACACTCTT  250

seq1  CTACTTTGGCCACCATACCTGCCATGATGGACTGAGACACTCTGAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGGCCACCATACCTGCCATGATGGACTGAGACACTCTGAAACCA  300

seq1  TGGGCCAAAATAAATCCTTCTTCCCTTGAGCTGCTTTTGTCAAATGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAAAATAAATCCTTCTTCCCTTGAGCTGCTTTTGTCAAATGTCTA  350

seq1  CCACGGCAGTGAGTAGAGTAACATCTACCATTGCATTCCATCTTTACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGCAGTGAGTAGAGTAACATCTACCATTGCATTCCATCTTTACCAC  400

seq1  AACCCTCTTAATTGCATTTTATGGGTTGGGTGACTGAGGTTCCCAGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTTAATTGCATTTTATGGGTTGGGTGACTGAGGTTCCCAGTTGT  450

seq1  ACTAGTGACTACAAACTTTCTCCCTGTAAATCCAAATTCACCTCCATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGACTACAAACTTTCTCCCTGTAAATCCAAATTCACCTCCATGTA  500

seq1  GCCTTTTCTATCTTCATTAGATAAATAAAGCTCTTTCCTAGAGAAGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCTATCTTCATTAGATAAATAAAGCTCTTTCCTAGAGAAGTCAC  550

seq1  CTAGACCCTAAGTTTCACCTGTCTCCCAAACACTTTTCCCTTCTGTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCCTAAGTTTCACCTGTCTCCCAAACACTTTTCCCTTCTGTAGGC  600

seq1  CAGACTCTTCCACTTAACTACTCTCACAATACCTGCAAGAGCACATGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTTCCACTTAACTACTCTCACAATACCTGCAAGAGCACATGAAC  650

seq1  AACACTCCTGTACAAGTAACTGGATTCCTTTCCTTCTAAATATCTAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCCTGTACAAGTAACTGGATTCCTTTCCTTCTAAATATCTAGTAA  700

seq1  GGGTCACATATGGAATCCTAGCTCTTAGGAGGTGGAGGTAGGAGGATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACATATGGAATCCTAGCTCTTAGGAGGTGGAGGTAGGAGGATCAA  750

seq1  GAATTGAAGGACAGCCTCACCTACATAGCAATTTGAAGAGCAGACTAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAAGGACAGCCTCACCTACATAGCAATTTGAAGAGCAGACTAGGT  800

seq1  CACATGAGACCCTGTCTTGCACATTCCATCTCATCAGTTATTGTCCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGACCCTGTCTTGCACATTCCATCTCATCAGTTATTGTCCAGAT  850

seq1  TCTTTTTTTTAAAGATTATATATATATATATATATATATATATATATATA  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTAAAGA-TATATATATATATATATATATATATATATATATA  899

seq1  TATATATATA  910
      ||||||||||
seq2  TATATATATA  909

seq1: chr7_125526655_125527821
seq2: B6Ng01-316F04.g_67_1217 (reverse)

seq1  CTTCCTACCAT--GATGGACTGTACCAGAATTGTCAGCCAGAATAAATTC  48
      ||||||| |||  ||||||||||| ||| | |||||| ||||||||    
seq2  CTTCCTAACATGAGATGGACTGTAACAGGA-TGTCAG-CAGAATAA---G  45

seq1  TCTCTCCTTTTGTTTTTTGTTTTTTTCCAGA--CGGGGTTTCTCTGTATA  96
      ||||| | |||| ||||||  ||||| ||||  || ||||||||||||||
seq2  TCTCTGCATTTGGTTTTTG--TTTTTACAGAACCGAGGTTTCTCTGTATA  93

seq1  GCCCTGGTTGTCCTGGAACTTACTTTATAAACCAGGCTGGCCTCAAA-CT  145
      ||| ||  ||| ||||||||||||||||||||   ||||  |||||| ||
seq2  GCCTTG--TGT-CTGGAACTTACTTTATAAAC--AGCTG--CTCAAACCT  136

seq1  TGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAA-GGCATGTG  194
      |||||||   ||| ||||||   |||||||||||||||||| ||||||||
seq2  TGAAATC--GCTG-CTCTGC--TCTGAGTGCTGGGATTAAAGGGCATGTG  181

seq1  CCACCATGCCTGGCTTTCCTTTTTTTTTTTTTTTTTTAGGTTGCTTTTGT  244
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  CCACCATGCCTGGCTTTCC-TTTTTTTTTTTTTTTTTAGGTTGC-TTTGT  229

seq1  CAAGTCATCTTTTATTTTTATCTTTTATTATTTATTTTTTCTTCTCACTC  294
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  CAAGTCATCTTTTA-TTTTATCTTTTATTA-TTATTTTTTCTTCTCACTC  277

seq1  TGGTCCCGCTCTCTCTGGCCCAAAGATTTATTTATTGTTATATGTAAGTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCGCTCTCTCTGGCCCAAAGATTTATTTATTGTTATATGTAAGTA  327

seq1  CACTGTAGTTGCCTTCATTTATTTATTGTTATATGTAAGTACACTGTAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGTTGCCTTCATTTATTTATTGTTATATGTAAGTACACTGTAGT  377

seq1  TGCC-TTCAGACACACCAGAAGAGGGCATCAGATCTCATTACGGATGGTT  443
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACGGATGGTT  427

seq1  GTGAGCCACCATGTCGTTGTTTAGATTTGAACTCAGAACCTTAGGAAGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACCATGTCGTTGTTTAGATTTGAACTCAGAACCTTAGGAAGAG  477

seq1  CAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTTGTCAGGTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTTGTCAGGTCA  527

seq1  TCTTATCACAGCAAGCAGAAAAAGTACCTATGACATAAGGTAAACTCTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCACAGCAAGCAGAAAAAGTACCTATGACATAAGGTAAACTCTCT  577

seq1  TATGCCTCTCTTTCCTCATTTAGTTGAGACTATTCTCACTTTGTCTTGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTCTCTTTCCTCATTTAGTTGAGACTATTCTCACTTTGTCTTGAA  627

seq1  AGTTAATACGTGATGGAGATGGAATGATGTGTGCAGCACACAGTGGTAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATACGTGATGGAGATGGAATGATGTGTGCAGCACACAGTGGTAAT  677

seq1  GATGTATTATTGCTTTGATCCTATATTTCTGTCCATTGACCTTATTTAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTATTGCTTTGATCCTATATTTCTGTCCATTGACCTTATTTAAA  727

seq1  AAACACTTCCTCTCTCTCACAGTGAAGGCAGGGTAGTTTCTTTCATGCCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTCCTCTCTCTCACAGTGAAGGCAGGGTAGTTTCTTTCATGCCT  777

seq1  TGTCACATCTGTCTCTCAGAAGGATTCTCTGTTAATTCCAATGCAAGCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATCTGTCTCTCAGAAGGATTCTCTGTTAATTCCAATGCAAGCTT  827

seq1  AATTAGTTAGTGTCTTTGAAACCTAATGAGATGGTTGAGTTGATTTATCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTAGTGTCTTTGAAACCTAATGAGATGGTTGAGTTGATTTATCT  877

seq1  TCCTGGCCAAGTTCAGCCTCATTCTTTATCTGAGTGTAGATAGTTTAAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCAAGTTCAGCCTCATTCTTTATCTGAGTGTAGATAGTTTAAGT  927

seq1  GTGCTGTTTCACTAATGGGGAAGCAGGCTGTGCCTGTGCTATACATGAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTTCACTAATGGGGAAGCAGGCTGTGCCTGTGCTATACATGAAA  977

seq1  GGCTAAAGAATGGGAACTATCACAGATTCGCCCAGCATGGTCCCAGCAAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGAATGGGAACTATCACAGATTCGCCCAGCATGGTCCCAGCAAC  1027

seq1  GGCAGGCTAGATCCCGGGAGGGGTACTGATTATCAAACAAACCACCTCAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTAGATCCCGGGAGGGGTACTGATTATCAAACAAACCACCTCAA  1077

seq1  ATCTAGAGCCTAAACAAGCTTGTGTGCTAGTAGTGAGCCTCCATTCTCCC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGCCTAAACAAGCTTGTGTGCTAGTAGTGAGCCTCCATTCTCCC  1127

seq1  TTGTGGGGTTCACATAGAGAATTC  1167
      ||||||||||||||||||||||||
seq2  TTGTGGGGTTCACATAGAGAATTC  1151