BAC Information

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BAC

Clone NameB6Ng01-316L09
Chromosome7 (Build37)
Map Location 17,440,646 - 17,441,764
singlet/doubletsinglet
Overlap genePrkd2
Upstream geneCrx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4
Downstream geneDact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316L09.bB6Ng01-316L09.g
ACCGA107038GA107039
length1,0421,114
definitionB6Ng01-316L09.b B6Ng01-316L09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcggaa
aggacccagatgtagctgtctcttgtgagactatgcccggggcctagcaa
acacagaagtggatgctcacagtcagctaatggatggatcacagggctcc
caaatggaggagctagagaaagtacccaaggagctaaagggatcttcaac
cctatagtggaacaacattatgaactaccagtacccctgagc
gaattcaactcagatcttcttcagggcaagtgctcttaactgccgagcca
tctgtgcagcccaccaagtcaggaggaagggggtcctgcgccgactgact
taccacattctcttggatctgactgttggacacggagatactcagagacg
cttgtcctaggaagaggggaagagagaagtgagcgagctctgggctcagc
acaggtgtcacctgtgcctccaaaggctacacttggaaccttagtttcgt
cgtctgggaaatggaatacaagaaccactacggagctgaccagttgtacc
agaggctccatatgggacctcacgattctatgcctggcattttacccgct
atcctcagtgccgtagaaagaaggcagcctgccttcctccaggcttgttc
cttatccaggatgtctttcagcctctttagtaccacctctagcaacccag
gtagggacttactgtgcggtgtgtgccccggggcactgggcgcatcttgg
aggataacgggcatcagtgcctggcggatggctgtctcccaaccccgaac
ggcctctgttccctgtccacttggccctcccggggccccgccaggggttt
cgcccacaaagtaggtgacattggccgtgatgatctcgaagcagtgtggg
ttggtgcccgggggtacgaggctgaagttctgagccggttccaccgcaag
gatttcagacagcgggatttcctggcaaggggtggaactgtcagtgtagg
caaacctattgggccatccctgcagctcccctgttctcagagtcaataag
gacagacctggtctacgtggacaggtggggaaaggcctcccagccgtacc
catgctaaccatgagagcagttagctagccaggagactatggagcagcac
agaagaagctgctgtgcccatcacatggacagcgcctggcacactgaagc
acttgaataaatgaaggacatcaggccaccacaaaaaaagctggaatttg
tgttgcgggccttaaggagccatgaaaagcttagaacagaagtttcaagt
tcattgcactgttgtaagttccacgagaacagaatagatcaagcagtaga
cattaaaggaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17440646_17441764
seq2: B6Ng01-316L09.g_69_1182 (reverse)

seq1  AGCCTCCTTT-ATGTCTACTGCTTTGATCTAATTCTG-TCTCGTGGACTT  48
      |||||||||| ||||||||||| ||||||| |||||| |||||||||  |
seq2  AGCCTCCTTTAATGTCTACTGC-TTGATCT-ATTCTGTTCTCGTGGAACT  48

seq1  TCCACACAGTGCCATGAACTTGAACCTCCTTGTTCTAAGCCTTTCCATGG  98
      | || ||||||| ||||||||||| || | ||||||||| |||| |||||
seq2  TACA-ACAGTGCAATGAACTTGAAACTTC-TGTTCTAAG-CTTTTCATGG  95

seq1  CTCCCTAGGGCCCGC-ACACAAATTCCAGCCTTTTTTGT-GTGGCCCCTG  146
      |||| || ||||||| |||||||||||||| |||||||| ||||  ||||
seq2  CTCCTTAAGGCCCGCAACACAAATTCCAGCTTTTTTTGTGGTGG--CCTG  143

seq1  ATGTCCTTCATTTA-TCAAGTGCCTTCAGTGTGCCAGGCGCTGTCCCATG  195
      |||||||||||||| ||||||| ||||||||||||||||||||| |||||
seq2  ATGTCCTTCATTTATTCAAGTG-CTTCAGTGTGCCAGGCGCTGT-CCATG  191

seq1  TGATGGGCACAGCAGCCTTCTTCTGTGCTGCTCCATAGTCTCCTGGCTAG  245
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGATGGGCACAGCAG-CTTCTTCTGTGCTGCTCCATAGTCTCCTGGCTAG  240

seq1  CTAACTGCTCTCATGGTTAGCATGGGTACGGCTGGGAGGCCTTTCCCCAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGCTCTCATGGTTAGCATGGGTACGGCTGGGAGGCCTTTCCCCAC  290

seq1  CTGTCCACGTAGACCAGGTCTGTCCTTATTGACTCTGAGAACAGGGGAGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCACGTAGACCAGGTCTGTCCTTATTGACTCTGAGAACAGGGGAGC  340

seq1  TGCAGGGATGGCCCAATAGGTTTGCCTACACTGACAGTTCCACCCCTTGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGATGGCCCAATAGGTTTGCCTACACTGACAGTTCCACCCCTTGC  390

seq1  CAGGAAATCCCGCTGTCTGAAATCCTTGCGGTGGAACCGGCTCAGAACTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATCCCGCTGTCTGAAATCCTTGCGGTGGAACCGGCTCAGAACTT  440

seq1  CAGCCTCGTACCCCCGGGCACCAACCCACACTGCTTCGAGATCATCACGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCGTACCCCCGGGCACCAACCCACACTGCTTCGAGATCATCACGG  490

seq1  CCAATGTCACCTACTTTGTGGGCGAAACCCCTGGCGGGGCCCCGGGAGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTCACCTACTTTGTGGGCGAAACCCCTGGCGGGGCCCCGGGAGGG  540

seq1  CCAAGTGGACAGGGAACAGAGGCCGTTCGGGGTTGGGAGACAGCCATCCG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGACAGGGAACAGAGGCCGTTCGGGGTTGGGAGACAGCCATCCG  590

seq1  CCAGGCACTGATGCCCGTTATCCTCCAAGATGCGCCCAGTGCCCCGGGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACTGATGCCCGTTATCCTCCAAGATGCGCCCAGTGCCCCGGGGC  640

seq1  ACACACCGCACAGTAAGTCCCTACCTGGGTTGCTAGAGGTGGTACTAAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCGCACAGTAAGTCCCTACCTGGGTTGCTAGAGGTGGTACTAAAG  690

seq1  AGGCTGAAAGACATCCTGGATAAGGAACAAGCCTGGAGGAAGGCAGGCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAAGACATCCTGGATAAGGAACAAGCCTGGAGGAAGGCAGGCTG  740

seq1  CCTTCTTTCTACGGCACTGAGGATAGCGGGTAAAATGCCAGGCATAGAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTCTACGGCACTGAGGATAGCGGGTAAAATGCCAGGCATAGAAT  790

seq1  CGTGAGGTCCCATATGGAGCCTCTGGTACAACTGGTCAGCTCCGTAGTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGGTCCCATATGGAGCCTCTGGTACAACTGGTCAGCTCCGTAGTGG  840

seq1  TTCTTGTATTCCATTTCCCAGACGACGAAACTAAGGTTCCAAGTGTAGCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTATTCCATTTCCCAGACGACGAAACTAAGGTTCCAAGTGTAGCC  890

seq1  TTTGGAGGCACAGGTGACACCTGTGCTGAGCCCAGAGCTCGCTCACTTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGCACAGGTGACACCTGTGCTGAGCCCAGAGCTCGCTCACTTCT  940

seq1  CTCTTCCCCTCTTCCTAGGACAAGCGTCTCTGAGTATCTCCGTGTCCAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCCTCTTCCTAGGACAAGCGTCTCTGAGTATCTCCGTGTCCAAC  990

seq1  AGTCAGATCCAAGAGAATGTGGTAAGTCAGTCGGCGCAGGACCCCCTTCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATCCAAGAGAATGTGGTAAGTCAGTCGGCGCAGGACCCCCTTCC  1040

seq1  TCCTGACTTGGTGGGCTGCACAGATGGCTCGGCAGTTAAGAGCACTTGCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTTGGTGGGCTGCACAGATGGCTCGGCAGTTAAGAGCACTTGCC  1090

seq1  CTGAAGAAGATCTGAGTTGAATTC  1119
      ||||||||||||||||||||||||
seq2  CTGAAGAAGATCTGAGTTGAATTC  1114