BAC Information

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BAC

Clone NameB6Ng01-316L24
Chromosome7 (Build37)
Map Location 104,657,862 - 104,784,442
singlet/doubletdoublet
Overlap geneInts4, 1810020D17Rik, Rsf1, LOC622994
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14
Downstream geneLOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316L24.bB6Ng01-316L24.g
ACCGA107068GA107069
length1,0711,127
definitionB6Ng01-316L24.b B6Ng01-316L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,657,862 - 104,658,935)(104,783,319 - 104,784,442)
sequence
gaattcactaaacttaggcagctgcgtcatcacacccatgtggataagat
gagggacaaaaggcccatattaagcatcagtgtaatgggaacaggaagga
gatgctccagggagaatctgtagactgcgagaagagcagggaatgaaaac
agcccaagtgagatgaaatccatgttttttatggctctagtgtagtgttc
agtttaatttgggcttttgttttgtttttcatgttgcagaggttcgcatt
gctgctgtggaggctctgtgcatgctagcccagtcttcgccctcttttgc
tgaaaagtgccttgactttctagttgacatgttcaatgatgaaattgagg
aagtgcgtctgcagtccatacacaccatgagaaaaatctctaacaatatc
accctccgagaagatcagcttgacactgtcctggctgtgttagaggtgag
tgtttctagctggtcattcatttcttcatcaggtacctatgaggctgtct
cccctaaaatcatcagacagcacagttctgccatcttaccctcttctccc
caaagtggagctggatattagtgagcaatatgaatcagcttgctatggct
gtgaccaaggaagggaataaaaagaatgtctagcttgggccagctgagtc
agggagacagaagtatgcggtgttcatagcggtggtagcatacagctgaa
gaccggagggagggtgggaagtacctgtggtaaagtagcagacacatggt
gaagaagcctttcccatcttcctttttattccatttagcaggaaagggtc
ttagtcttcagttcttcccaccatgaggttttacagagaaataattgtct
gaggtcacatagtcaatacagagtctcacttcctaggctgtagaactcat
gttcttgggttatttttctgatgtgtctggatcacttgcagggctgatgt
tggagtctcactgttataaatgggatctggcatcagtccccacaacaccc
atcaaagggaagaacaattctgatgcctcactaatagcataattatttca
gattctggctgcaattttttt
gaattcagaaacccaatctacattgcatactacttagatccatcagaaat
atttactaatgcctgtaacaacttaagaaagaatctctggaggtggagaa
atggctcagtggttaggaacacttgctactcttgaagagtaccccagttc
agttcccagcactcacacgatggcttgcaaacatccacgactccagtcca
gaaagatctgatgccctcttctgaccttggagggcaccaggtacatgtgt
gatacatatacatatatacaggcaaaacacatataaaataaacatacata
taaaaactaaagtaaataaatctaaaaaacattaacaatgttttaaaaaa
ttaaaaaatactttctcttgctttttatctgttcaacaactttgtgtatt
ttgtggatatattttttccatatgagattaattatttgataatctttcaa
aaggaaggcaaggggaacagcttgttcatttttatcactagacagaaatt
caaaaccatgtcaaattctacagatatattcaatagaagctctcttcaaa
tcagtgtcttctttattattagtacagtataaattccactgataggcatt
ttacaacttctgtaacagcctttaacttgaatgttttagaattcttttcc
tacataagccaaatcagagccactgtaacagactgaagagaaaacatgtg
gaaatgttccactcaaaagttagtgcgaatctagcgtggggtcatactgc
acagaggtggagtgagaaggacaacaaggttcagacatgcctggagtgaa
cagtgacaccttgtctcacataacacaaagagtggagtaagctctcttcc
caggaaaacctctttcttagagtctttcatgagaagctaggaaagatcca
tgtgctaaattccagagggatccgacttctcagaccatgtgattgtgttt
gttttcagcaataaaagggtgatgatgaaggatgaagacgattcttggag
ctgtaagtgcataaaacattatgccatgcatctgccaatgtcatgggaat
tttttattgttattgtaaccaaacagccaaatgaggggctaaagccagta
gaggcaaataagagaggatttgttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104657862_104658935
seq2: B6Ng01-316L24.b_49_1119

seq1  GAATTCACTAAACTTAGGCAGCTGCGTCATCACACCCATGTGGATAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAACTTAGGCAGCTGCGTCATCACACCCATGTGGATAAGAT  50

seq1  GAGGGACAAAAGGCCCATATTAAGCATCAGTGTAATGGGAACAGGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAAAAGGCCCATATTAAGCATCAGTGTAATGGGAACAGGAAGGA  100

seq1  GATGCTCCAGGGAGAATCTGTAGACTGCGAGAAGAGCAGGGAATGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCCAGGGAGAATCTGTAGACTGCGAGAAGAGCAGGGAATGAAAAC  150

seq1  AGCCCAAGTGAGATGAAATCCATGTTTTTTATGGCTCTAGTGTAGTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGTGAGATGAAATCCATGTTTTTTATGGCTCTAGTGTAGTGTTC  200

seq1  AGTTTAATTTGGGCTTTTGTTTTGTTTTTCATGTTGCAGAGGTTCGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATTTGGGCTTTTGTTTTGTTTTTCATGTTGCAGAGGTTCGCATT  250

seq1  GCTGCTGTGGAGGCTCTGTGCATGCTAGCCCAGTCTTCGCCCTCTTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTGGAGGCTCTGTGCATGCTAGCCCAGTCTTCGCCCTCTTTTGC  300

seq1  TGAAAAGTGCCTTGACTTTCTAGTTGACATGTTCAATGATGAAATTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTGCCTTGACTTTCTAGTTGACATGTTCAATGATGAAATTGAGG  350

seq1  AAGTGCGTCTGCAGTCCATACACACCATGAGAAAAATCTCTAACAATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCGTCTGCAGTCCATACACACCATGAGAAAAATCTCTAACAATATC  400

seq1  ACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGTTAGAGGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGTTAGAGGTGAG  450

seq1  TGTTTCTAGCTGGTCATTCATTTCTTCATCAGGTACCTATGAGGCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAGCTGGTCATTCATTTCTTCATCAGGTACCTATGAGGCTGTCT  500

seq1  CCCCTAAAATCATCAGACAGCACAGTTCTGCCATCTTACCCTCTTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAAAATCATCAGACAGCACAGTTCTGCCATCTTACCCTCTTCTCCC  550

seq1  CAAAGTGGAGCTGGATATTAGTGAGCAATATGAATCAGCTTGCTATGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGAGCTGGATATTAGTGAGCAATATGAATCAGCTTGCTATGGCT  600

seq1  GTGACCAAGGAAGGGAATAAAAAGAATGTCTAGCTTGGGCCAGCTGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAAGGAAGGGAATAAAAAGAATGTCTAGCTTGGGCCAGCTGAGTC  650

seq1  AGGGAGACAGAAGTATGCGGTGTTCATAGCGGTGGTAGCATACAGCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACAGAAGTATGCGGTGTTCATAGCGGTGGTAGCATACAGCTGAA  700

seq1  GACCGGAGGGAGGGTGGGAAGTACCTGTGGTAAAGTAGCAGACACATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGAGGGAGGGTGGGAAGTACCTGTGGTAAAGTAGCAGACACATGGT  750

seq1  GAAGAAGCCTTTCCCATCTTCCTTTTTATTCCATTTAGCAGGAAAGGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCCTTTCCCATCTTCCTTTTTATTCCATTTAGCAGGAAAGGGTC  800

seq1  TTAGTCTTCAGTTCTTCCCACCATGAGGTTTTACAGAGAAATAATTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTCAGTTCTTCCCACCATGAGGTTTTACAGAGAAATAATTGTCT  850

seq1  GAGGTCACATAGTCAATACAGAGTCTCACTTCCTAGGCTGTAGAACTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACATAGTCAATACAGAGTCTCACTTCCTAGGCTGTAGAACTCAT  900

seq1  GTTCTTGGGTTATTTTTCTGATGTGTCTGGATCCACTTGCAGGGGCTGAT  950
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  GTTCTTGGGTTATTTTTCTGATGTGTCTGGAT-CACTTGCA-GGGCTGAT  948

seq1  GTTGGAGTCTCACTGTTAATAAATGGGATCTGGCATCAGTCCCCACCAAC  1000
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  GTTGGAGTCTCACTGTT-ATAAATGGGATCTGGCATCAGTCCCCA-CAAC  996

seq1  ACCCATCAAA-GGAAGAACAAATCTGATGCCTCACTATTAGCATAATTAT  1049
      |||||||||| |||||||||| ||||||||||||||| ||||||||||||
seq2  ACCCATCAAAGGGAAGAACAATTCTGATGCCTCACTAATAGCATAATTAT  1046

seq1  TTCAGATTCTGGCTGCATTTTTTTT  1074
      ||||||||||||||||| |||||||
seq2  TTCAGATTCTGGCTGCAATTTTTTT  1071

seq1: chr7_104783319_104784442
seq2: B6Ng01-316L24.g_69_1195 (reverse)

seq1  CAGAACAATTCCTCTTCTTATTTTGCTTCTACT-GCTTTA-ACCCTCATT  48
      |||||||| ||||| ||||| ||||| |||||| ||||||  ||||||||
seq2  CAGAACAAATCCTC-TCTTA-TTTGCCTCTACTGGCTTTAGCCCCTCATT  48

seq1  TTGCTGTTT-GTTACAATAACAATAAAAA--TTCCATGACATTGGCAGAT  95
      | ||||||| |||||||||||||||||||  | |||||||||||||||||
seq2  TGGCTGTTTGGTTACAATAACAATAAAAAATTCCCATGACATTGGCAGAT  98

seq1  GCATTGCATAATGTTTTATGCACTTACCAGCCTCCAAG-ATCGTCTTCAT  144
      |||| ||||||||||||||||||||| ||| ||||||| |||||||||||
seq2  GCATGGCATAATGTTTTATGCACTTA-CAG-CTCCAAGAATCGTCTTCAT  146

seq1  -CTTCATCATCACCCTTTTATTGCTGAAAACAAACACAATCACATGGTCT  193
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCATCACCCTTTTATTGCTGAAAACAAACACAATCACATGGTCT  196

seq1  GAGAAGTCGGATCCCTCTGGAATTTAGCACATGGATCTTTCCTAGCTTCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCGGATCCCTCTGGAATTTAGCACATGGATCTTTCCTAGCTTCT  246

seq1  CATGAAAGACTCTAAGAAAGAGGTTTTCCTGGGAAGAGAGCTTACTCCAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGACTCTAAGAAAGAGGTTTTCCTGGGAAGAGAGCTTACTCCAC  296

seq1  TCTTTGTGTTATGTGAGACAAGGTGTCACTGTTCACTCCAGGCATGTCTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGTTATGTGAGACAAGGTGTCACTGTTCACTCCAGGCATGTCTG  346

seq1  AACCTTGTTGTCCTTCTCACTCCACCTCTGTGCAGTATGACCCCACGCTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTTGTCCTTCTCACTCCACCTCTGTGCAGTATGACCCCACGCTA  396

seq1  GATTCGCACTAACTTTTGAGTGGAACATTTCCACATGTTTTCTCTTCAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGCACTAACTTTTGAGTGGAACATTTCCACATGTTTTCTCTTCAGT  446

seq1  CTGTTACAGTGGCTCTGATTTGGCTTATGTAGGAAAAGAATTCTAAAACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACAGTGGCTCTGATTTGGCTTATGTAGGAAAAGAATTCTAAAACA  496

seq1  TTCAAGTTAAAGGCTGTTACAGAAGTTGTAAAATGCCTATCAGTGGAATT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTAAAGGCTGTTACAGAAGTTGTAAAATGCCTATCAGTGGAATT  546

seq1  TATACTGTACTAATAATAAAGAAGACACTGATTTGAAGAGAGCTTCTATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTACTAATAATAAAGAAGACACTGATTTGAAGAGAGCTTCTATT  596

seq1  GAATATATCTGTAGAATTTGACATGGTTTTGAATTTCTGTCTAGTGATAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATCTGTAGAATTTGACATGGTTTTGAATTTCTGTCTAGTGATAA  646

seq1  AAATGAACAAGCTGTTCCCCTTGCCTTCCTTTTGAAAGATTATCAAATAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACAAGCTGTTCCCCTTGCCTTCCTTTTGAAAGATTATCAAATAA  696

seq1  TTAATCTCATATGGAAAAAATATATCCACAAAATACACAAAGTTGTTGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCATATGGAAAAAATATATCCACAAAATACACAAAGTTGTTGAA  746

seq1  CAGATAAAAAGCAAGAGAAAGTATTTTTTAATTTTTTAAAACATTGTTAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAAAGCAAGAGAAAGTATTTTTTAATTTTTTAAAACATTGTTAA  796

seq1  TGTTTTTTAGATTTATTTACTTTAGTTTTTATATGTATGTTTATTTTATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTAGATTTATTTACTTTAGTTTTTATATGTATGTTTATTTTATA  846

seq1  TGTGTTTTGCCTGTATATATGTATATGTATCACACATGTACCTGGTGCCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTGCCTGTATATATGTATATGTATCACACATGTACCTGGTGCCC  896

seq1  TCCAAGGTCAGAAGAGGGCATCAGATCTTTCTGGACTGGAGTCGTGGATG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGTCAGAAGAGGGCATCAGATCTTTCTGGACTGGAGTCGTGGATG  946

seq1  TTTGCAAGCCATCGTGTGAGTGCTGGGAACTGAACTGGGGTACTCTTCAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGCCATCGTGTGAGTGCTGGGAACTGAACTGGGGTACTCTTCAA  996

seq1  GAGTAGCAAGTGTTCCTAACCACTGAGCCATTTCTCCACCTCCAGAGATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCAAGTGTTCCTAACCACTGAGCCATTTCTCCACCTCCAGAGATT  1046

seq1  CTTTCTTAAGTTGTTACAGGCATTAGTAAATATTTCTGATGGATCTAAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAAGTTGTTACAGGCATTAGTAAATATTTCTGATGGATCTAAGT  1096

seq1  AGTATGCAATGTAGATTGGGTTTCTGAATTC  1124
      |||||||||||||||||||||||||||||||
seq2  AGTATGCAATGTAGATTGGGTTTCTGAATTC  1127