BAC Information

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BAC

Clone NameB6Ng01-317E01
Chromosome7 (Build37)
Map Location 7,832,309 - 7,833,420
singlet/doubletsinglet
Overlap geneVmn2r36
Upstream geneUsp29, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40
Downstream geneLOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317E01.bB6Ng01-317E01.g
ACCGA107446GA107447
length1,2261,116
definitionB6Ng01-317E01.b B6Ng01-317E01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttttgagatttgtttacctcactgaagacgatatcctccagag
tcatccatttgtctgagaattttatgaattcattgtttttaatagctgag
tagtagtccattgtgtaaatgtaacacattttctgtatccattcctctgt
tgaggggcatccaggttatttccattttctggctattatatataaggctg
ctatgaacatagtggagcatgtgtccttatttcgagttggaacgtcttct
gggtaaatgtccaggagaggtattaatggatcctcagatagtactatgtc
caccaattttctgaggaagtaccagaatgatttccagaatggttgtagca
gctcacaatcccaccagcaatggaggagtgttcctcttttaccacatact
ccccagcatctgcagtcacctgaatttttgatcttagccattctgactgg
tgtgaggtggaatctcagggttattttgatttgcatttccctggtgatta
aggatgttgaacatttcttttggtgtttctcagccattcggtattcctca
attgagaattctgtgtttaactctgtctgtaccccatttttaatggggtt
atttggttttctggactctattttcttaaattctttatatatattggata
ttagtcccctatctgatttaggattggtaaagatcttttcccaatctgtt
tgttgacatttgccatttgttgtcttactgacattatactttgcctaaca
gaagctttgcaattttatgtggtctcatatgtcaattcttgatcttacag
tacaagccatttctgtagttcaggaagttttcccttgtgccaatatcttc
gagactcttctctactatctcctctataagataattgtctctgattttat
gtggagttccttgatccacttagaatagagctttgtacaaaaagataaga
atggataaattcacattcttctacatgacagtgccagttataccagttct
ttgtcaaaatgctgtattatttccactggaggattgtagcctccttgtca
aagaattaaggtaaccatagaatgttgtgatccaattttctttgcctcaa
ttcattccacgaatctacatgtcttgtcgctgttacagtaccatgcagct
ttatatacaattgtcctgtatgtcagcttgagtcaagtcatgtgatttca
caaggcttggtttatggtgtgacaat
gaattcattccctatgacacattgagactctgacttctactgggaaaaga
tgtataatagctactggagaatttactagctcaaacttgttgacacagaa
acaacacagaattgaacaggtaggctgtatgtatatatacatacttatat
gtgtgagttcatgtgaaggtagatattgcattattgtatttaagtgattc
ctgtcataagtcataggaagaaggtggaatatgagaggaaatataatgtt
tatatttgaatagtagaaaatattaatgaaataagccctaagatgtttcc
tcatctggcaatcattaatcaaaagttctggttattgttcatgatgtgca
ctaattttagcactgaaggaaaaatatctctgtagatactttgtactaaa
aaatccttcaccttgattccttcttcatatggaaagctgagcactttaat
ccttgcctcacctccatttgtatgagaatcaaggatgaaatcagtgctga
gaaacagaatgagcaaaatcacagaggaatcctctggaaagggtggtaac
ccagatggtttgtgttaagcaattatactccattctaaaattgtaatccc
caactgggtaacaacatgaacagtgattgtaattgcacttaatttacaag
tcatttcagagaatgttgatgtgctttcttggttttcagaattcttatct
tcaacaatgcatttgtggacagatattatttgataagttgcctaagagcc
taagaagttggattagctataaatagaatatgttgctctaccagagaacc
tgagtttcagatcacagtacccatgacagatatctcacaagtaaatataa
atttaatgacagtagtattatttgctcatatgtgcatgtgtatatgtgtt
atccactccacacacttaagcaaattaatgcaacaaatattttatggaat
ttttgttatttaatttttgttgtacgaattaatttttttacgtctaatac
atttttgtacactttaatttgttttcaagtacagtatatgtttaaaatgt
atgacttcaaggacatcttaagtagattggcttgttttactccatgcctt
cattgggaataactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7832309_7833420
seq2: B6Ng01-317E01.g_66_1181

seq1  GAATTCATTCCCTATGACACATTGAGACTCTGACTTCTACTGGGAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCTATGACACATTGAGACTCTGACTTCTACTGGGAAAAGA  50

seq1  TGTATAATAGCTACTGGAGAATTTACTAGCTCAAACTTGTTGACACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATAGCTACTGGAGAATTTACTAGCTCAAACTTGTTGACACAGAA  100

seq1  ACAACACAGAATTGAACAGGTAGGCTGTATGTATATATACATACTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACAGAATTGAACAGGTAGGCTGTATGTATATATACATACTTATAT  150

seq1  GTGTGAGTTCATGTGAAGGTAGATATTGCATTATTGTATTTAAGTGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTTCATGTGAAGGTAGATATTGCATTATTGTATTTAAGTGATTC  200

seq1  CTGTCATAAGTCATAGGAAGAAGGTGGAATATGAGAGGAAATATAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATAAGTCATAGGAAGAAGGTGGAATATGAGAGGAAATATAATGTT  250

seq1  TATATTTGAATAGTAGAAAATATTAATGAAATAAGCCCTAAGATGTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGAATAGTAGAAAATATTAATGAAATAAGCCCTAAGATGTTTCC  300

seq1  TCATCTGGCAATCATTAATCAAAAGTTCTGGTTATTGTTCATGATGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGCAATCATTAATCAAAAGTTCTGGTTATTGTTCATGATGTGCA  350

seq1  CTAATTTTAGCACTGAAGGAAAAATATCTCTGTAGATACTTTGTACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTAGCACTGAAGGAAAAATATCTCTGTAGATACTTTGTACTAAA  400

seq1  AAATCCTTCACCTTGATTCCTTCTTCATATGGAAAGCTGAGCACTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTCACCTTGATTCCTTCTTCATATGGAAAGCTGAGCACTTTAAT  450

seq1  CCTTGCCTCACCTCCATTTGTATGAGAATCAAGGATGAAATCAGTGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTCACCTCCATTTGTATGAGAATCAAGGATGAAATCAGTGCTGA  500

seq1  GAAACAGAATGAGCAAAATCACAGAGGAATCCTCTGGAAAGGGTGGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAATGAGCAAAATCACAGAGGAATCCTCTGGAAAGGGTGGTAAC  550

seq1  CCAGATGGTTTGTGTTAAGCAATTATACTCCATTCTAAAATTGTAATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGTTTGTGTTAAGCAATTATACTCCATTCTAAAATTGTAATCCC  600

seq1  CAACTGGGTAACAACATGAACAGTGATTGTAATTGCACTTAATTTACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGGTAACAACATGAACAGTGATTGTAATTGCACTTAATTTACAAG  650

seq1  TCATTTCAGAGAATGTTGATGTGCTTTCTTGGTTTTCAGAATTCTTATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAGAGAATGTTGATGTGCTTTCTTGGTTTTCAGAATTCTTATCT  700

seq1  TCAACAATGCATTTGTGGACAGATATTATTTGATAAGTTGCCTAAGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATGCATTTGTGGACAGATATTATTTGATAAGTTGCCTAAGAGCC  750

seq1  TAAGAAGTTGGATTAGCTATAAATAGAATATGTTGCTCTACCAGAGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTTGGATTAGCTATAAATAGAATATGTTGCTCTACCAGAGAACC  800

seq1  TGAG-TTCAGATCACAGTACCCATGACAGATATCTCACAAGTAAATATAA  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCAGATCACAGTACCCATGACAGATATCTCACAAGTAAATATAA  850

seq1  ATTTAATGACAGTAGTATTATTTGCTCATATGTGCATGTGTATATGTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGACAGTAGTATTATTTGCTCATATGTGCATGTGTATATGTGTT  900

seq1  ATCCACTCCACACACTTAAGCAAA-TAATGCAACAAAATATTTTATGGAA  948
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  ATCCACTCCACACACTTAAGCAAATTAATGCAAC-AAATATTTTATGGAA  949

seq1  TTTTTG-TATTTAA-TTTTGTTGTACGAATTAATTTTTTTACGTCTAATA  996
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTATTTAATTTTTGTTGTACGAATTAATTTTTTTACGTCTAATA  999

seq1  CAATTTTGTACACTTTAAATTTGTTTTCAAGTACAGTATATG-TTAAAAT  1045
      || ||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  CATTTTTGTACACTTT-AATTTGTTTTCAAGTACAGTATATGTTTAAAAT  1048

seq1  GTATGACTTCAAAAGACAACTT-AGTAGATTGCTTGGTTTTACTCCATG-  1093
      |||||||||| || |||| ||| |||||||||  | ||||||||||||| 
seq2  GTATGACTTC-AAGGACATCTTAAGTAGATTGGCTTGTTTTACTCCATGC  1097

seq1  CATCA-TGGGAATAAACTCA  1112
      | ||| ||||||| ||||||
seq2  CTTCATTGGGAAT-AACTCA  1116