BAC Information

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BAC

Clone NameB6Ng01-318P11
Chromosome7 (Build37)
Map Location 63,429,789 - 63,579,081
singlet/doubletdoublet
Overlap geneHerc2, p
Upstream geneLuzp2, LOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959
Downstream geneLOC100040839, Gabrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318P11.bB6Ng01-318P11.g
ACCGA108719GA108720
length1,135909
definitionB6Ng01-318P11.b B6Ng01-318P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,577,951 - 63,579,081)(63,429,789 - 63,430,692)
sequence
gaattctacacaccttatggtgacaggggtaaaaaggagcatcgtagtga
cattgtctaagaaggcagaaaggatggcagccatgagacaaagcatgaag
atcatggcccacactcttcctcgagaaagttgatatgcctaggacacata
caggaaagaacaagccagaatcagaacatctgtacaataaaagctaggtt
tttactaatgactccaagatatggagaccaaaatatattctcattcagaa
tttgcacggttttgttgtagaaattattttttaaaaagaaattttcaatt
ccaaaactgaagtgatcattaacaccaagcttctgtgtttgtggagtgtg
ccaaggtctccttatctactagggtatggcaagatcttcctttatccact
atgcatggaaggttctattcaaatcttcagacccattgatagatggtcca
gggttccagttaaaatgcaaagtccaaccatgatgagttaccatttctta
cctattagaatgctttccatttgaaaagatagaaggtaacagggctggtg
attgtggcagtggtagagggtttggctagcatgcacaagatccagggttc
aacccccagcaccacctacaccagtgtggtggctcaggtctgccatacca
gccgtgaggagatgaaggtcagccctcctccgtaatatagtgagtctgag
gcaagactgtgttaaatgaaaccctgttttaaaagcagaaaggaggtagg
ggtgaaagagactaagcatgggagattaggaaaaaggggatccttcgaga
gcagtgtaaaataagttgtgtttcaaagagttaaaaggataaccaccggc
agcaaatgaataaaggtgaagggatatacacatgtaccatgtcatttaga
gacctcttcccgagatatgggaaccaacctaagtgtttgccagcagatga
ataaagacaacatgttcataaacatgaaatactattttcccaaaaatatc
ctcacagttttagcaagtattttagcattatatattattttaagcattat
ttttaagtgcaattagcaggcataacacatacaaagcatattgattcaat
ttctattggtggaatcaggaaactgattccataga

gaattctttctgagtcatgtgttgttgttcctctccctttcttcttcttt
tctcatgatatgtattctttcttatattctctggggtgaaacttccttct
tcctctgtgtacattagtctcttggcttttttttgcactattggcctaat
tatcattgaattgttatttgtatatgcctttaagcattcttctctgtaca
ttttttttaagtgtgggtgggttttgtaggaaagggagacttttttttta
aagatttatttattatatgtaagtacactagctgtcttcagacacatcag
aagagggcatcagatctcattacagatggttgtgagccaccatgtgggta
ctgggaattgaactcaggacctgtggaagagcagtcaatgctcttacctg
ctgagacatctctccagccctctgtaaatgttaatgaatagatttgctgg
gtattgcaatcttggttgacagctatttactttcagggcttgaaacacat
cattttctatttcctgacttttagagttggtgatgacaggcgtgatttta
ttctgatgtttcttcatgggagggtgaattgctttttctttcttacagct
tttagttttgtttctttaccttttttttaaatgtttgtttatttattttt
tacacaccagattttatccccctgtccaccctcctactgctccatatccc
atacctcctccccaccccccgtctctgcgaggatgtctccacccgctacc
cctatgtgacctctaaactccctggggcctccagttctcttgagggttag
gtgcatcatcctgattgaacacagaccttggcagtcctcatatgtatgtt
gggggcctcatatcagcagtgtatgctgtctggttgggtggtcccagttg
tttgagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_63577951_63579081
seq2: B6Ng01-318P11.b_46_1180 (reverse)

seq1  TCTATGGGATCAGTTTTCTTGAATTCCAC--ATAGAAATGAAATC-ATAT  47
      ||||||| |||||||| ||   |||||||  ||||||||  |||| ||||
seq2  TCTATGGAATCAGTTTCCT--GATTCCACCAATAGAAATTGAATCAATAT  48

seq1  GGCCTTTGTATGTG-TATGCCTGGCTAATTGCACTT-AAAATAATGCTTA  95
      |  ||||||||||| ||||||| ||||||||||||| |||||||||||||
seq2  G--CTTTGTATGTGTTATGCCT-GCTAATTGCACTTAAAAATAATGCTTA  95

seq1  AAATAATTATATTATGCT-AAATACTTGCTAAAACTGTGAGGATA-TTTT  143
      |||||| ||||| ||||| |||||||||||||||||||||||||| ||||
seq2  AAATAA-TATATAATGCTAAAATACTTGCTAAAACTGTGAGGATATTTTT  144

seq1  GGGAAAATAGTATTTCATGTTTATGAACATGTTGTCTTTATTCATCTGCT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATAGTATTTCATGTTTATGAACATGTTGTCTTTATTCATCTGCT  194

seq1  GGCAAACACTTAGGTTGGTT-CCATATCTC-GGAAGAGGTCTCTAAATGA  241
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  GGCAAACACTTAGGTTGGTTCCCATATCTCGGGAAGAGGTCTCTAAATGA  244

seq1  CATGGTACATGTGTATATCCCTTCACC-TTATTCATTTGCTGCCGGTGGT  290
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATGGTACATGTGTATATCCCTTCACCTTTATTCATTTGCTGCCGGTGGT  294

seq1  TATCCTTTTAACTCTTTGAAACACAACTTATTTTACACTGCTCTCGAAGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTTAACTCTTTGAAACACAACTTATTTTACACTGCTCTCGAAGG  344

seq1  ATCCCCTTTTTCCTAATCTCCCATGCTTAGTCTCTTTCACCCCTACCTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTTTTCCTAATCTCCCATGCTTAGTCTCTTTCACCCCTACCTCC  394

seq1  TTTCTGCTTTTAAAACAGGGTTTCATTTAACACAGTCTTGCCTCAGACTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTTTAAAACAGGGTTTCATTTAACACAGTCTTGCCTCAGACTC  444

seq1  ACTATATTACGGAGGAGGGCTGACCTTCATCTCCTCACGGCTGGTATGGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTACGGAGGAGGGCTGACCTTCATCTCCTCACGGCTGGTATGGC  494

seq1  AGACCTGAGCCACCACACTGGTGTAGGTGGTGCTGGGGGTTGAACCCTGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGAGCCACCACACTGGTGTAGGTGGTGCTGGGGGTTGAACCCTGG  544

seq1  ATCTTGTGCATGCTAGCCAAACCCTCTACCACTGCCACAATCACCAGCCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTGCATGCTAGCCAAACCCTCTACCACTGCCACAATCACCAGCCC  594

seq1  TGTTACCTTCTATCTTTTCAAATGGAAAGCATTCTAATAGGTAAGAAATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCTTCTATCTTTTCAAATGGAAAGCATTCTAATAGGTAAGAAATG  644

seq1  GTAACTCATCATGGTTGGACTTTGCATTTTAACTGGAACCCTGGACCATC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCATCATGGTTGGACTTTGCATTTTAACTGGAACCCTGGACCATC  694

seq1  TATCAATGGGTCTGAAGATTTGAATAGAACCTTCCATGCATAGTGGATAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGGGTCTGAAGATTTGAATAGAACCTTCCATGCATAGTGGATAA  744

seq1  AGGAAGATCTTGCCATACCCTAGTAGATAAGGAGACCTTGGCACACTCCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATCTTGCCATACCCTAGTAGATAAGGAGACCTTGGCACACTCCA  794

seq1  CAAACACAGAAGCTTGGTGTTAATGATCACTTCAGTTTTGGAATTGAAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGAAGCTTGGTGTTAATGATCACTTCAGTTTTGGAATTGAAAA  844

seq1  TTTCTTTTTAAAAAATAATTTCTACAACAAAACCGTGCAAATTCTGAATG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTAAAAAATAATTTCTACAACAAAACCGTGCAAATTCTGAATG  894

seq1  AGAATATATTTTGGTCTCCATATCTTGGAGTCATTAGTAAAAACCTAGCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATATTTTGGTCTCCATATCTTGGAGTCATTAGTAAAAACCTAGCT  944

seq1  TTTATTGTACAGATGTTCTGATTCTGGCTTGTTCTTTCCTGTATGTGTCC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTACAGATGTTCTGATTCTGGCTTGTTCTTTCCTGTATGTGTCC  994

seq1  TAGGCATATCAACTTTCTCGAGGAAGAGTGTGGGCCATGATCTTCATGCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATATCAACTTTCTCGAGGAAGAGTGTGGGCCATGATCTTCATGCT  1044

seq1  TTGTCTCATGGCTGCCATCCTTTCTGCCTTCTTAGACAATGTCACTACGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCATGGCTGCCATCCTTTCTGCCTTCTTAGACAATGTCACTACGA  1094

seq1  TGCTCCTTTTTACCCCTGTCACCATAAGGTGTGTAGAATTC  1131
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTTTTACCCCTGTCACCATAAGGTGTGTAGAATTC  1135


seq1: chr7_63429789_63430692
seq2: B6Ng01-318P11.g_68_976

seq1  GAATTCTTTCTGAGTCATGTGTTGTTGTTCCTCTCCCTTTCTTCTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGAGTCATGTGTTGTTGTTCCTCTCCCTTTCTTCTTCTTT  50

seq1  TCTCATGATATGTATTCTTTCTTATATTCTCTGGGGTGAAACTTCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGATATGTATTCTTTCTTATATTCTCTGGGGTGAAACTTCCTTCT  100

seq1  TCCTCTGTGTACATTAGTCTCTTGGCTTTTTTTTGCACTATTGGCCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTGTACATTAGTCTCTTGGCTTTTTTTTGCACTATTGGCCTAAT  150

seq1  TATCATTGAATTGTTATTTGTATATGCCTTTAAGCATTCTTCTCTGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGAATTGTTATTTGTATATGCCTTTAAGCATTCTTCTCTGTACA  200

seq1  TTTTTTTTAAGTGTGGGTGGGTTTTGTAGGAAAGGGAGACTTTTTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAGTGTGGGTGGGTTTTGTAGGAAAGGGAGACTTTTTTTTTA  250

seq1  AAGATTTATTTATTATATGTAAGTACACTAGCTGTCTTCAGACACATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTATTATATGTAAGTACACTAGCTGTCTTCAGACACATCAG  300

seq1  AAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGGTA  350

seq1  CTGGGAATTGAACTCAGGACCTGTGGAAGAGCAGTCAATGCTCTTACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATTGAACTCAGGACCTGTGGAAGAGCAGTCAATGCTCTTACCTG  400

seq1  CTGAGACATCTCTCCAGCCCTCTGTAAATGTTAATGAATAGATTTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACATCTCTCCAGCCCTCTGTAAATGTTAATGAATAGATTTGCTGG  450

seq1  GTATTGCAATCTTGGTTGACAGCTATTTACTTTCAGGGCTTGAAACACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCAATCTTGGTTGACAGCTATTTACTTTCAGGGCTTGAAACACAT  500

seq1  CATTTTCTATTTCCTGACTTTTAGAGTTGGTGATGACAGGCGTGATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTATTTCCTGACTTTTAGAGTTGGTGATGACAGGCGTGATTTTA  550

seq1  TTCTGATGTTTCTTCATGGGAGGGTGAATTGCTTTTTCTTTCTTACAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGTTTCTTCATGGGAGGGTGAATTGCTTTTTCTTTCTTACAGCT  600

seq1  TTTAGTTTTGTTTCTTTACCTTTTTTTTAAATGTTTGTTTATTTATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTTGTTTCTTTACCTTTTTTTTAAATGTTTGTTTATTTATTTTT  650

seq1  TACACACCAGATTTTATCCCCCTGTCCACCCTCCTACTGCTCCATATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACCAGATTTTATCCCCCTGTCCACCCTCCTACTGCTCCATATCCC  700

seq1  ATACCTCCTCCCCACCCCCCGTCTCTGCGAGGATGTCTCCACCCGCTA-C  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATACCTCCTCCCCACCCCCCGTCTCTGCGAGGATGTCTCCACCCGCTACC  750

seq1  CCTATGTGACCTCTAAACTCCCTGGGGCCTCCAG-TCTCTTGAGGGTTAG  798
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTATGTGACCTCTAAACTCCCTGGGGCCTCCAGTTCTCTTGAGGGTTAG  800

seq1  GTGCATCATCCTGATTGAACACAGACC-TGGCAGTCCTCATATGTATGTT  847
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGCATCATCCTGATTGAACACAGACCTTGGCAGTCCTCATATGTATGTT  850

seq1  GGGGGCCTCATATCAGCAGGTGTATGCTGTCTGGTT-GGTGGT-CCAG-T  894
      |||||||||||||||||| ||||||||||||||||| |||||| |||| |
seq2  GGGGGCCTCATATCAGCA-GTGTATGCTGTCTGGTTGGGTGGTCCCAGTT  899

seq1  GTTTGAGAGT  904
      ||||||||||
seq2  GTTTGAGAGT  909


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