BAC Information

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BAC

Clone NameB6Ng01-319F17
Chromosome7 (Build37)
Map Location 87,387,410 - 87,628,714
singlet/doubletdoublet
Overlap geneLOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm
Upstream geneAbhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374
Downstream geneCrtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319F17.bB6Ng01-319F17.g
ACCGA109007GA109008
length1,124909
definitionB6Ng01-319F17.b B6Ng01-319F17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,387,410 - 87,388,539)(87,627,813 - 87,628,714)
sequence
gaattctcattcactcctagaactcacgatggagctcaagttgaccttca
acttctgaatttcatgccacctccatatgctagggtcacaggagtctaac
acaggagtctgtacctgtcttatggggtgatggaggtcagacccagggct
ttgtttgcctttggtcatcatcaccctgtccaattcatccacaacccaac
cccatatcttttttaaaaaatgtatcttatttattaacttattgtgtgtg
tgtctagatcacaagataaattttgtgaagccatttctctcctaccttag
tgatcccaaggagtctctaactcaggtcaaaggcttggctgcctttacct
gctgagctgtctgaaagcccctcccttattttttatgcaaatgtatttat
atgaattgtgatgttactaccagaaaccacgatcttgagaacgacatcaa
gtcctaaatatatgcttttcctttttaataaccatatcttgttatagtat
acattttaaatgatattgtacactaagcatatgtatcttacagaattcca
tctaaattatgagctcacgattccagaaaatgtcatacacaacagcctct
taaattgaaaggaagaggggctggtgagatggctcagtgggtaagagcac
ccgactgctcttccaaaggtccaaagttcaaatcccagcaaccacatggt
ggctcacaaccatccgcaacaagatctgactccctcttctggagtgtctg
aagacagctacagtgtactcatatattaataaaataaatctttaaaaaaa
acaaaaaaaattgaaaggaagagcttgatacaggtttcagaatacataaa
catatattaaactggcctattgaaaggcacaatattttatttgtttaatg
ctcagatgtcagggtaatgtatcctttagggtacatttttcctgcacatg
taatgtatgcttgcttacttacttgcaacccctttaggagtacaagaagc
agattcattagctatataaaaacattcctgatgtacaaatagaaatcaca
tagatcctccaccctcccacctccaagctcaagaatggtggagacatagc
agtcaaggctaaaggatgaagagt
gaattctctgttcccagcaacactctttactgttaacaaaaataggtaaa
acgactaaacacaggtagtcctgccaagggtttctggttctgtgattgaa
gaaaattcacttatacccatgctataatttactttgttttgtttgctatc
ctggaacagtctgtggtgataacattcagaagggtggaaggtaagatttc
attgtttatattagaaaggacaaggaggcatatgaagaggaaaatgcgaa
aggcctgacctgcacatatgccatgagtgcccccccattaataaagaaat
aattttaagctataggaaagaaagcgtaacagcagatatttggtagggta
gtggcagaaacagaagagagtggtgaggagtaaaatgggatgtgtgacta
gttggtgtgagagcagagctggatgttctgagaagcctaccacagaggga
aagagggaaaggagagaatatggcgccaggagaagccactaaagtgccta
tggattgtagttctgtaagatcctgacacagaaggaaggaattcacagaa
gagtctataaggaaggcagaaggccatatagagaatgaactaaggaaaca
tgaaggattaatgggtgccaagagcagtcacccagaggagaaggacgctt
gtgtcagagtcaccacattccctttgcagcccagagcaaaagtacaggac
ccatgatctctccttttattttatttctgccatgtgtgtactgccccctt
atctttttaaatatttaagttacatttatttattgtataattttctttaa
ttgtttaaatcttttagccatgtttgtttttgttttgttgttttttgaga
cagagtctaactattattgccattttcttctggtgtgtgtgtgtgtgtgt
gtgtgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_87387410_87388539
seq2: B6Ng01-319F17.b_50_1173

seq1  GAATTCTCATTCACTCCTAGAACTCACGATGGAGCTCAAGTTGACCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTCACTCCTAGAACTCACGATGGAGCTCAAGTTGACCTTCA  50

seq1  ACTTCTGAATTTCATGCCACCTCCATATGCTAGGGTCACAGGAGTCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAATTTCATGCCACCTCCATATGCTAGGGTCACAGGAGTCTAAC  100

seq1  ACAGGAGTCTGTACCTGTCTTATGGGGTGATGGAGGTCAGACCCAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTCTGTACCTGTCTTATGGGGTGATGGAGGTCAGACCCAGGGCT  150

seq1  TTGTTTGCCTTTGGTCATCATCACCCTGTCCAATTCATCCACAACCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCCTTTGGTCATCATCACCCTGTCCAATTCATCCACAACCCAAC  200

seq1  CCCATATCTTTTTTAAAAAATGTATCTTATTTATTAACTTATTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCTTTTTTAAAAAATGTATCTTATTTATTAACTTATTGTGTGTG  250

seq1  TGTCTAGATCACAAGATAAATTTTGTGAAGCCATTTCTCTCCTACCTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGATCACAAGATAAATTTTGTGAAGCCATTTCTCTCCTACCTTAG  300

seq1  TGATCCCAAGGAGTCTCTAACTCAGGTCAAAGGCTTGGCTGCCTTTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCAAGGAGTCTCTAACTCAGGTCAAAGGCTTGGCTGCCTTTACCT  350

seq1  GCTGAGCTGTCTGAAAGCCCCTCCCTTATTTTTTATGCAAATGTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTGTCTGAAAGCCCCTCCCTTATTTTTTATGCAAATGTATTTAT  400

seq1  ATGAATTGTGATGTTACTACCAGAAACCACGATCTTGAGAACGACATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGTGATGTTACTACCAGAAACCACGATCTTGAGAACGACATCAA  450

seq1  GTCCTAAATATATGCTTTTCCTTTTTAATAACCATATCTTGTTATAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAATATATGCTTTTCCTTTTTAATAACCATATCTTGTTATAGTAT  500

seq1  ACATTTTAAATGATATTGTACACTAAGCATATGTATCTTACAGAATTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAATGATATTGTACACTAAGCATATGTATCTTACAGAATTCCA  550

seq1  TCTAAATTATGAGCTCACGATTCCAGAAAATGTCATACACAACAGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTATGAGCTCACGATTCCAGAAAATGTCATACACAACAGCCTCT  600

seq1  TAAATTGAAAGGAAGAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAAAGGAAGAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCAC  650

seq1  CCGACTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGT  700

seq1  GGCTCACAACCATCCGCAACAAGATCTGACTCCCTCTTCTGGAGTGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAACCATCCGCAACAAGATCTGACTCCCTCTTCTGGAGTGTCTG  750

seq1  AAGACAGCTACAGTGTACTCATATATTAATAAAATAAATCTTTAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTACAGTGTACTCATATATTAATAAAATAAATCTTTAAAAAAA  800

seq1  ACAAAAAAAATTGAAAGGAAGAGCTTGATACAGGTTTCAGAATACATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAATTGAAAGGAAGAGCTTGATACAGGTTTCAGAATACATAAA  850

seq1  CATATATTAAACTGGCCTATTG-AAGGCACAATATTTTATTTGTTTAATG  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATATATTAAACTGGCCTATTGAAAGGCACAATATTTTATTTGTTTAATG  900

seq1  CTCAGATGTCAGGGGTAATGTATCC-TTAGGGTACATTTTTCCTGCACAT  948
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  CTCAGATGTCA-GGGTAATGTATCCTTTAGGGTACATTTTTCCTGCACAT  949

seq1  GTAATGTATGCTTGCTTACTTACTTGCAACCCCTTTAAGGAGTAACAAGA  998
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  GTAATGTATGCTTGCTTACTTACTTGCAACCCCTTT-AGGAGT-ACAAGA  997

seq1  AGGCAGATTCATTAGCTATAATAAAAACATTCTTGAATGTACAAATAGAA  1048
      | ||||||||||||||||| |||||||||||| || |||||||||||| |
seq2  A-GCAGATTCATTAGCTAT-ATAAAAACATTCCTG-ATGTACAAATAG-A  1043

seq1  AATCACATAGAATCCTCCACC--CCCA-CTCCAAGGCTCAGGAAATGTGG  1095
      |||||||||| ||||||||||  |||| |||||| ||||| |||  ||||
seq2  AATCACATAG-ATCCTCCACCCTCCCACCTCCAA-GCTCAAGAATGGTGG  1091

seq1  AGACATAAAGCAGTCAGGCCTAGAGGATGAAGAGT  1130
      ||||||  |||||||| | ||| ||||||||||||
seq2  AGACAT--AGCAGTCAAGGCTAAAGGATGAAGAGT  1124

seq1: chr7_87627813_87628714
seq2: B6Ng01-319F17.g_69_977 (reverse)

seq1  CAAACACACACACACACACACACACA-CAGAAG-AAATGGCAAT-ATAGT  47
      |||||||||||||||||||||||||| |||||| |||||||||| |||||
seq2  CAAACACACACACACACACACACACACCAGAAGAAAATGGCAATAATAGT  50

seq1  TAGACTCTGTCTC-AAAAACA--CAAACAAAAACAAACATGGCTAAAAGA  94
      ||||||||||||| |||||||   ||||||||||||||||||||||||||
seq2  TAGACTCTGTCTCAAAAAACAACAAAACAAAAACAAACATGGCTAAAAGA  100

seq1  TTTAAACAATTAAAGAAAATTATACAATAAATAAATGTAACTTAAATATT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAATTAAAGAAAATTATACAATAAATAAATGTAACTTAAATATT  150

seq1  TAAAAAGATAAGGGGGCAGTACACACATGGCAGAAAT-AAATAAAAGGAG  193
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAAAAAGATAAGGGGGCAGTACACACATGGCAGAAATAAAATAAAAGGAG  200

seq1  AGATCATGGGTCCTGTACTTTTGCTCTGGGCTGCAAAGGGAATGTGGTGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGGGTCCTGTACTTTTGCTCTGGGCTGCAAAGGGAATGTGGTGA  250

seq1  CTCTGACACAAGCGTCCTTCTCCTCTGGGTGACTGCTCTTGGCACCCATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACACAAGCGTCCTTCTCCTCTGGGTGACTGCTCTTGGCACCCATT  300

seq1  AATCCTTCATGTTTCCTTAGTTCATTCTCTATATGGCCTTCTGCCTTCCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCATGTTTCCTTAGTTCATTCTCTATATGGCCTTCTGCCTTCCT  350

seq1  TATAGACTCTTCTGTGAATTCCTTCCTTCTGTGTCAGGATCTTACAGAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACTCTTCTGTGAATTCCTTCCTTCTGTGTCAGGATCTTACAGAAC  400

seq1  TACAATCCATAGGCACTTTAGTGGCTTCTCCTGGCGCCATATTCTCTCCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCCATAGGCACTTTAGTGGCTTCTCCTGGCGCCATATTCTCTCCT  450

seq1  TTCCCTCTTTCCCTCTGTGGTAGGCTTCTCAGAACATCCAGCTCTGCTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTTCCCTCTGTGGTAGGCTTCTCAGAACATCCAGCTCTGCTCT  500

seq1  CACACCAACTAGTCACACATCCCATTTTACTCCTCACCACTCTCTTCTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAACTAGTCACACATCCCATTTTACTCCTCACCACTCTCTTCTGT  550

seq1  TTCTGCCACTACCCTACCAAATATCTGCTGTTACGCTTTCTTTCCTATAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCACTACCCTACCAAATATCTGCTGTTACGCTTTCTTTCCTATAG  600

seq1  CTTAAAATTATTTCTTTATTAATGGGGGGGCACTCATGGCATATGTGCAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTATTTCTTTATTAATGGGGGGGCACTCATGGCATATGTGCAG  650

seq1  GTCAGGCCTTTCGCATTTTCCTCTTCATATGCCTCCTTGTCCTTTCTAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCCTTTCGCATTTTCCTCTTCATATGCCTCCTTGTCCTTTCTAAT  700

seq1  ATAAACAATGAAATCTTACCTTCCACCCTTCTGAATGTTATCACCACAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAATGAAATCTTACCTTCCACCCTTCTGAATGTTATCACCACAGA  750

seq1  CTGTTCCAGGATAGCAAACAAAACAAAGTAAATTATAGCATGGGTATAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCAGGATAGCAAACAAAACAAAGTAAATTATAGCATGGGTATAAG  800

seq1  TGAATTTTCTTCAATCACAGAACCAGAAACCCTTGGCAGGACTACCTGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTCTTCAATCACAGAACCAGAAACCCTTGGCAGGACTACCTGTG  850

seq1  TTTAGTCGTTTTACCTATTTTTGTTAACAGTAAAGAGTGTTGCTGGGAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCGTTTTACCTATTTTTGTTAACAGTAAAGAGTGTTGCTGGGAAC  900

seq1  AGAGAATTC  902
      |||||||||
seq2  AGAGAATTC  909