BAC Information

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BAC

Clone NameB6Ng01-319K14
Chromosome7 (Build37)
Map Location 72,033,159 - 72,172,695
singlet/doubletdoublet
Overlap genenone
Upstream geneKlf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
Downstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319K14.bB6Ng01-319K14.g
ACCGA109235GA109236
length588997
definitionB6Ng01-319K14.b B6Ng01-319K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,033,159 - 72,033,751)(72,171,890 - 72,172,695)
sequence
cctgggaataagagcagaagaacacagatgaagctaagaggagggccttg
caacacaggggggtggagaaggggatgtgggaggtagagacagacattga
tctccactgctagagctgaatctctccacaagctggggctatggataggg
tctgaatccattttatacagtgataagagcaggagagagaatctggtact
ttagggacagggaccacagctcttgcccttggtcataggcctgaaatgca
aggagggtttgggccctggttcctgttctagtttcctatgatcattctcc
tgttacacagctgcctagaaactatccatgaggctgtgaccaaaactcct
atccagccactgtgatggaaaaaacgcacagacacctcaagctttgccaa
ctagaccagccagctcccctgccacaagccctattagaaagcactgaaac
cggaaacgtgatggcacccatctttgggactggctcctgcaatataggag
atctgttaagctcccgcctatgaattcagagtcaacttgtttctaaatgc
ctgcctcgttgtgccctgtgaacttcagtcctttgagt
gaattctatggtcccccatcatctgccttccccttctctactgtattcaa
tagagaggcagtctgagtcccaatcctgtcagaacgtgggagctgccagc
acagtgtccagttctcccttcttagctcaaagagaggtgggacagcgtgg
accagcttagccatttggaatgaggaaatgcccagtgatctcagagtgag
caggctggatggctcattgagaaagaagaatggtggattcccgagggata
aatagaacaatgcctgctctccatgccattctaccccaaacactctttag
aggaagtagttagaattagcatgggagatgggatctttaccactacactt
ggaccacgctaacatttttagtatctcttaattctgtgatcaactgggcc
atagcttggaatgcatgatgtgtggatttggaaaactttccccactctgt
aaaaaagtttcattgtgtaatgctaaccctataagtgtcccatagatttg
ggaaagcatctgagatgtatgaaatactttaataaaacaaggagtggaaa
gcagtgcccacagggcacagggcaggcacagttgggagttcttggaggta
ttatgactgggtaaggtgcagatgcccagaaggtgatgggagaatatccc
atagcagtctgtgcccataagtataaaaacactaactcgggaattagtgg
gagaaggtaagaggagcaggcacaatcactgattggaaatcccattagtc
ggacttgtcagcctccctccaagctgttatctgggagaaccctgactccc
cctccccacccccaaacagtacaattgttgtcacttctcttgattgaatg
ccagaagaagatgggacaacctgtttgctaagtcaccccacactttttgt
agcaggacgcggagtcaagcttgtgttctaacttttcagggttgcttggg
agaggatttgttcattcaaagtcctgctcatttattgacccattact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_72033159_72033751
seq2: B6Ng01-319K14.b_47_640

seq1  GAATTCCCTGGGAATAAGAGCAGAAGAACACAGATGAAGCTAAGAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGGAATAAGAGCAGAAGAACACAGATGAAGCTAAGAGGAGG  50

seq1  GCCTTGCAACACAGGGGGGTGGAGAAGGGGATGTGGGAGGTAGAGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCAACACAGGGGGGTGGAGAAGGGGATGTGGGAGGTAGAGACAGA  100

seq1  CATTGATCTCCACTGCTAGAGCTGAATCTCTCCACAAGCTGGGGCTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCTCCACTGCTAGAGCTGAATCTCTCCACAAGCTGGGGCTATGG  150

seq1  ATAGGGTCTGAATCCATTTTATACAGTGATAAGAGCAGGAGAGAGAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTCTGAATCCATTTTATACAGTGATAAGAGCAGGAGAGAGAATCT  200

seq1  GGTACTTTAGGGACAGGGACCACAGCTCTTGCCCTTGGTCAGAGGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGTACTTTAGGGACAGGGACCACAGCTCTTGCCCTTGGTCATAGGCCTGA  250

seq1  AATGCAAGGAGGGTTTGGGCCCTGGTTCCTGTTCTAGTTTCCTATGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGGAGGGTTTGGGCCCTGGTTCCTGTTCTAGTTTCCTATGATCA  300

seq1  TTCTCCTGTTACACAGCTGCCTAGAAACTATCCATGAGGCTGTGACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTTACACAGCTGCCTAGAAACTATCCATGAGGCTGTGACCAAA  350

seq1  ACTCCAATCCAGCCACTGTGATGGAAAAAACGCACAGACACCTCAAGCTT  400
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATCCAGCCACTGTGATGGAAAAAACGCACAGACACCTCAAGCTT  400

seq1  TGCCAACTAGACCAGCCAGCTCCCCTGCCACAAGCCCTATTAGAAAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACTAGACCAGCCAGCTCCCCTGCCACAAGCCCTATTAGAAAGCAC  450

seq1  TGAAACCGGAAACGTGATGGCACCCATCTTTGGGACTGGCTCCTGCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCGGAAACGTGATGGCACCCATCTTTGGGACTGGCTCCTGCAATA  500

seq1  TAGGAGATCTGTTAGGCTCCCGCCTATGAATTCAGAGTCAACTTGTTTCT  550
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAGGAGATCTGTTAAGCTCCCGCCTATGAATTCAGAGTCAACTTGTTTCT  550

seq1  AAATGCCTGCCTCGTTGTGCCCTGTGAACTTCAG-CCTTTGAGT  593
      |||||||||||||||||||||||||||||||||| |||||||||
seq2  AAATGCCTGCCTCGTTGTGCCCTGTGAACTTCAGTCCTTTGAGT  594

seq1: chr7_72171890_72172695
seq2: B6Ng01-319K14.g_249_1065 (reverse)

seq1  AGTATTGGGTCTATAATTGAGCAGGACTT--GATGA--CAATCCTCTCCC  46
      |||| |||||| |||| ||||||||||||   ||||   |||||||||||
seq2  AGTAATGGGTCAATAAATGAGCAGGACTTTGAATGAACAAATCCTCTCCC  50

seq1  AGGC-ACCCTG-AAAGTTAG-ACAC-AGCTTGACTCCGCGTCTTGCTAC-  91
      | || |||||| |||||||| |||| |||||||||||||||| |||||| 
seq2  AAGCAACCCTGAAAAGTTAGAACACAAGCTTGACTCCGCGTCCTGCTACA  100

seq1  AAAAGTGTGGGGTGACTTAGC-AACAGGTTGTCCCATCTTCTTCTGGCAT  140
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAGTGTGGGGTGACTTAGCAAACAGGTTGTCCCATCTTCTTCTGGCAT  150

seq1  TCAATCAAGAGAAGTGACAACAATTGTACTGTTTGGGGGTGGGGAGGGGG  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAAGAGAAGTGACAACAATTGTACTGTTTGGGGGTGGGGAGGGGG  200

seq1  AGTCAGGGTTCTCCCAGATGACAGCTTGGAGGGAGGCTGACAAGTCCGAC  240
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTCAGGGTTCTCCCAGATAACAGCTTGGAGGGAGGCTGACAAGTCCGAC  250

seq1  TAATGGGATTTCCAATCAGTGATTGTGCCTGCTCCTCTTACCTTCTCCCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGATTTCCAATCAGTGATTGTGCCTGCTCCTCTTACCTTCTCCCA  300

seq1  CTAATTCCCGAGTTAGTGTTTTTATACTTATGGGCACAGACTGCTATGGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCCCGAGTTAGTGTTTTTATACTTATGGGCACAGACTGCTATGGG  350

seq1  ATATTCT-CCATCACCTTCTGGGCATCTGCACCTTACCCAGTCATAATAC  389
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCCCATCACCTTCTGGGCATCTGCACCTTACCCAGTCATAATAC  400

seq1  CTCCAAGAACTCCCAACTGTGCCTGCCCTGTGCCCTGTGGGCACTGCTTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGAACTCCCAACTGTGCCTGCCCTGTGCCCTGTGGGCACTGCTTT  450

seq1  CCACTCCTTGTTTTATTAAAGTATTTCATACATCTCAGATGCTTTCCCAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTTGTTTTATTAAAGTATTTCATACATCTCAGATGCTTTCCCAA  500

seq1  ATCTATGGGACACTTATAGGGTTAGCATTACACAATGAAACTTTTTTACA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGGGACACTTATAGGGTTAGCATTACACAATGAAACTTTTTTACA  550

seq1  GAGTGGGGAAAGTTTTCCAAATCCACACATCATGCATTCCAAGCTATGGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGAAAGTTTTCCAAATCCACACATCATGCATTCCAAGCTATGGC  600

seq1  CCAGTTGATCACAGAATTAAGAGATACTAAAAATGTTAGCGTGGTCCAAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGATCACAGAATTAAGAGATACTAAAAATGTTAGCGTGGTCCAAG  650

seq1  TGTAGTGGTAAAGATCCCATCTCCCATGCTAATTCTAACTACTTCCTCTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGTAAAGATCCCATCTCCCATGCTAATTCTAACTACTTCCTCTA  700

seq1  AAGAGTGTTTGGGGTAGAATGGCATGGAGAGCAGGCATTGTTCTATTTAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTTTGGGGTAGAATGGCATGGAGAGCAGGCATTGTTCTATTTAT  750

seq1  CCCTCGGGAATCCACCATTCTTCTTTCTCAATGAGCCATCCAGCCTGCTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGGAATCCACCATTCTTCTTTCTCAATGAGCCATCCAGCCTGCTC  800

seq1  ACTCTGAGATCACTGGG  806
      |||||||||||||||||
seq2  ACTCTGAGATCACTGGG  817