BAC Information

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BAC

Clone NameB6Ng01-320A16
Chromosome7 (Build37)
Map Location 52,143,403 - 52,307,184
singlet/doubletdoublet
Overlap geneMed25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12
Upstream geneKlk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1
Downstream genePrrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320A16.bB6Ng01-320A16.g
ACCGA109516GA109517
length1,0981,071
definitionB6Ng01-320A16.b B6Ng01-320A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,143,403 - 52,144,496)(52,306,143 - 52,307,184)
sequence
gaattcactctgtagaccaggctggtctcaaactcagaaatcctcctgcc
tctgcctcccgagtgctgggattaaaggcgtgtgccaccacgccctgctt
acaatcaattaaaaacaaacaaacaaacaaaaaaacccgggtggtggcac
agcctgtactggagaggaaagaggtctggagccagcctggttggttcttc
agcctgcagctcactgcaaagtggttgcttagcccgcccccccaccccca
ccccccaacgcagatagcaaatgagtggtaacacactgagcctcccaaca
ctaggcctgggctgggttcccagcaagataaaaacagagctgccgagcct
gatgacccgaatccaaaccctagaacccccagtgctgaatcagagccaac
tcctgcagggcgggaagtagagtttacacacacatacacacacacacaaa
agaggtcccaggttgactcagctacctttgcccatgatcacaccctgccc
cagaggccctggtcacagtgaatgtgaccagcagctccccagggccagga
cagtgtctgcacctcatgaccactcagcatttgtgccgcacaccttcatg
agtgagtaaacagtcagccgaaggctgtgacacagacaccctgttctttc
tgactcaaagccattagctatgggagaccggctcctggcagaagggagat
gtaacatcagaagcctacctcttagcagcacggccacttcttaactttcc
agcacgccctgccctgtctcccagcaccatcagcagcaggtgagatttcc
taagcagggaccagcctggccactgtcactcccattcctatcctgcccag
aaaatcttggacatgagtcacgggcctctgagcaacaacagcaatcctgg
gagagttaaatgatgttggaaatgccaagccagcagcagaggcctccaaa
tggggggcactcgtgtttacaggattctagtgcagaagtgatgccacagt
gtcctgtccagccttttccctaaggagaaggccactccttccacagtcga
cacaactgaagtctgcctgaagcctgttcccccatagccatcactcat
tgtcagcgacttgtacctgggactttccctgtgtcctgtcccctccccac
cttctccccttgccatttgggacacaagctacctcctgctcctggcctgg
ctggattcctttcctaattcagggtccgtgtcgtttcagcgggtcttggg
ttgtccgtgcgtccttgcagtgttggacctttcgttctgttgtggcatgg
gaggacttcaagggaggaccacacctttcacgttgactatttgcttcccc
tgactttctccgtccccagtgtgtcctcgcatgcccgtgtttgcaaacgt
gggactcttaagtgctccagaatgacattttttaaccccctcccccgcca
tgggatgactggattccctagtgttatctctgggttctttggagtaacac
ctccattcagttgagaagcccctcctagcccccttcccagaggatagctt
gagagaatactctgacatctctctcttgctcccagcttggtctacggcag
ctcccggacttcccacccagaaaccgacatcttgcatcgccaggcctatg
cggccccccacccactacaaagctatgccaccaaccaccaccctgcaggt
atgggctcccatcctggagggctggggcaagtctgcccttttaagatatc
tgattggttgctgaaaagttccgcccctgctaaattggccttgctctggg
tcctggacctctttttgccacttctccctctgattggttgcctctgaggc
cttatctcacgcccggatttgtcagcccgtcatgagctccgcccctctgc
ctccttattggctgttactcattcagggcccccccccccccaaattccaa
cctttctctttcaaggctttttcttttccctacagccccacccctagttc
ttttttctttccccgatgggatcactttgggcgggccgcctccttcttct
tacatattgactcagtttatctagcccctccccttttggcttagagtaac
cctcatcccccaactttgttctttgctgcccacaccttcttgaattttta
aatcgggtgcagttctgccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52143403_52144496
seq2: B6Ng01-320A16.b_50_1147

seq1  GAATTCACTCTGTAGACCAGGCTGGTCTCAAACTCAGAAATCCTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGTCTCAAACTCAGAAATCCTCCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCTGCTT  100

seq1  ACAATCAATTAAAAACAAACAAACAAACAAAAAAACCCGGGTGGTGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAATTAAAAACAAACAAACAAACAAAAAAACCCGGGTGGTGGCAC  150

seq1  AGCCTGTACTGGAGAGGAAAGAGGTCTGGAGCCAGCCTGGTTGGTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTACTGGAGAGGAAAGAGGTCTGGAGCCAGCCTGGTTGGTTCTTC  200

seq1  AGCCTGCAGCTCACTGCAAAGTGGTTGCTTAGCCCGCCCCCCCACCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCAGCTCACTGCAAAGTGGTTGCTTAGCCCGCCCCCCCACCCCCA  250

seq1  CCCCCCAACGCAGATAGCAAATGAGTGGTAACACACTGAGCCTCCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAACGCAGATAGCAAATGAGTGGTAACACACTGAGCCTCCCAACA  300

seq1  CTAGGCCTGGGCTGGGTTCCCAGCAAGATAAAAACAGAGCTGCCGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCTGGGCTGGGTTCCCAGCAAGATAAAAACAGAGCTGCCGAGCCT  350

seq1  GATGACCCGAATCCAAACCCTAGAACCCCCAGTGCTGAATCAGAGCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCCGAATCCAAACCCTAGAACCCCCAGTGCTGAATCAGAGCCAAC  400

seq1  TCCTGCAGGGCGGGAAGTAGAGTTTACACACACATACACACACACACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGGGCGGGAAGTAGAGTTTACACACACATACACACACACACAAA  450

seq1  AGAGGTCCCAGGTTGACTCAGCTACCTTTGCCCATGATCACACCCTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCCAGGTTGACTCAGCTACCTTTGCCCATGATCACACCCTGCCC  500

seq1  CAGAGGCCCTGGTCACAGTGAATGTGACCAGCAGCTCCCCAGGGCCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCCTGGTCACAGTGAATGTGACCAGCAGCTCCCCAGGGCCAGGA  550

seq1  CAGTGTCTGCACCTCATGACCACTCAGCATTTGTGCCGCACACCTTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTGCACCTCATGACCACTCAGCATTTGTGCCGCACACCTTCATG  600

seq1  AGTGAGTAAACAGTCAGCCGAAGGCTGTGACACAGACACCCTGTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTAAACAGTCAGCCGAAGGCTGTGACACAGACACCCTGTTCTTTC  650

seq1  TGACTCAAAGCCATTAGCTATGGGAGACCGGCTCCTGGCAGAAGGGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAAAGCCATTAGCTATGGGAGACCGGCTCCTGGCAGAAGGGAGAT  700

seq1  GTAACATCAGAAGCCTACCTCTTAGCAGCACGGCCACTTCTTAACTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATCAGAAGCCTACCTCTTAGCAGCACGGCCACTTCTTAACTTTCC  750

seq1  AGCACGCCCTGCCCTGTCTCCCAGCACCATCAGCAGCAGGTGAGATTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGCCCTGCCCTGTCTCCCAGCACCATCAGCAGCAGGTGAGATTTCC  800

seq1  TAAGCAGGGACCAGCCTGGCCACTGTCACTCCCATTCCTATCCTGCCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGGACCAGCCTGGCCACTGTCACTCCCATTCCTATCCTGCCCAG  850

seq1  AAAATCTTGGACATGAGTCACGGGCC-CTGAGCAAC-ACAGCAATCCTGG  898
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  AAAATCTTGGACATGAGTCACGGGCCTCTGAGCAACAACAGCAATCCTGG  900

seq1  GAGAGTTAAATGATGTT-GAAATGCCAAG-CAGCAGCAGAGGCCTCCAAA  946
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  GAGAGTTAAATGATGTTGGAAATGCCAAGCCAGCAGCAGAGGCCTCCAAA  950

seq1  T-GGGGGCACTCGTGTTTACAGGATTCTAAGTGCAGAAGTGGATGCCACA  995
      | |||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  TGGGGGGCACTCGTGTTTACAGGATTCT-AGTGCAGAAGT-GATGCCACA  998

seq1  GTGTCCTGTCCAGCCTTTCCCCTAAGGGAGAGGCCACTCTTCCCACAGTC  1045
      |||||||||||||||||| ||||||||   ||||||||| | ||||||||
seq2  GTGTCCTGTCCAGCCTTTTCCCTAAGGAGAAGGCCACTCCTTCCACAGTC  1048

seq1  GACACCACTGAAGTCTGGCTGAAG-CTGTTCCCCCATAGCCATCACTCAT  1094
      ||||| ||||||||||| |||||| |||||||||||||||||||||||||
seq2  GACACAACTGAAGTCTGCCTGAAGCCTGTTCCCCCATAGCCATCACTCAT  1098

seq1: chr7_52306143_52307184
seq2: B6Ng01-320A16.g_76_1146 (reverse)

seq1  TGGGCAG-ACTGCA-CCGATTT-AAAATTCA--GAGGTGTGGGCAGCAAG  45
      ||||||| |||||| ||||||| ||||||||   ||||||||||||||| 
seq2  TGGGCAGAACTGCACCCGATTTAAAAATTCAAGAAGGTGTGGGCAGCAAA  50

seq1  GA--CAAGGTGGGGGATGA-GGTTACTCTAAG-CAAAAGGGGGAGGGCTA  91
      ||   ||| |||||||||| |||||||||||| |||||||||  ||||||
seq2  GAACAAAGTTGGGGGATGAGGGTTACTCTAAGCCAAAAGGGGAGGGGCTA  100

seq1  AATAACTGGAGTCAATAGGAAAGAAAAAGGAGACGACCAGCCAAGAG-AA  140
       ||||   ||||||||| | ||||| |||||| || || ||| | ||  |
seq2  GATAAACTGAGTCAATATGTAAGAAGAAGGAGGCGGCCCGCCCAAAGTGA  150

seq1  TCCCA-CGGGGAAAGAAAA---GACTAGGGGT-GGGCTGGAGGG-AAAGG  184
      ||||| |||||||||||||    ||||||||| |||||| |||| |||| 
seq2  TCCCATCGGGGAAAGAAAAAAGAACTAGGGGTGGGGCTGTAGGGAAAAGA  200

seq1  AAAAGCC-TGGAAGAGAA--GGTGGGATTT--GGGGGGGGGGGCCCTG-A  228
      ||||||| || |||||||  | ||| ||||  |||||||||||||||| |
seq2  AAAAGCCTTGAAAGAGAAAGGTTGGAATTTGGGGGGGGGGGGGCCCTGAA  250

seq1  TGGGTAACAGCCAAT-AGGAGGCAGAGGGGCGGAGC-CATGACGGGCCTG  276
      || |||||||||||| |||||||||||||||||||| ||||||||| |||
seq2  TGAGTAACAGCCAATAAGGAGGCAGAGGGGCGGAGCTCATGACGGG-CTG  299

seq1  ACAAATCC-GGCGTGAGATAAGGCCTCAGAGGCAACCAATCAGA-GGAGA  324
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  ACAAATCCGGGCGTGAGATAAGGCCTCAGAGGCAACCAATCAGAGGGAGA  349

seq1  AGTGGCAAAAAGAGGTCCAGGACCCAGAGCAAGGCCAA-TTAGCAGGGGC  373
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTGGCAAAAAGAGGTCCAGGACCCAGAGCAAGGCCAATTTAGCAGGGGC  399

seq1  GGAAC-TTTCAGCAACCAATCAGATATCTT-AAAGGGCAGACTTGCCCCA  421
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAACTTTTCAGCAACCAATCAGATATCTTAAAAGGGCAGACTTGCCCCA  449

seq1  GCCCTCCAGGATGGGAGCCCATACCTGCAGGGTGGTGGTTGGTGGCATAG  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCAGGATGGGAGCCCATACCTGCAGGGTGGTGGTTGGTGGCATAG  499

seq1  CTTTGTAGTGGGTGGGGGGCCGCATAGGCCTGGCGATGCAAGATGTCGGT  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGTGGGTGGGGGGCCGCATAGGCCTGGCGATGCAAGATGTCGGT  549

seq1  TTCTGGGTGGGAAGTCCGGGAGCTGCCGTAGACCAAGCTGGGAGCAAGAG  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTGGGAAGTCCGGGAGCTGCCGTAGACCAAGCTGGGAGCAAGAG  599

seq1  AGAGATGTCAGAGTATTCTCTCAAGCTATCCTCTGGGAAGGGGGCTAGGA  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTCAGAGTATTCTCTCAAGCTATCCTCTGGGAAGGGGGCTAGGA  649

seq1  GGGGCTTCTCAACTGAATGGAGGTGTTACTCCAAAGAACCCAGAGATAAC  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCTCAACTGAATGGAGGTGTTACTCCAAAGAACCCAGAGATAAC  699

seq1  ACTAGGGAATCCAGTCATCCCATGGCGGGGGAGGGGGTTAAAAAATGTCA  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGAATCCAGTCATCCCATGGCGGGGGAGGGGGTTAAAAAATGTCA  749

seq1  TTCTGGAGCACTTAAGAGTCCCACGTTTGCAAACACGGGCATGCGAGGAC  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGCACTTAAGAGTCCCACGTTTGCAAACACGGGCATGCGAGGAC  799

seq1  ACACTGGGGACGGAGAAAGTCAGGGGAAGCAAATAGTCAACGTGAAAGGT  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGGACGGAGAAAGTCAGGGGAAGCAAATAGTCAACGTGAAAGGT  849

seq1  GTGGTCCTCCCTTGAAGTCCTCCCATGCCACAACAGAACGAAAGGTCCAA  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCTCCCTTGAAGTCCTCCCATGCCACAACAGAACGAAAGGTCCAA  899

seq1  CACTGCAAGGACGCACGGACAACCCAAGACCCGCTGAAACGACACGGACC  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAAGGACGCACGGACAACCCAAGACCCGCTGAAACGACACGGACC  949

seq1  CTGAATTAGGAAAGGAATCCAGCCAGGCCAGGAGCAGGAGGTAGCTTGTG  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTAGGAAAGGAATCCAGCCAGGCCAGGAGCAGGAGGTAGCTTGTG  999

seq1  TCCCAAATGGCAAGGGGAGAAGGTGGGGAGGGGACAGGACACAGGGAAAG  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATGGCAAGGGGAGAAGGTGGGGAGGGGACAGGACACAGGGAAAG  1049

seq1  TCCCAGGTACAAGTC-CTGACA  1042
      ||||||||||||||| ||||||
seq2  TCCCAGGTACAAGTCGCTGACA  1071