BAC Information

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BAC

Clone NameB6Ng01-320E21
Chromosome7 (Build37)
Map Location 11,381,975 - 11,383,126
singlet/doubletsinglet
Overlap geneBQ559217
Upstream geneVmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13
Downstream geneLOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320E21.bB6Ng01-320E21.g
ACCGA109707GA109708
length1,2001,146
definitionB6Ng01-320E21.b B6Ng01-320E21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattatgaccccatgggacaaggaatagttgaatgtgctcatcgc
actttaaaaagttggcttttaaaaacaaaacagggggcacaagtcccttc
cgctcgactcgtgactcgagccccgggctaccttgccagcagagtcttgc
ccaacacccgcaagggtccacacgggactccccacgggaccctaagacct
ctggtgagtggatcacagtgcctgccccaatccaatcgcgcggaacttga
gactgcggtacatagggaagcaggctacccgggcctgatctggggcacaa
gtcccttccgctcgactcgagactcgagccccgggctaccttgccagcag
agtcttgcccaacacccgcaagggtccacacgggactccccacgggaccc
taagacctctggtgagtggatcacagtgcctgccccaatccaatcgcgtg
gaacttgagactgcggtacatagggaagcaggctacccgggcctgatctg
gggcacaagtcccttccgctcgactcgagactcgagcccccgggctacct
tgccagcagagtcttgcccaacacccgcaagggcccacacgggactcccc
acgggaccctaagacctctggtgagtggaacacagcgcctaccccaatcc
aatcgcgtggaacttgagactgcggtacatagggaagcaggctacccggg
cttgatctggggcacaaaccccttccactccactcgagccccggctacct
tgccagctgagtcgcctgacacccgcaagggcccacacaggattccacac
gtgatcctaagacctctagtgagtggaacacaacttctgccaggagtctg
gttcgaacaccagatatctgggtacctgccttgcaagaagagagcttgcc
tgcagagaatactctgcccactgaaactaaggagagtgctaccctccagg
tctgctcatagaggctaacagagtcacctgaagacagctcttaacagtga
caactaaaacagctagcttcagagataccagatggcgaaaggcaaacgtt
agatctactacagaaatcagacactcaacatcatcagaacgcagcactcc
cacccccaccttagtctggcaccccaacacaaacccgaagtctagaccag
actgaaacatttctcatgatgaatgaatagaagacatctcagaaaatgac

gaattccaggacagccagggctacacagagaaatcctgtctcaaaaaaaa
ccaaaaaacaaaacaaaacaaaacaaaaaacaaaaacaatacctaaaaca
aaacccaaaacccatttaacctaacacttgagaagcagagggagggtaat
tcctctacttctaaggccaaggaggactacataaagaaaccatgctgcaa
cagggcagtggtgacacacgcctttaatcccagtacttaggaggcagagg
caggcagatttttgagttctaggacagcctggtctacaaagtgagttcca
ggacagccagggctatacagagaaaccctgtcttgaaaaataaacaaaca
aacaaacaaaccatgttgcaaatcacaaatacaagcaagcaagcaacctg
gaaatgaaccacacaactaaaccaataaaaatctaaacaaaatatctgaa
ataggaagcatttttaattggtatgtaggaatgcatgtatggggtggtag
aatattttcaacttttcacaatttctgtaaataactaagaattttgcaaa
tcacagctttgagaaaacatccaacataattaaatctttattaggtctat
ccaaatttgaatgtttggactgaagcaccattatgcatcacagaaattct
tatgggtatggtgttgttttgtatatagcaccaaccatatttcaatatca
gaactttaccattctgacaccacagttttctagacagagatttaatgata
tgtaatagccaatttgagaatccatctagtcaatttaatcccaaattttt
gccacacagttccatggatcacaggctagcactgtgaatcctgtgtataa
gtgttcatgacaggatctaacatagtcctcatgaatactcaggaagcatc
tccaggaacaagctgggtctcacacaaagttatctcctctacatccttaa
aggtcctccccaggacaattcttcattctctctactaacatgtaaataaa
ctagacttagttgtgcatagcaacctattgatagctctttctgctatatt
catggtatttgagcaatcaattttcttcagtataaatatttttgttacag
aaatataatctccttgtaagtacacatagacaagccatcaagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11381975_11383126
seq2: B6Ng01-320E21.g_65_1210

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAATCCTGTCTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAATCCTGTCTCAAAAAAAA  50

seq1  CCAAAAAACAAAACAAAACAAAACAAAAAACAAAAACAATACCTAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAACAAAACAAAACAAAACAAAAAACAAAAACAATACCTAAAACA  100

seq1  AAACCCAAAACCCATTTAACCTAACACTTGAGAAGCAGAGGGAGGGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAAACCCATTTAACCTAACACTTGAGAAGCAGAGGGAGGGTAAT  150

seq1  TCCTCTACTTCTAAGGCCAAGGAGGACTACATAAAGAAACCATGCTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACTTCTAAGGCCAAGGAGGACTACATAAAGAAACCATGCTGCAA  200

seq1  CAGGGCAGTGGTGACACACGCCTTTAATCCCAGTACTTAGGAGGCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGTGGTGACACACGCCTTTAATCCCAGTACTTAGGAGGCAGAGG  250

seq1  CAGGCAGATTTTTGAGTTCTAGGACAGCCTGGTCTACAAAGTGAGTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATTTTTGAGTTCTAGGACAGCCTGGTCTACAAAGTGAGTTCCA  300

seq1  GGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAATAAACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAATAAACAAACA  350

seq1  AACAAACAAACCATGTTGCAAATCACAAATACAAGCAAGCAAGCAACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACCATGTTGCAAATCACAAATACAAGCAAGCAAGCAACCTG  400

seq1  GAAATGAACCACACAACTAAACCAATAAAAATCTAAACAAAATATCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAACCACACAACTAAACCAATAAAAATCTAAACAAAATATCTGAA  450

seq1  ATAGGAAGCATTTTTAATTGGTATGTAGGAATGCATGTATGGGGTGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGCATTTTTAATTGGTATGTAGGAATGCATGTATGGGGTGGTAG  500

seq1  AATATTTTCAACTTTTCACAATTTCTGTAAATAACTAAGAATTTTGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCAACTTTTCACAATTTCTGTAAATAACTAAGAATTTTGCAAA  550

seq1  TCACAGCTTTGAGAAAACATCCAACATAATTAAATCTTTATTAGGTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTTTGAGAAAACATCCAACATAATTAAATCTTTATTAGGTCTAT  600

seq1  CCAAATTTGAATGTTTGGACTGAAGCACCATTATGCATCACAGAAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTGAATGTTTGGACTGAAGCACCATTATGCATCACAGAAATTCT  650

seq1  TATGGGTATGGTGTTGTTTTGTATATAGCACCAACCATATTTCAATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTATGGTGTTGTTTTGTATATAGCACCAACCATATTTCAATATCA  700

seq1  GAACTTTACCATTCTGACACCACAGTTTTCTAGACAGAGATTTAATGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTACCATTCTGACACCACAGTTTTCTAGACAGAGATTTAATGATA  750

seq1  TGTAATAGCCAATTTGAGAATCCATCTAGTCAATTTAATCCCAAATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGCCAATTTGAGAATCCATCTAGTCAATTTAATCCCAAATTTTT  800

seq1  GCCACACAGTTCCATGGATCACAGGCTAGCACTGTGAATCCTGTGTATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAGTTCCATGGATCACAGGCTAGCACTGTGAATCCTGTGTATAA  850

seq1  GTGTTCATGACAGGATCTAACATAGTCCTCATGAATACTCAGGAAGCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATGACAGGATCTAACATAGTCCTCATGAATACTCAGGAAGCATC  900

seq1  TCCAGGAACAAGCTGGGTCTCACACAAAGTTATCTCCTCTACATCCTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAACAAGCTGGGTCTCACACAAAGTTATCTCCTCTACATCCTTAA  950

seq1  A-GTCCTCCCCAGGACAATTCTTCATTCTCTCTACTAACATGTAAATAAA  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCCCCAGGACAATTCTTCATTCTCTCTACTAACATGTAAATAAA  1000

seq1  CTAGACTTAGTTGTGCATAGCAAACCTAATTGATAGGCTCCTTTCTGCTA  1049
      ||||||||||||||||||||| ||||| ||||||| ||| ||||||||||
seq2  CTAGACTTAGTTGTGCATAGC-AACCT-ATTGATA-GCT-CTTTCTGCTA  1046

seq1  TATTCATGGTAATTTGAGCCAATCATTTTTCTTCAGTATAAATATTTTTG  1099
      |||||||||| ||||||| |||||| ||||||||||||||||||||||||
seq2  TATTCATGGT-ATTTGAG-CAATCAATTTTCTTCAGTATAAATATTTTTG  1094

seq1  TTACAG-AATATAATCTCCTTTGTAAAATACAACATAGACAAGCAATCAA  1148
      |||||| |||||||||||| |||| || ||| |||||||||||| |||||
seq2  TTACAGAAATATAATCTCC-TTGT-AAGTAC-ACATAGACAAGCCATCAA  1141

seq1  -AGAA  1152
       ||||
seq2  GAGAA  1146