BAC Information

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BAC

Clone NameB6Ng01-320I09
Chromosome7 (Build37)2 (Build37)
Map Location 16,742,119 - 16,743,249165,005,620 - 165,005,670
singlet/doubletsingletsinglet
Overlap geneSlc8a2
Upstream geneLOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn
Downstream geneMrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320I09.bB6Ng01-320I09.g
ACCGA109869GA109870
length1,14499
definitionB6Ng01-320I09.b B6Ng01-320I09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,742,119 - 16,743,249)(165,005,620 - 165,005,670)
sequence
gaattctgggaaagtaagtatatttacttttctccaacattgtcagctgc
aaaagattctgggaaaccaaattttcttaagctcaatatttattttttta
gctgtaaatctgagaaggcaaatgagcttccctcagcccaatactcttag
ctgctaggaatttggggaaattacatttacctgggcccaacactctctta
gctgcaagggattctgagaaaataaatatattcatctcagaccaacattt
tcttagctgcaaggcatgctgggaaagcagttcatgtggaactgtctgga
agcctaacacaatggagctgtgtaagcaaggaagtctgaggcatgatgtg
tgccccagctgggtcatgtgcccacaggggacgaggaggaggatgaggat
ggacctcgtgaggagcggctgccgtcctgctttgactacgtgatgcactt
cctgacggtattctggaaagttctattcgcctgcgttccacccacggagt
actgcaatggctgggcctgctttggtgtctgcatcctggtcattggtgtg
ctcactgccctcatcggagacctggcctcacactttgggtgcaccgtggg
cctcaaggactcagtcaacgccgtggtcttcgtagccctgggcacctcca
tccctggtaacacctcgtgaggctgctttgtagaaaaccatgccagggtc
agggaggggccctgtgggtatagtgtgctggctgtccccaccccagagcg
gccagggaaggggtcacaggggactaacgtggcaggaaatggtaaaaagc
agtcacagactctctaggaagaaggggaggcccctcgggggttggaaatg
gtctcagtgttcctgaaaaacctcacaaaacccgttgtgtgtgggggagc
tccatagagacaggccctgcccaggtgatgtcatagtttcgtgtgggtgg
atggcggaaccctctcagaggtgcatgggacatagatcagagagcagctt
caaggcattcttattccactattgtgggtttttagggattcagacttcag
gtcatcatgcccttgtggcagtgcctttaccttgcctgagaaaatcttta
acagttcatgcccagcctttatatatagacacttgggattccaa
aaggctagcatggtggtctacatagtgtgttctaggacagccagtgttgg
aaggaaagaaggaaggaaggtaggaaggaaggaaggaaggaaggaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16742119_16743249
seq2: B6Ng01-320I09.b_50_1193

seq1  GAATTCTGGGAAAGTAAGTATATTTACTTTTCTCCAACATTGTCAGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAAAGTAAGTATATTTACTTTTCTCCAACATTGTCAGCTGC  50

seq1  AAAAGATTCTGGGAAACCAAATTTTCTTAAGCTCAATATTTATTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTCTGGGAAACCAAATTTTCTTAAGCTCAATATTTATTTTTTTA  100

seq1  GCTGTAAATCTGAGAAGGCAAATGAGCTTCCCTCAGCCCAATACTCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAATCTGAGAAGGCAAATGAGCTTCCCTCAGCCCAATACTCTTAG  150

seq1  CTGCTAGGAATTTGGGGAAATTACATTTACCTGGGCCCAACACTCTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGGAATTTGGGGAAATTACATTTACCTGGGCCCAACACTCTCTTA  200

seq1  GCTGCAAGGGATTCTGAGAAAATAAATATATTCATCTCAGACCAACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAGGGATTCTGAGAAAATAAATATATTCATCTCAGACCAACATTT  250

seq1  TCTTAGCTGCAAGGCATGCTGGGAAAGCAGTTCATGTGGAACTGTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTGCAAGGCATGCTGGGAAAGCAGTTCATGTGGAACTGTCTGGA  300

seq1  AGCCTAACACAATGGAGCTGTGTAAGCAAGGAAGTCTGAGGCATGATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACACAATGGAGCTGTGTAAGCAAGGAAGTCTGAGGCATGATGTG  350

seq1  TGCCCCAGCTGGGTCATGTGCCCACAGGGGACGAGGAGGAGGATGAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGCTGGGTCATGTGCCCACAGGGGACGAGGAGGAGGATGAGGAT  400

seq1  GGACCTCGTGAGGAGCGGCTGCCGTCCTGCTTTGACTACGTGATGCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCGTGAGGAGCGGCTGCCGTCCTGCTTTGACTACGTGATGCACTT  450

seq1  CCTGACGGTATTCTGGAAAGTTCTATTCGCCTGCGTTCCACCCACGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACGGTATTCTGGAAAGTTCTATTCGCCTGCGTTCCACCCACGGAGT  500

seq1  ACTGCAATGGCTGGGCCTGCTTTGGTGTCTGCATCCTGGTCATTGGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAATGGCTGGGCCTGCTTTGGTGTCTGCATCCTGGTCATTGGTGTG  550

seq1  CTCACTGCCCTCATCGGAGACCTGGCCTCACACTTTGGGTGCACCGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCCCTCATCGGAGACCTGGCCTCACACTTTGGGTGCACCGTGGG  600

seq1  CCTCAAGGACTCAGTCAACGCCGTGGTCTTCGTAGCCCTGGGCACCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGACTCAGTCAACGCCGTGGTCTTCGTAGCCCTGGGCACCTCCA  650

seq1  TCCCTGGTAACACCTCGTGAGGCTGCTTTGTAGAAAACCATGCCAGGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTAACACCTCGTGAGGCTGCTTTGTAGAAAACCATGCCAGGGTC  700

seq1  AGGGAGGGGCCCTGTGGGTATAGTGTGCTGGCTGTCCCCACCCCAGAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGGCCCTGTGGGTATAGTGTGCTGGCTGTCCCCACCCCAGAGCG  750

seq1  GCCAGGGAAGGGGTCACAGGGGACTAACGTGGCAGGAAATGGTAAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGAAGGGGTCACAGGGGACTAACGTGGCAGGAAATGGTAAAAAGC  800

seq1  AGTCACAGACTCTCTAGGAAGAAGGGGAGGCCCCTCGGGGGTTGGAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGACTCTCTAGGAAGAAGGGGAGGCCCCTCGGGGGTTGGAAATG  850

seq1  GTCTCAGTGTTCCTGAAAAACCTCACAAAACCCGTTGTGTGT-GGGGAGC  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCTCAGTGTTCCTGAAAAACCTCACAAAACCCGTTGTGTGTGGGGGAGC  900

seq1  TCCATAGAGACAGGCCCTGCCCAGGTGATGTCATAGTTTCGTGT-GGTGG  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCATAGAGACAGGCCCTGCCCAGGTGATGTCATAGTTTCGTGTGGGTGG  950

seq1  ATGGCGGAACCCTCTCAGAGGTGCAT-GGACATAGATCAGAGAGCAGCTT  997
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGGCGGAACCCTCTCAGAGGTGCATGGGACATAGATCAGAGAGCAGCTT  1000

seq1  CAAGGCATTCTTATTCCACTA-TGTGGG-TTTTAGGGA-TCAGAC-TCAG  1043
      ||||||||||||||||||||| |||||| ||||||||| |||||| ||||
seq2  CAAGGCATTCTTATTCCACTATTGTGGGTTTTTAGGGATTCAGACTTCAG  1050

seq1  GTCATCATG-CCTTGTGGCAAGTGCCTTTACCT--GCTGAG-ACATC-TT  1088
      ||||||||| ||||||||| |||||||||||||   ||||| | ||| ||
seq2  GTCATCATGCCCTTGTGGC-AGTGCCTTTACCTTGCCTGAGAAAATCTTT  1099

seq1  ACCAGTTCAATGCCCAGCCTTT-TATATAGACAC-TGGGA-TCCAA  1131
      | |||||| ||||||||||||| ||||||||||| ||||| |||||
seq2  AACAGTTC-ATGCCCAGCCTTTATATATAGACACTTGGGATTCCAA  1144

seq1: chr2_165005620_165005670
seq2: B6Ng01-320I09.g_119_169 (reverse)

seq1  CCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  50
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  CCTTTCCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCTTTCCTTC  50

seq1  C  51
      |
seq2  C  51