BAC Information

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BAC

Clone NameB6Ng01-320J18
Chromosome7 (Build37)
Map Location 89,916,725 - 90,069,315
singlet/doubletdoublet
Overlap geneEftud1, LOC100038986, LOC619808, Rkhd3
Upstream gene3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik
Downstream geneLOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320J18.bB6Ng01-320J18.g
ACCGA109935GA109936
length9881,040
definitionB6Ng01-320J18.b B6Ng01-320J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,068,696 - 90,069,315)(89,916,725 - 89,917,763)
sequence
gaattctatgtgaaacttggagctgccagagcctcggggttaaatttttc
atggtaagatggtttccctcagtgcacacataggccatggattagtcagg
agtctgctgcacccataagtttgtatattagtcaggcttctctactggac
agaactaagagaactgtgtgtcataaaggaggactcactagagtgactca
aaactatcgtccaaggggtccaaccatggctatatccttacagaaagacc
aagaaccctgtagttgttcaatccctgagtctagatgtttcagctactct
tcagtctatgttggaataacaaagaagtaggttctaataccagcaaagga
atgagtgtctcagcttcaggatagacaaacttgctagagagaatgaggat
aaacaggcaaaaagcaaaagtgtctttcttccttgttctttgatgtgggc
tgccaccagatttaggaagggtctttctacctcaaataatccgattatga
aaaatccctcacaggcgtgcccagatgcgtgggttttagttgagtcctga
tgtagtcaacttaacaaccaagattacccctcacaggttgccatggatag
aaacttcagaaacccagggtcgtggtggatcccaactgtgtccattaacc
agtgccatgtatgtggtagggaaaaggtacgtttttgtccatgaatagaa
tactcatggaagaaatatatacaaatcccactggtttcctgacagtaaat
ggtaaaaagtataatcattgggcaagagaagacaagcccagtatgagatg
gataaggaaaggtctagagctgtggttctcaacctgtgggttgtgacccc
cacaggagatcatgcataagatattctgaatatcagatatttacattaca
attcataacagtaataaaattacagttatgacatagcaacaaagtaatct
tatggtttgggggtcaccacaacatgagaagctgtttt
gaattcctcgtaataaccaggccagggacaggctgaagcaccagcagtgt
agtcatgctcagaacccttctagctgagcagctcctgctgctgctgtttt
cctatagaactcgggtctgaagtcacatgaacaagggaaggactgactgg
tctgatgcttctgtcccagtgaagggataacaaagtattcacagtgagca
gcctgggtcagaaatgcgagttgattccccactgacagcagtggcagggt
tagaaggtgtctaaaggtgtcttccaagctttgggcagagctgtcctggg
agcccagtgactatgggaagctttcttacagggtttccatcactaggcct
ctgttgtaggatgtagttctagtagataaaattgagtggctcaaaaatgt
atggttaattacattcagtttcaattacgagtattgatcccaactgttgc
tctggcccctggaggagaaaaattggcagcctgagaaccagcagtcacct
atttatgctcactagcccttgtcacaactcgtttacccgttttcctagtc
tttcttaccctactgcttcccagtcactttcataaactaccttagttttt
tttttcttagaatgtggggctaggaagatagttcagtggatataactgct
tgtcccagaagcctaaggactaaaattctaatctctagagcaaatgcaaa
agccagatgtgtgtcgtaaacatctgggatcccagcactcctaaggggga
gtggaggtggagacgctaggacccccaaaggttcatgaaccagctaccat
ggtgtacacagcagaaaaacatcaaagagaccctgtcttaaaccacacag
aaaggtgaggaccttctcctgaccaccatgcaaatactgtggcttgtgca
caccagcatggacacatataacacacacacaataataacaaaacgttttt
tcttagaatagaataaaataaagatgacttactcacacgtactgtgtatt
tccataagtgtgtatgtgtgtgtgtgtcgtgtgtgtcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_90068696_90069315
seq2: B6Ng01-320J18.b_45_664 (reverse)

seq1  ACCCTGGGTTTCTGAAGTTTCTATCCATGGCAACCTGTGAGGGGTAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGTTTCTGAAGTTTCTATCCATGGCAACCTGTGAGGGGTAATCT  50

seq1  TGGTTGTTAAGTTGACTACATCAGGACTCAACTAAAACCCACGCATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTAAGTTGACTACATCAGGACTCAACTAAAACCCACGCATCTGG  100

seq1  GCACGCCTGTGAGGGATTTTTCATAATCGGATTATTTGAGGTAGAAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCCTGTGAGGGATTTTTCATAATCGGATTATTTGAGGTAGAAAGAC  150

seq1  CCTTCCTAAATCTGGTGGCAGCCCACATCAAAGAACAAGGAAGAAAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTAAATCTGGTGGCAGCCCACATCAAAGAACAAGGAAGAAAGACA  200

seq1  CTTTTGCTTTTTGCCTGTTTATCCTCATTCTCTCTAGCAAGTTTGTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTTTTGCCTGTTTATCCTCATTCTCTCTAGCAAGTTTGTCTAT  250

seq1  CCTGAAGCTGAGACACTCATTCCTTTGCTGGTATTAGAACCTACTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCTGAGACACTCATTCCTTTGCTGGTATTAGAACCTACTTCTTT  300

seq1  GTTATTCCAACATAGACTGAAGAGTAGCTGAAACATCTAGACTCAGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCAACATAGACTGAAGAGTAGCTGAAACATCTAGACTCAGGGAT  350

seq1  TGAACAACTACAGGGTTCTTGGTCTTTCTGTAAGGATATAGCCATGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACTACAGGGTTCTTGGTCTTTCTGTAAGGATATAGCCATGGTTG  400

seq1  GACCCCTTGGACGATAGTTTTGAGTCACTCTAGTGAGTCCTCCTTTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTTGGACGATAGTTTTGAGTCACTCTAGTGAGTCCTCCTTTATGA  450

seq1  CACACAGTTCTCTTAGTTCTGTCCAGTAGAGAAGCCTGACTAATATACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTTCTCTTAGTTCTGTCCAGTAGAGAAGCCTGACTAATATACAA  500

seq1  ACTTATGGGTGCAGCAGACTCCTGACTAATCCATGGCCTATGTGTGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGGGTGCAGCAGACTCCTGACTAATCCATGGCCTATGTGTGCACT  550

seq1  GAGGGAAACCATCTTACCATGAAAAATTTAACCCCGAGGCTCTGGCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAACCATCTTACCATGAAAAATTTAACCCCGAGGCTCTGGCAGCT  600

seq1  CCAAGTTTCACATAGAATTC  620
      ||||||||||||||||||||
seq2  CCAAGTTTCACATAGAATTC  620

seq1: chr7_89916725_89917763
seq2: B6Ng01-320J18.g_66_1105

seq1  GAATTCCTCGTAATAACCAGGCCAGGGACAGGCTGAAGCACCAGCAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGTAATAACCAGGCCAGGGACAGGCTGAAGCACCAGCAGTGT  50

seq1  AGTCATGCTCAGAACCCTTCTAGCTGAGCAGCTCCTGCTGCTGCTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGCTCAGAACCCTTCTAGCTGAGCAGCTCCTGCTGCTGCTGTTTT  100

seq1  CCTATAGAACTCGGGTCTGAAGTCACATGAACAAGGGAAGGACTGACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGAACTCGGGTCTGAAGTCACATGAACAAGGGAAGGACTGACTGG  150

seq1  TCTGATGCTTCTGTCCCAGTGAAGGGATAACAAAGTATTCACAGTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCTTCTGTCCCAGTGAAGGGATAACAAAGTATTCACAGTGAGCA  200

seq1  GCCTGGGTCAGAAATGCGAGTTGATTCCCCACTGACAGCAGTGGCAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTCAGAAATGCGAGTTGATTCCCCACTGACAGCAGTGGCAGGGT  250

seq1  TAGAAGGTGTCTAAAGGTGTCTTCCAAGCTTTGGGCAGAGCTGTCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGTGTCTAAAGGTGTCTTCCAAGCTTTGGGCAGAGCTGTCCTGGG  300

seq1  AGCCCAGTGACTATGGGAAGCTTTCTTACAGGGTTTCCATCACTAGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTGACTATGGGAAGCTTTCTTACAGGGTTTCCATCACTAGGCCT  350

seq1  CTGTTGTAGGATGTAGTTCTAGTAGATAAAATTGAGTGGCTCAAAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTAGGATGTAGTTCTAGTAGATAAAATTGAGTGGCTCAAAAATGT  400

seq1  ATGGTTAATTACATTCAGTTTCAATTACGAGTATTGATCCCAACTGTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATTACATTCAGTTTCAATTACGAGTATTGATCCCAACTGTTGC  450

seq1  TCTGGCCCCTGGAGGAGAAAAATTGGCAGCCTGAGAACCAGCAGTCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCCTGGAGGAGAAAAATTGGCAGCCTGAGAACCAGCAGTCACCT  500

seq1  ATTTATGCTCACTAGCCCTTGTCACAACTCGTTTACCCGTTTTCCTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCTCACTAGCCCTTGTCACAACTCGTTTACCCGTTTTCCTAGTC  550

seq1  TTTCTTACCCTACTGCTTCCCAGTCACTTTCATAAACTACCTTAGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACCCTACTGCTTCCCAGTCACTTTCATAAACTACCTTAGTTTTT  600

seq1  TTTTTCTTAGAATGTGGGGCTAGGAAGATAGTTCAGTGGATATAACTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAGAATGTGGGGCTAGGAAGATAGTTCAGTGGATATAACTGCT  650

seq1  TGTCCCAGAAGCCTAAGGACTAAAATTCTAATCTCTAGAGCAAATGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGAAGCCTAAGGACTAAAATTCTAATCTCTAGAGCAAATGCAAA  700

seq1  AGCCAGATGTGTGTCGTAAACATCTGGGATCCCAGCACTCCTAAGGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATGTGTGTCGTAAACATCTGGGATCCCAGCACTCCTAAGGGGGA  750

seq1  GTGGAGGTGGAGACGCTAGGACCCCCAAAGGTTCATGAACCAGCTACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTGGAGACGCTAGGACCCCCAAAGGTTCATGAACCAGCTACCAT  800

seq1  GGTGTACACAGCAGAAAAACATCAAAGAGACCCTGTCTTAAACCACACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACACAGCAGAAAAACATCAAAGAGACCCTGTCTTAAACCACACAG  850

seq1  -AAGGTGAGGACCTTCTCCTGACCACCATGCAAATACTGTGGCTTGTGCA  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGAGGACCTTCTCCTGACCACCATGCAAATACTGTGGCTTGTGCA  900

seq1  CACCAGCATGGACACATATAAACACACACACAATAATAACAAAACG-TTT  948
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  CACCAGCATGGACACATAT-AACACACACACAATAATAACAAAACGTTTT  949

seq1  TTCTTAGAATAGAATAAAATAAAGATGACTTACTCACACGTACTGTGTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAATAGAATAAAATAAAGATGACTTACTCACACGTACTGTGTAT  999

seq1  TTTCATAAGGTGTGTATGTGTGTGTGTGT-GTGTGTGTCAGA  1039
      || ||||| |||||||||||||||||||| ||||||||||||
seq2  TTCCATAA-GTGTGTATGTGTGTGTGTGTCGTGTGTGTCAGA  1040