BAC Information

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BAC

Clone NameB6Ng01-320M08
Chromosome7 (Build37)
Map Location 64,252,290 - 64,448,114
singlet/doubletdoublet
Overlap geneGabrg3
Upstream geneNipa1, LOC672959, Herc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320M08.bB6Ng01-320M08.g
ACCGA110055GA110056
length1,1441,076
definitionB6Ng01-320M08.b B6Ng01-320M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,252,290 - 64,253,429)(64,447,037 - 64,448,114)
sequence
gaattctgcatttgttcacctgtgttcatctatttgtttacacattagag
taggagaactaaatttgaagaattacaccaaagttccttcctatgtcaaa
gttattttgaactctggtagtccaattaaccaccccccaaccccccatgc
catagcggaaattttgttctattgtaatagacagagcagccaagggccct
actcaggaagttatttccttggttcctgctacctatccccatagtactct
atatccagctcccccttttttgacagtttaaagtgaaggtttgaaactgc
atagcaagggagaaagtgctgccaattgctgttttggtgattgatgtatt
ctagacagggaggctggtttttgtttgtttgagacagaaatagtaataac
cctcccataaaaggcctagaacattaattcttatgcactcacacagccac
tgagcccccaattggaaaaatctttctgggcatgacagagaggaagtaaa
tactatctgaagctagaacttcgcagcatgtgcaaaggaacacacaacag
aagcatcttcttccaccatgcttaccaacaacccacattggtgtctccta
acttgctcagccttagtttagttatctggaaaacaggggcactggctcag
actaaactccaaccacccttcaactataagcatctgtactagcctagact
tagcttgcaactgtatacactgaattccgatttcattcttctgtgtcttg
ctttcataagttcatggtgggtatcttcatgtggtccatcttctgctcct
tagaggagctttggtaagtgtgaattctgtgtggcatattcatgaactat
tcatgaggcagaggctgaagaggaggaagctaatccaaacttcacactag
tttcctggagcagagagcccagtgttctcttgtggtaaagggctgctctc
catttctgaagttttgccagctaagagggtgtagggcttgagcagtgcac
atgttttattgtgtcttacatttgactagtgttggtgcaaccacctccca
ccccacagaagaaatgttttcttctctctcataaactttcttttaatgca
tcatcattccctcttttttctcagagaaaagcactcttggaatt

gaattctcagtatgcagtgtgctgatgggactcaatctcttaaggtagtc
tccttgcaaatgggtgcttttcatatgcttgtttggttttatcctgaaac
cttcagttgtggacatttgaacttcaaggcacgtttcctttggtgctggc
tcagagactgttatttctccacaacattgctaacttctgtaacaatttta
gtcattttgtctgccacctttactggaagataccttttctagccatcttc
ctctgcaaactacagtgtctttcttctttactcggcatttcttattgcac
gtctgcctaagacatgcgcagcaaccatgccactgcctgggttttattct
gtcttgagaattttctccaccaaatgacttagtgcatgattttgaagtac
ttatcattcagatttttaggacactgcataaggtagccagatattttagt
gcagtgaggcatgaaagaatacaatgagaaaatgtccatcctcacggttt
ccaaatgcaaaagtccagtgataggtgggtgtggttctggcgcagtcttg
acgcacataagtagaaagagctgagctttcagaataaacttgagactaga
ggaccttctgtaagggctcgagacaatccaatggagagaaggataatgta
atgtctgtctcatatctgaaagaggagtctttaaacaatggctttgagcc
tacatgagattgtgtgctcttatactactttgagtttggaaaagtcatta
taaaaggaatgtgttcatttttcttacaaaaattatctggacatagtagt
gcatgcctttaatctcagcattctaaagacaggcaagaggatcctgtgag
ttcaaggccacccagtgctacatagtgattaccttctttttagaaagcaa
acaaacaaacaaacaaaccaacaaatgaacaaatctgatagtattaaaga
ctcaataattgctctacttggaggagatctgaatgttgaggtgaccatta
ctaagaattcaggaatgcggaccaggaaagtttcccttcttttctctctt
accttttggtgtacttattttcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_64252290_64253429
seq2: B6Ng01-320M08.b_49_1192

seq1  GAATTCTGCATTTGTTCACCTGTGTTCATCTATTTGTTTACACATTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATTTGTTCACCTGTGTTCATCTATTTGTTTACACATTAGAG  50

seq1  TAGGAGAACTAAATTTGAAGAATTACACCAAAGTTCCTTCCTATGTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAACTAAATTTGAAGAATTACACCAAAGTTCCTTCCTATGTCAAA  100

seq1  GTTATTTTGAACTCTGGTAGTCCAATTAACCACCCCCCAACCCCCCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTGAACTCTGGTAGTCCAATTAACCACCCCCCAACCCCCCATGC  150

seq1  CATAGCGGAAATTTTGTTCTATTGTAATAGACAGAGCAGCCAAGGGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCGGAAATTTTGTTCTATTGTAATAGACAGAGCAGCCAAGGGCCCT  200

seq1  ACTCAGGAAGTTATTTCCTTGGTTCCTGCTACCTATCCCCATAGTACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAAGTTATTTCCTTGGTTCCTGCTACCTATCCCCATAGTACTCT  250

seq1  ATATCCAGCTCCCCCTTTTTTGACAGTTTAAAGTGAAGGTTTGAAACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGCTCCCCCTTTTTTGACAGTTTAAAGTGAAGGTTTGAAACTGC  300

seq1  ATAGCAAGGGAGAAAGTGCTGCCAATTGCTGTTTTGGTGATTGATGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGGGAGAAAGTGCTGCCAATTGCTGTTTTGGTGATTGATGTATT  350

seq1  CTAGACAGGGAGGCTGGTTTTTGTTTGTTTGAGACAGAAATAGTAATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGGGAGGCTGGTTTTTGTTTGTTTGAGACAGAAATAGTAATAAC  400

seq1  CCTCCCATAAAAGGCCTAGAACATTAATTCTTATGCACTCACACAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATAAAAGGCCTAGAACATTAATTCTTATGCACTCACACAGCCAC  450

seq1  TGAGCCCCCAATTGGAAAAATCTTTCTGGGCATGACAGAGAGGAAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCCAATTGGAAAAATCTTTCTGGGCATGACAGAGAGGAAGTAAA  500

seq1  TACTATCTGAAGCTAGAACTTCGCAGCATGTGCAAAGGAACACACAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTGAAGCTAGAACTTCGCAGCATGTGCAAAGGAACACACAACAG  550

seq1  AAGCATCTTCTTCCACCATGCTTACCAACAACCCACATTGGTGTCTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTCTTCCACCATGCTTACCAACAACCCACATTGGTGTCTCCTA  600

seq1  ACTTGCTCAGCCTTAGTTTAGTTATCTGGAAAACAGGGGCACTGGCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCAGCCTTAGTTTAGTTATCTGGAAAACAGGGGCACTGGCTCAG  650

seq1  ACTAAACTCCAACCACCCTTCAACTATAAGCATCTGTACTAGCCTAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTCCAACCACCCTTCAACTATAAGCATCTGTACTAGCCTAGACT  700

seq1  TAGCTTGCAACTGTATACACTGAATTCCGATTTCATTCTTCTGTGTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGCAACTGTATACACTGAATTCCGATTTCATTCTTCTGTGTCTTG  750

seq1  CTTTCATAAGTTCATGGTGGGTATCTTCATGTGGTCCATCTTCTGCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAAGTTCATGGTGGGTATCTTCATGTGGTCCATCTTCTGCTCCT  800

seq1  TAGAGGAGCTTTGGTAAGTGTGAATTCTGTGTGGCATATTCATGAACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGCTTTGGTAAGTGTGAATTCTGTGTGGCATATTCATGAACTAT  850

seq1  TCATGAGGCAGAGGCTGAAGAGGAGGAAGCTAATCCAAACTTCACACTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGCAGAGGCTGAAGAGGAGGAAGCTAATCCAAACTTCACACTAG  900

seq1  TTTCCTGGAGCAGAGAGCCCAGTGTTCTCTTGTGGT-AAGGGCTGCTCTC  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTCCTGGAGCAGAGAGCCCAGTGTTCTCTTGTGGTAAAGGGCTGCTCTC  950

seq1  CA-TTCTGAAGTTTTGCCAGCTAAGAGGGTGTAGGGC-TGAGCAGTGCAC  997
      || |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATTTCTGAAGTTTTGCCAGCTAAGAGGGTGTAGGGCTTGAGCAGTGCAC  1000

seq1  ATGTTTTATTGTGTC-TACATTTGACTAAGTGTTGGTGCAAC--ACTCCC  1044
      ||||||||||||||| ||||||||||| ||||||||||||||   |||||
seq2  ATGTTTTATTGTGTCTTACATTTGACT-AGTGTTGGTGCAACCACCTCCC  1049

seq1  A-CCCACAG-AGAAATGTTTTTCTTTCTCTCATAAACTTTCTTTTTAATG  1092
      | ||||||| |||||||||||  | |||||||||||||||| ||||||| 
seq2  ACCCCACAGAAGAAATGTTTTCTTCTCTCTCATAAACTTTC-TTTTAAT-  1097

seq1  GCATTAATCA-TCCCTC-TTTTCCTCAGAGGAAAAAGCACTCTTGTAATT  1140
      ||| | |||| |||||| |||| |||||||  ||||||||||||| ||||
seq2  GCA-TCATCATTCCCTCTTTTTTCTCAGAG--AAAAGCACTCTTGGAATT  1144


seq1: chr7_64447037_64448114
seq2: B6Ng01-320M08.g_69_1144 (reverse)

seq1  TGAGAAAAATAAGTTACA-CAAAAGTAAGGAGAG-AAAGAAGGGAAAACT  48
      |||| |||||||| |||| ||||||  | ||||| ||||||||| |||||
seq2  TGAGGAAAATAAG-TACACCAAAAGGTAAGAGAGAAAAGAAGGG-AAACT  48

seq1  TTCCTTGTTCCGCATTCCTGAAATTTCCTTAGTAATGGTCACCTC-ACAT  97
      |||| || ||||||||||||||   | |||||||||||||||||| ||||
seq2  TTCC-TGGTCCGCATTCCTGAA---TTCTTAGTAATGGTCACCTCAACAT  94

seq1  TCAGATCTCCTCCAAGTAGAGCAATTATTGAGTCTTTAATACTATCAGAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTCCTCCAAGTAGAGCAATTATTGAGTCTTTAATACTATCAGAT  144

seq1  TTGTTCATTTGTTTGTTTGTTTGTTTGTTTGTTTGCTTTCTTAAAAGAAG  197
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  TTGTTCATTTGTTGGTTTGTTTGTTTGTTTGTTTGCTTTCTAAAAAGAAG  194

seq1  GT-ATCACTATGTAGCACTGGGTGGCCTTGAACTCACAGGATCCTCTTGC  246
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCACTATGTAGCACTGGGTGGCCTTGAACTCACAGGATCCTCTTGC  244

seq1  CTGTCTTTAGAATGCTGAGATTAAAGGCATGCACTACTATGTCCAGATAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTAGAATGCTGAGATTAAAGGCATGCACTACTATGTCCAGATAA  294

seq1  TTTTTGTAAGAAAAATGAACACATTCCTTTTATAATGACTTTTCCAAACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAAGAAAAATGAACACATTCCTTTTATAATGACTTTTCCAAACT  344

seq1  CAAAGTAGTATAAGAGCACACAATCTCATGTAGGCTCAAAGCCATTGTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGTATAAGAGCACACAATCTCATGTAGGCTCAAAGCCATTGTTT  394

seq1  AAAGACTCCTCTTTCAGATATGAGACAGACATTACATTATCCTTCTCTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCCTCTTTCAGATATGAGACAGACATTACATTATCCTTCTCTCC  444

seq1  ATTGGATTGTCTCGAGCCCTTACAGAAGGTCCTCTAGTCTCAAGTTTATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTGTCTCGAGCCCTTACAGAAGGTCCTCTAGTCTCAAGTTTATT  494

seq1  CTGAAAGCTCAGCTCTTTCTACTTATGTGCGTCAAGACTGCGCCAGAACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCTCAGCTCTTTCTACTTATGTGCGTCAAGACTGCGCCAGAACC  544

seq1  ACACCCACCTATCACTGGACTTTTGCATTTGGAAACCGTGAGGATGGACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACCTATCACTGGACTTTTGCATTTGGAAACCGTGAGGATGGACA  594

seq1  TTTTCTCATTGTATTCTTTCATGCCTCACTGCACTAAAATATCTGGCTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATTGTATTCTTTCATGCCTCACTGCACTAAAATATCTGGCTAC  644

seq1  CTTATGCAGTGTCCTAAAAATCTGAATGATAAGTACTTCAAAATCATGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCAGTGTCCTAAAAATCTGAATGATAAGTACTTCAAAATCATGCA  694

seq1  CTAAGTCATTTGGTGGAGAAAATTCTCAAGACAGAATAAAACCCAGGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCATTTGGTGGAGAAAATTCTCAAGACAGAATAAAACCCAGGCAG  744

seq1  TGGCATGGTTGCTGCGCATGTCTTAGGCAGACGTGCAATAAGAAATGCCG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGTTGCTGCGCATGTCTTAGGCAGACGTGCAATAAGAAATGCCG  794

seq1  AGTAAAGAAGAAAGACACTGTAGTTTGCAGAGGAAGATGGCTAGAAAAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAAGAAAGACACTGTAGTTTGCAGAGGAAGATGGCTAGAAAAGG  844

seq1  TATCTTCCAGTAAAGGTGGCAGACAAAATGACTAAAATTGTTACAGAAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCAGTAAAGGTGGCAGACAAAATGACTAAAATTGTTACAGAAGT  894

seq1  TAGCAATGTTGTGGAGAAATAACAGTCTCTGAGCCAGCACCAAAGGAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGTTGTGGAGAAATAACAGTCTCTGAGCCAGCACCAAAGGAAAC  944

seq1  GTGCCTTGAAGTTCAAATGTCCACAACTGAAGGTTTCAGGATAAAACCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTGAAGTTCAAATGTCCACAACTGAAGGTTTCAGGATAAAACCAA  994

seq1  ACAAGCATATGAAAAGCACCCATTTGCAAGGAGACTACCTTAAGAGATTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCATATGAAAAGCACCCATTTGCAAGGAGACTACCTTAAGAGATTG  1044

seq1  AGTCCCATCAGCACACTGCATACTGAGAATTC  1078
      ||||||||||||||||||||||||||||||||
seq2  AGTCCCATCAGCACACTGCATACTGAGAATTC  1076


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