BAC Information

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BAC

Clone NameB6Ng01-321C04
Chromosome7 (Build37)
Map Location 49,983,949 - 49,985,154
singlet/doubletsinglet
Overlap geneEG546965
Upstream geneEG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179
Downstream geneLOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321C04.bB6Ng01-321C04.g
ACCGA110325GA110326
length1,181861
definitionB6Ng01-321C04.b B6Ng01-321C04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtacacacaaccaacagaaatggagacagcaaattgtattat
catatttgagcagacttatttacagatatgtaacaagaaaggaattggct
gggaagaatttaggaagggctgcagagaggacaagaaagaggaaaatgat
ataacatatcttatgatatataaaaataaatgttaaacaaagggcagttg
ctagacgaatggcttagcagttaagaccacagcatgtttttacagaggtt
atagatcccatactcataaaacatatagtagttacctagtaactgctgta
gctccagtcccaaggtatttgatgatctcttctggctttctttgtattgt
gcacagataagttcaggcaaaacccagccattcctatgtaaaatcaaaat
aaagtttaaaaagagtagcatactctacatctatgtcacaaccagtaggc
acacaatacttaaggctagttaaagtgtactcagtctttatggttgttca
tggaagcagctatgaacttctttgagccagcctcctcacaggctaaagca
gcctcattttgaagttagaacagttcagcatatctgttcttctaaggaca
acattcaaaatgctgataactgacctttccttgaagtttttgtatttgtg
ctctctgttctttgtatattagaattgtggcattgatacatatatcggtt
aaatcatacattatggttaacaggtatcactgagcaatctactttcacaa
catcatttatttacttgattagctactaagaccttatggtataaggtgaa
catctttgagggatttctgtccatcatttatgccattttgcatatgtttc
tgaatgattttgattgaagaatgcccttgaatatctctactttttacatt
gtgactatgttcagaagtggacttatttaacttaggattcttaggagtaa
gtgagcctgattgtgaacatatccagactccctaagtagatcctaatgcc
tctttattgataagaataaaagcatgctttggaaatggctcccaggtttt
ctttctgtacatgaagactttttctcagttctttctgtcttgctctgtga
tgtattctcgtagtggtattagtcaagattccttaagtcaagttagatct
gccatagtagcgattgttgttgactttacag
gaattctacgtaactaaggggtcatgtcctattatttggcaatgtacccg
gttcattctgaggttgttccaggagacccttatctcaaaaatgttcttgg
aacagtctctaaggtgaggagttcaggaatgcattctggggtgaagagtt
caggagtgttctgggaacaatctctagatgtgaggggtcgggctctgggg
tgaggaagagttcagtaattttttatctttattcttcaccagcattcccc
tctcaccaatggataggttattgagagaaactaaacagaaataatgaaat
taacagaggttatgagtgaaatagccctaccagatatctaaagaacattt
caaccaaacacaaaagactattccttcttctcagcacctcatagagcctt
tttcaaaattgaccatatactcagtgacaaagtttcaacaggccagggcc
tgacaaacacagagacagatactcacagctagccattggactgaaagtag
ggttcccaatggaaaaaatagagaaaggactgaaggagctgaaggggttt
cctcataggaagagcaacaatatcaaacaaccagaccagagctatcaggg
actaaaccaccaaccaaggagtacacatggagggacctgtggctccagcc
gcttgtgtagcagaggatggccttgttgggcatcaatgggagaagaggcc
cttggtcctgtgaaggctagatgccctagtataggggaatttgaggtcag
ggaggcaggagtgggtggatgagttggggaacatcttcacagaagcaggg
ggaggggggattaattatggatgggaggcctcccccttactagatcatag
ctatactctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49983949_49985154
seq2: B6Ng01-321C04.b_46_1226 (reverse)

seq1  CTGT-AAGTCAACAACAAATTCCCTTACTTATAGGCACGACCCCTAACCT  49
      |||| |||||||||||||  || | ||| ||| |||| ||   |||||  
seq2  CTGTAAAGTCAACAACAA--TCGC-TAC-TAT-GGCA-GA--TCTAAC--  40

seq1  CTGTGACTCTAGGGAACCCTGACTAATACAACTACCGAGAATAACCATCA  99
         ||||| || |||| | |||||||||| |||| ||||||||  |||||
seq2  --TTGACT-TAAGGAATCTTGACTAATACCACTA-CGAGAATA--CATCA  84

seq1  CAAGAGCAAGGACAG-AAGAACTGAGAAAAATGTCTTTCATGTTACAGGA  148
      | ||||||| ||||| ||||||||||||||| ||| |||||| |||||  
seq2  C-AGAGCAA-GACAGAAAGAACTGAGAAAAA-GTC-TTCATG-TACAG--  127

seq1  AAGGAAAACCTGGGAGCCATTTCCAAAGCAATGCTTTTATTCTTTATCAA  198
      || |||||||||||||||||||||||||| |||||||||||| |||||||
seq2  AAAGAAAACCTGGGAGCCATTTCCAAAGC-ATGCTTTTATTC-TTATCAA  175

seq1  TAAAAGAGGCATTAGGATTCTACTTAGGGAGTCTGGATATGTTCACAATC  248
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  T-AAAGAGGCATTAGGA-TCTACTTAGGGAGTCTGGATATGTTCACAATC  223

seq1  AGGCTCACTTACTCCTAAGAATCCTAAGTTAAATAAGTCCACTTCTGAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACTTACTCCTAAGAATCCTAAGTTAAATAAGTCCACTTCTGAAC  273

seq1  ATAGTCACAATGTAAAAAGTAGAGATATTCAAGGGCATTCTTCAATCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACAATGTAAAAAGTAGAGATATTCAAGGGCATTCTTCAATCAAA  323

seq1  ATCATTCAGAAACATATGCAAAATGGCATAAATGATGGACAGAAATCCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCAGAAACATATGCAAAATGGCATAAATGATGGACAGAAATCCCT  373

seq1  CAAAGATGTTCACCTTATACCATAAGGTCTTAGTAGCTAATCAAGTAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGTTCACCTTATACCATAAGGTCTTAGTAGCTAATCAAGTAAAT  423

seq1  AAATGATGTTGTGAAAGTAGATTGCTCAGTGATACCTGTTAACCATAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGTTGTGAAAGTAGATTGCTCAGTGATACCTGTTAACCATAATG  473

seq1  TATGATTTAACCGATATATGTATCAATGCCACAATTCTAATATACAAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTAACCGATATATGTATCAATGCCACAATTCTAATATACAAAGA  523

seq1  ACAGAGAGCACAAATACAAAAACTTCAAGGAAAGGTCAGTTATCAGCATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGCACAAATACAAAAACTTCAAGGAAAGGTCAGTTATCAGCATT  573

seq1  TTGAATGTTGTCCTTAGAAGAACAGATATGCTGAACTGTTCTAACTTCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTTGTCCTTAGAAGAACAGATATGCTGAACTGTTCTAACTTCAA  623

seq1  AATGAGGCTGCTTTAGCCTGTGAGGAGGCTGGCTCAAAGAAGTTCATAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGCTGCTTTAGCCTGTGAGGAGGCTGGCTCAAAGAAGTTCATAGC  673

seq1  TGCTTCCATGAACAACCATAAAGACTGAGTACACTTTAACTAGCCTTAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCATGAACAACCATAAAGACTGAGTACACTTTAACTAGCCTTAAG  723

seq1  TATTGTGTGCCTACTGGTTGTGACATAGATGTAGAGTATGCTACTCTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTGCCTACTGGTTGTGACATAGATGTAGAGTATGCTACTCTTTT  773

seq1  TAAACTTTATTTTGATTTTACATAGGAATGGCTGGGTTTTGCCTGAACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTATTTTGATTTTACATAGGAATGGCTGGGTTTTGCCTGAACTT  823

seq1  ATCTGTGCACAATACAAAGAAAGCCAGAAGAGATCATCAAATACCTTGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCACAATACAAAGAAAGCCAGAAGAGATCATCAAATACCTTGGG  873

seq1  ACTGGAGCTACAGCAGTTACTAGGTAACTACTATATGTTTTATGAGTATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCTACAGCAGTTACTAGGTAACTACTATATGTTTTATGAGTATG  923

seq1  GGATCTATAACCTCTGTAAAAACATGCTGTGGTCTTAACTGCTAAGCCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTATAACCTCTGTAAAAACATGCTGTGGTCTTAACTGCTAAGCCAT  973

seq1  TCGTCTAGCAACTGCCCTTTGTTTAACATTTATTTTTATATATCATAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTAGCAACTGCCCTTTGTTTAACATTTATTTTTATATATCATAAGA  1023

seq1  TATGTTATATCATTTTCCTCTTTCTTGTCCTCTCTGCAGCCCTTCCTAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATATCATTTTCCTCTTTCTTGTCCTCTCTGCAGCCCTTCCTAAA  1073

seq1  TTCTTCCCAGCCAATTCCTTTCTTGTTACATATCTGTAAATAAGTCTGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCAGCCAATTCCTTTCTTGTTACATATCTGTAAATAAGTCTGCT  1123

seq1  CAAATATGATAATACAATTTGCTGTCTCCATTTCTGTTGGTTGTGTGTAC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGATAATACAATTTGCTGTCTCCATTTCTGTTGGTTGTGTGTAC  1173

seq1  ATGAATTC  1206
      ||||||||
seq2  ATGAATTC  1181