BAC Information

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BAC

Clone NameB6Ng01-321C05
Chromosome7 (Build37)
Map Location 131,366,487 - 131,512,681
singlet/doubletdoublet
Overlap geneEG628779
Upstream geneSlc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG545999, LOC670828, 4933440M02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321C05.bB6Ng01-321C05.g
ACCGA110327GA110328
length1,0791,213
definitionB6Ng01-321C05.b B6Ng01-321C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,366,487 - 131,367,553)(131,511,448 - 131,512,681)
sequence
gaattccagaaataaacaattcttaaacctcgacatagctttttttaact
gcacattgtcataattgttctgttttattcttagacgttattaatctttc
actgtgcctaatttataaattatacttcacggatggaaggtataaataca
taggaaaaagcagtaagtataatatagtttttgatggtttgtgtggttca
gtcatttgtgaaagccctggaatatgccctctacatagaagggggctcca
ctggacagaagaagaaacaaacagagttagcagttagctcaagattgctg
agggaggacttccagctgggggtctagagttagtccatctggccacaaga
gccaggagggaagtgaataggcatggggcagtctctggctggggcttccc
caggcagtttacagcagctggcagcaacactacaattttcctgttcaggg
tggttgtgggttcggacccacttgtcagtgttaatggtcaacaggactga
cctaaacagcaataccctatctccagagccatgtacagtatcaaccttag
tcacaatggacataggtctagtcagccaagacacttagagcaaattgcaa
ctaaggacatgatgctggatacataggaggggcataaaagtcctgggaga
tggttggcagacagttggggagccttgagtatggaatttgggtatggaag
aagagtacaattttattttgttcttactggctgaaagatagatggcttat
gagttacgtatttcatcgtctttatgtttgtgaagtggttttcctgccag
ggttcatgggtttgtgtgtaaaaacccaggcagtggcttaaacacagatt
actttctcagcagtgctgagttctgttggaaagattgttgagataggcaa
ttggggtcagtacttaggcagaaaacgctaacaaaattctccaagatgtt
aactacgaatagttacaaaaagaacatggaacagctctccccttcccaga
tgtgcttcaccttcttgtcccaagtctgggcactttccttggcatcaaac
tggtcccttttccactaacccatgaaagc

gaattccaggtatgtgaaagggaagaacaagaatggccctgatttccccc
agaggacaaaagaaagaccagagctgatgggaggaactgagacagacatt
agtggataatttggggaggtccattctaggtgctaaccaggcccacggga
agaagtgttggccatcttgccgaaagcaatctatagattcaatgcaaacc
ccatcaaaattccaactcgattcttcacagagttaggaagggcaatttgt
aaattcctctggaataacaaaaaacctggggtagcaaaaactcttctcaa
caataaaagaatctctggtggaatcaccatccctgacctaaagctttact
acagagcaattgtgattaaaaactgcatgatactggtatagcgacagaca
ggtatcaatggaatagaattgaagactcagaaataaacccacatacctat
ggtcacttgatctttgacaagggagctaaaaccatccagtggaaaaaaga
cagcattttcaacaaatggtgctggctcaactggcttttagcatgtagaa
gaatgcgaattgatccattcttatctccttgtacaaatctcaagtctaag
tggatcaaggaactccacataaaaccagagacactgaaacttacagaaga
gaaagtggggaaaagcctcgaagatatgggcacaggggaaaaattcctga
acagaacagcaatggcttgtgctgtaagatcaagaatcgacaaatgggac
cttctaaaattgcaaagcttctgaaggcaaaggacactgtcaataagaca
aaaaggccaccaaaagatagggaaatatctttaccaatcctaaatccgat
aggggactaatagtcaatatatagagagagagttttacaaaggagaggta
cagatctatacttagacatgaatggaaaatcattgtctaaaactgtttat
gagagtaaatgtaggagggcaaggtccagcgcatcactctgtgagaacct
ttactaacggagcttatactattgttagaggtacatgtgggttctcctct
agatgcttacttctgccaggacaacattccccaaaatcagcagatgacga
ctgtaagacgcatgacatgggaggtgaatttaccttgcacattcttttct
ggccttactgcattggacctcagcaatcagaccgaatgttctcgaatgaa
tttgactgctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_131366487_131367553
seq2: B6Ng01-321C05.b_48_1123

seq1  GAATTCCAGAAATAAACAATTCTTAAACCTCGACATAGCTTTTTTTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAATAAACAATTCTTAAACCTCGACATAGCTTTTTTTAACT  50

seq1  GCACATTGTCATAATTGTTCTGTTTTATTCTTAGACGTTATTAATCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTGTCATAATTGTTCTGTTTTATTCTTAGACGTTATTAATCTTTC  100

seq1  ACTGTGCCTAATTTATAAATTATACTTCACGGATGGAAGGTATAAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCCTAATTTATAAATTATACTTCACGGATGGAAGGTATAAATACA  150

seq1  TAGGAAAAAGCAGTAAGTATAATATAGTTTTTGATGGTTTGTGTGGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAAAGCAGTAAGTATAATATAGTTTTTGATGGTTTGTGTGGTTCA  200

seq1  GTCATTTGTGAAAGCCCTGGAATATGCCCTCTACATAGAAGGGGGCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGTGAAAGCCCTGGAATATGCCCTCTACATAGAAGGGGGCTCCA  250

seq1  CTGGACAGAAGAAGAAACAAACAGAGTTAGCAGTTAGCTCAAGATTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGAAGAAGAAACAAACAGAGTTAGCAGTTAGCTCAAGATTGCTG  300

seq1  AGGGAGGACTTCCAGCTGGGGGTCTAGAGTTAGTCCATCTGGCCACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGACTTCCAGCTGGGGGTCTAGAGTTAGTCCATCTGGCCACAAGA  350

seq1  GCCAGGAGGGAAGTGAATAGGCATGGGGCAGTCTCTGGCTGGGGCTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGGGAAGTGAATAGGCATGGGGCAGTCTCTGGCTGGGGCTTCCC  400

seq1  CAGGCAGTTTACAGCAGCTGGCAGCAACACTACAATTTTCCTGTTCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTTTACAGCAGCTGGCAGCAACACTACAATTTTCCTGTTCAGGG  450

seq1  TGGTTGTGGGTTCGGACCCACTTGTCAGTGTTAATGGTCAACAGGACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGGGTTCGGACCCACTTGTCAGTGTTAATGGTCAACAGGACTGA  500

seq1  CCTAAACAGCAATACCCTATCTCCAGAGCCATGTACAGTATCAACCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACAGCAATACCCTATCTCCAGAGCCATGTACAGTATCAACCTTAG  550

seq1  TCACAATGGACATAGGTCTAGTCAGCCAAGACACTTAGAGCAAATTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGGACATAGGTCTAGTCAGCCAAGACACTTAGAGCAAATTGCAA  600

seq1  CTAAGGACATGATGCTGGATACATAGGAGGGGCATAAAAGTCCTGGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGACATGATGCTGGATACATAGGAGGGGCATAAAAGTCCTGGGAGA  650

seq1  TGGTTGGCAGACAGTTGGGGAGCCTTGAGTATGGAATTTGGGTATGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCAGACAGTTGGGGAGCCTTGAGTATGGAATTTGGGTATGGAAG  700

seq1  AAGAGTACAATTTTATTTTGTTCTTACTGGCTGAAAGATAGATGGCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACAATTTTATTTTGTTCTTACTGGCTGAAAGATAGATGGCTTAT  750

seq1  GAGTTACGTATTTCATCGTCTTTATG-TTGTGAAGTGGTTTTCCTGCCAG  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGTTACGTATTTCATCGTCTTTATGTTTGTGAAGTGGTTTTCCTGCCAG  800

seq1  GGTTCATGGGTTTGTGTGTAAAAACCCAGGCAGTGGCTTAAACACAGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGGGTTTGTGTGTAAAAACCCAGGCAGTGGCTTAAACACAGATT  850

seq1  ACTTTCTCAGCAGTGCTGAG-TCTGTTGGAAAGATTGTTGAGATAGGCAA  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTTTCTCAGCAGTGCTGAGTTCTGTTGGAAAGATTGTTGAGATAGGCAA  900

seq1  TTGGGGTCAGTACTTAGGCAGAAAACGCTAACAAAATTCTCCAAGATGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTCAGTACTTAGGCAGAAAACGCTAACAAAATTCTCCAAGATGTT  950

seq1  AACTACG-ATAGTTACAAAAAGAACATGG-ACAGCTCT-CCCTTCCCAGA  995
      ||||||| ||||||||||||||||||||| |||||||| |||||||||||
seq2  AACTACGAATAGTTACAAAAAGAACATGGAACAGCTCTCCCCTTCCCAGA  1000

seq1  TGTGC-TCACCTTCTTGTCCCAAAGTCTGGGCAC-TTCCTTGGCATCAAA  1043
      ||||| ||||||||||||||| |||||||||||| |||||||||||||||
seq2  TGTGCTTCACCTTCTTGTCCC-AAGTCTGGGCACTTTCCTTGGCATCAAA  1049

seq1  CTG--TCCTTTTCCACT-ACCCATGAA  1067
      |||   ||||||||||| |||||||||
seq2  CTGGTCCCTTTTCCACTAACCCATGAA  1076


seq1: chr7_131511448_131512681
seq2: B6Ng01-321C05.g_68_1280 (reverse)

seq1  AAGA-CAGTCAAATTCA-TCGAGAACCATCTGGTTCCTGATTGGCTGAGG  48
      |||| |||||||||||| ||||||| |||  |||  |||||| |||||||
seq2  AAGAGCAGTCAAATTCATTCGAGAA-CATTCGGT--CTGATT-GCTGAGG  46

seq1  CTCCACTGCCAGTAA-GCCAGGAAAGAGATGTTGCAAGTTAATATCACTT  97
       |||| || |||||| ||||| ||||| ||| |||||| |||  |||| |
seq2  -TCCAATG-CAGTAAGGCCAGAAAAGA-ATG-TGCAAGGTAAATTCACCT  92

seq1  CCCATTGTCATGCGTCCTTTACAGTTCGTCATCTGCTGATTTTGGGGGGA  147
      |||| |||||||||||  |||||| ||||||||||||||||||||||   
seq2  CCCA-TGTCATGCGTC--TTACAG-TCGTCATCTGCTGATTTTGGGG---  135

seq1  AATGGTTGTCCTTGGGCCAGAAGGTAAGCATCTAGAGAGAAACCCCACAT  197
      ||| ||||||||   | ||||| |||||||||||||| || | |||||| 
seq2  AAT-GTTGTCCT---GGCAGAA-GTAAGCATCTAGAG-GAGAACCCACA-  178

seq1  TGTACCCTCTAACAATAGTATAAGCTCCGTTAGTAAAGGTTCTCACAGAG  247
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTA-CCTCTAACAATAGTATAAGCTCCGTTAGTAAAGGTTCTCACAGAG  227

seq1  TGATGCGCTGGACCTTGCCCTCCTACATTTACTCTCATAAACAGTTTTTA  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGATGCGCTGGACCTTGCCCTCCTACATTTACTCTCATAAACAG-TTTTA  276

seq1  GACAATGATTTTCCATTCATGTCTAAGTATAGATCTGTACCTCTCCTTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGATTTTCCATTCATGTCTAAGTATAGATCTGTACCTCTCCTTTG  326

seq1  TAAAACTCTCTCTCTATATATTGACTATTAGTCCCCTATCGGATTTAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCTCTCTCTATATATTGACTATTAGTCCCCTATCGGATTTAGGA  376

seq1  TTGGTAAAGATATTTCCCTATCTTTTGGTGGCCTTTTTGTCTTATTGACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAGATATTTCCCTATCTTTTGGTGGCCTTTTTGTCTTATTGACA  426

seq1  GTGTCCTTTGCCTTCAGAAGCTTTGCAATTTTAGAAGGTCCCATTTGTCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTTGCCTTCAGAAGCTTTGCAATTTTAGAAGGTCCCATTTGTCG  476

seq1  ATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTC  526

seq1  CCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTCTTCTGTAAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTCTTCTGTAAGTT  576

seq1  TCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGACTTGAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGACTTGAGA  626

seq1  TTTGTACAAGGAGATAAGAATGGATCAATTCGCATTCTTCTACATGCTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAAGGAGATAAGAATGGATCAATTCGCATTCTTCTACATGCTAA  676

seq1  AAGCCAGTTGAGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTTGAGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACT  726

seq1  GGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTATGTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTATGTGGG  776

seq1  TTTATTTCTGAGTCTTCAATTCTATTCCATTGATACCTGTCTGTCGCTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTGAGTCTTCAATTCTATTCCATTGATACCTGTCTGTCGCTAT  826

seq1  ACCAGTATCATGCAGTTTTTAATCACAATTGCTCTGTAGTAAAGCTTTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTATCATGCAGTTTTTAATCACAATTGCTCTGTAGTAAAGCTTTAG  876

seq1  GTCAGGGATGGTGATTCCACCAGAGATTCTTTTATTGTTGAGAAGAGTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGATGGTGATTCCACCAGAGATTCTTTTATTGTTGAGAAGAGTTT  926

seq1  TTGCTACCCCAGGTTTTTTGTTATTCCAGAGGAATTTACAAATTGCCCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACCCCAGGTTTTTTGTTATTCCAGAGGAATTTACAAATTGCCCTT  976

seq1  CCTAACTCTGTGAAGAATCGAGTTGGAATTTTGATGGGGTTTGCATTGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTCTGTGAAGAATCGAGTTGGAATTTTGATGGGGTTTGCATTGAA  1026

seq1  TCTATAGATTGCTTTCGGCAAGATGGCCAACACTTCTTCCCGTGGGCCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGATTGCTTTCGGCAAGATGGCCAACACTTCTTCCCGTGGGCCTG  1076

seq1  GTTAGCACCTAGAATGGACCTCCCCAAATTATCCACTAATGTCTGTCTCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCACCTAGAATGGACCTCCCCAAATTATCCACTAATGTCTGTCTCA  1126

seq1  GTTCCTCCCATCAGCTCTGGTCTTTCTTTTGTCCTCTGGGGGAAATCAGG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCCATCAGCTCTGGTCTTTCTTTTGTCCTCTGGGGGAAATCAGG  1176

seq1  GCCATTCTTGTTCTTCCCTTTCACATACCTGGAATTC  1234
      |||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTTGTTCTTCCCTTTCACATACCTGGAATTC  1213


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