BAC Information

Click to search

BAC

Clone NameB6Ng01-321J12
Chromosome7 (Build37)
Map Location 54,419,242 - 54,461,541
singlet/doubletdoublet
Overlap geneMrgpra6
Upstream geneAbcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710
Downstream geneEG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4, Mrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335, Mrgprb5, Mrgprb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321J12.bB6Ng01-321J12.g
ACCGA110656GA110657
length7931,230
definitionB6Ng01-321J12.b B6Ng01-321J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,460,999 - 54,461,541)(54,419,242 - 54,420,501)
sequence
gaattcccatgctcagctggccttctccactttatccagactggaagcct
agctgtattacacacttttatcctgctgtgatagtattgcaaccaaggca
atttaagggagtttatttgggcttaaggttcaagagggttacaagtgcat
ccatccagtacagcaggaagcttggtggctggagcaggatgagaagtcac
atcctccagcagagaacaaacttagaatgacaccagtttttaaactctca
aatcccacccacagtgatgcacttccccaccaaggccacaccccctatgc
cttcttaaacaatgccaccaagcatggaccaagtgttcaaatacaggagc
ctataggagacattctcgtttaaaccaccatgccaatccccacagaagac
atctttctaccacagttaacctaatctagaaaagctcactggcttgtctc
ccaagtgactctgattcctgtcatgttggcagccaaaactaaccattgca
gaaggctatgctaccattaatctcatgatccaagagcttactgagctctc
tctgctcacatccaactggttacatggtgtcatgggacgtcaagagaaac
taaagaattacatactttttctggattaagattttgagagccactatatg
ctagaaaagtaaagtggattctgaggggaagtagtggtctctacagcccc
tgatggtctggaagagcctgatgacaagtaggtttgtcagaggctcatca
gaaataaaggtgagtgggtagatggaggaatggaaggagagaa
gaattcagagagttgatgacacctggcaggaaaccaatgacgtggcgcca
caggaaggaataggctacagaaagacttaggatagagactaaatctttct
gcctacgtagaagacaaagagccagagaataactactgtgcttgccggcc
caaccagggcagtgatgaggatcagtctgtccaggacccagttctttatg
acaaaggttggagggagaaggaggaggagattacctttagtcattgctgt
gacttctgttcttctccttagtagttggatctggactcagcaatcctctg
cttatgcctgggaacctaaaaagacccgagcatctgctgcagaatatcta
agtttcagtatttccctgtattacggacacctctgtcttcatgtttaaga
ggagggaaacagggtggagagatcgctcagcgattaagaggactgtagct
cttctagaggtcctgagttcaaatcccagcaaacacatggtggctcgaga
ccacctacaaggggatctgatgccctcttctggcacacgggtgtatatgc
agatagagaatgtatgcatgtacaataaataaatcttaaaaaaaaatagt
ttcatactctgaaaaaaaagaggagggaagcaggactgtggagtctaaga
agtttatcaagactggggattcttggaacattcatgaaaaccaagcattc
tttttcccaacagcccgagcttgctgtccaaaacctcaggtcctccgaat
gacatggaaatatactaagattcaaataccgatgcttaatgggacagagc
cagggacacgctcaggctctgggattgtaacatccccctgactgaaacag
ttccatccaagaaagaagattttgctttaaggctgtgaggagactgtgac
ctcttgctaggaggaagggaagaagaactggatccagaaatggataacca
cagcaggagcgggacagagaactttgtatctctagtgctagcttgatggg
tagctcagttggtttcagtctttgtcagtgaataaataatcatgggtgag
ggacggtggtgtgctcgatatttggtaagggggaatgaagatggactaag
ctacagcagcaccctccgactcagtgcgatgactagtcagcaggcctctt
tcttgtatggaacggctggcatatcaaggtcttatgaccgaatacctgct
gggtgactcagaaaatggctctgaaaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_54460999_54461541
seq2: B6Ng01-321J12.b_297_839 (reverse)

seq1  TTCTCTCCTTCCATTCCTCCATCTACCCACTCACCTTTATTTCTGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTTCCATTCCTCCATCTACCCACTCACCTTTATTTCTGATGAG  50

seq1  CCTCTGACAAACCTACTTGTCATCAGGCTCTTCCAGACCATCAGGGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACAAACCTACTTGTCATCAGGCTCTTCCAGACCATCAGGGGCTG  100

seq1  TAGAGACCACTACTTCCCCTCAGAATCCACTTTACTTTTCTAGCATATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCACTACTTCCCCTCAGAATCCACTTTACTTTTCTAGCATATAG  150

seq1  TGGCTCTCAAAATCTTAATCCAGAAAAAGTATGTAATTCTTTAGTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCAAAATCTTAATCCAGAAAAAGTATGTAATTCTTTAGTTTCTC  200

seq1  TTGACGTCCCATGACACCATGTAACCAGTTGGATGTGAGCAGAGAGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGTCCCATGACACCATGTAACCAGTTGGATGTGAGCAGAGAGAGCT  250

seq1  CAGTAAGCTCTTGGATCATGAGATTAATGGTAGCATAGCCTTCTGCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCTCTTGGATCATGAGATTAATGGTAGCATAGCCTTCTGCAATG  300

seq1  GTTAGTTTTGGCTGCCAACATGACAGGAATCAGAGTCACTTGGGAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTTGGCTGCCAACATGACAGGAATCAGAGTCACTTGGGAGACAA  350

seq1  GCCAGTGAGCTTTTCTAGATTAGGTTAACTGTGGTAGAAAGATGTCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGAGCTTTTCTAGATTAGGTTAACTGTGGTAGAAAGATGTCTTCT  400

seq1  GTGGGGATTGGCATGGTGGTTTAAACGAGAATGTCTCCTATAGGCTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGATTGGCATGGTGGTTTAAACGAGAATGTCTCCTATAGGCTCCTG  450

seq1  TATTTGAACACTTGGTCCATGCTTGGTGGCATTGTTTAAGAAGGCATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAACACTTGGTCCATGCTTGGTGGCATTGTTTAAGAAGGCATAGG  500

seq1  GGGTGTGGCCTTGGTGGGGAAGTGCATCACTGTGGGTGGGATT  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGCCTTGGTGGGGAAGTGCATCACTGTGGGTGGGATT  543

seq1: chr7_54419242_54420501
seq2: B6Ng01-321J12.g_67_1296

seq1  GAATTCAGAGAGTTGATGACACCTGGCAGGAAACCAATGACGTGGCGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGTTGATGACACCTGGCAGGAAACCAATGACGTGGCGCCA  50

seq1  CAGGAAGGAATAGGCTACAGAAAGACTTAGGATAGAGACTAAATCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGAATAGGCTACAGAAAGACTTAGGATAGAGACTAAATCTTTCT  100

seq1  GCCTACGTAGAAGACAAAGAGCCAGAGAATAACTACTGTGCTTGCCGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACGTAGAAGACAAAGAGCCAGAGAATAACTACTGTGCTTGCCGGCC  150

seq1  CAACCAGGGCAGTGATGAGGATCAGTCTGTCCAGGACCCAGTTCTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGGCAGTGATGAGGATCAGTCTGTCCAGGACCCAGTTCTTTATG  200

seq1  ACAAAGGTTGGAGGGAGAAGGAGGAGGAGATTACCTTTAGTCATTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTTGGAGGGAGAAGGAGGAGGAGATTACCTTTAGTCATTGCTGT  250

seq1  GACTTCTGTTCTTCTCCTTAGTAGTTGGATCTGGACTCAGCAATCCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGTTCTTCTCCTTAGTAGTTGGATCTGGACTCAGCAATCCTCTG  300

seq1  CTTATGCCTGGGAACCTAAAAAGACCCGAGCATCTGCTGCAGAATATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCCTGGGAACCTAAAAAGACCCGAGCATCTGCTGCAGAATATCTA  350

seq1  AGTTTCAGTATTTCCCTGTATTACGGACACCTCTGTCTTCATGTTTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGTATTTCCCTGTATTACGGACACCTCTGTCTTCATGTTTAAGA  400

seq1  GGAGGGAAACAGGGTGGAGAGATCGCTCAGCGATTAAGAGGACTGTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAACAGGGTGGAGAGATCGCTCAGCGATTAAGAGGACTGTAGCT  450

seq1  CTTCTAGAGGTCCTGAGTTCAAATCCCAGCAAACACATGGTGGCTCGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAGGTCCTGAGTTCAAATCCCAGCAAACACATGGTGGCTCGAGA  500

seq1  CCACCTACAAGGGGATCTGATGCCCTCTTCTGGCACACGGGTGTATATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTACAAGGGGATCTGATGCCCTCTTCTGGCACACGGGTGTATATGC  550

seq1  AGATAGAGAATGTATGCATGTACAATAAATAAATCTTAAAAAAAAATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGAATGTATGCATGTACAATAAATAAATCTTAAAAAAAAATAGT  600

seq1  TTCATACTCTGAAAAAAAAGAGGAGGGAAGCAGGACTGTGGAGTCTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTCTGAAAAAAAAGAGGAGGGAAGCAGGACTGTGGAGTCTAAGA  650

seq1  AGTTTATCAAGACTGGGGATTCTTGGAACATTCATGAAAACCAAGCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATCAAGACTGGGGATTCTTGGAACATTCATGAAAACCAAGCATTC  700

seq1  TTTTTCCCAACAGCCCGAGCTTGCTGTCCAAAACCTCAGGTCCTCCGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCAACAGCCCGAGCTTGCTGTCCAAAACCTCAGGTCCTCCGAAT  750

seq1  GACATGGAAATATACTAAGATTCAAATACCGATGCTTAATGGGACAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGAAATATACTAAGATTCAAATACCGATGCTTAATGGGACAGAGC  800

seq1  CAGGGACACGCTCAGGCTCTGGGATTGTAACATCCCCCTGACTGAAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACACGCTCAGGCTCTGGGATTGTAACATCCCCCTGACTGAAACAG  850

seq1  TTCCATCCAAGAAAGAAGATTTTGCTTTAAGGCTGTGAGGAGACTGTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCAAGAAAGAAGATTTTGCTTTAAGGCTGTGAGGAGACTGTGAC  900

seq1  CTCTTGCTAGGAGGAAGGGAAGAAGAACTGGATCCAGAAATGGATAACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTAGGAGGAAGGGAAGAAGAACTGGATCCAGAAATGGATAACCA  950

seq1  CAGCAGGGAGCGGGACAGAGAACTTTGTATCTCTAGTGCTTAGCTTGATG  1000
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGCA-GGAGCGGGACAGAGAACTTTGTATCTCTAGTGC-TAGCTTGATG  998

seq1  GGTAGCTCAGTTGGTTTCAGTCTTTGTTCAGTGAATAAATAAATTCATGG  1050
      |||||||||||||||||||||||||| |||||||||||||||  ||||||
seq2  GGTAGCTCAGTTGGTTTCAGTCTTTG-TCAGTGAATAAATAA--TCATGG  1045

seq1  GTGAGGGACGGTGTGGTGCTCGATAATTTGGGTAAAGGGGGAAATGAAGA  1100
      |||||||||||||  ||||||||||  || |||||  |||| ||||||||
seq2  GTGAGGGACGGTGGTGTGCTCGATA--TTTGGTAA--GGGGGAATGAAGA  1091

seq1  TGGACTAAGCTACCAGCAGCACACTCAGACATCCAGTGCGATGACATTAA  1150
      |||||||||||| ||||||||| ||| |||   ||||||||||||    |
seq2  TGGACTAAGCTA-CAGCAGCACCCTCCGAC--TCAGTGCGATGAC---TA  1135

seq1  GTCCAGCAGCCTTCTTTCTTTGTATGAGACAGGTCTGCACATATTTAGAG  1200
      || |||||| | |||||| |||||||  ||  | |||  |||||  || |
seq2  GT-CAGCAGGCCTCTTTC-TTGTATGGAAC--GGCTG-GCATATCAAG-G  1179

seq1  TTGTTTATGGGCACCCAGATAACTGCT-GTTGA-TCAGAAAAAATGGCTC  1248
      |   |||||   ||| | ||| ||||| | ||| ||||  ||||||||||
seq2  T--CTTATG---ACCGA-ATACCTGCTGGGTGACTCAG--AAAATGGCTC  1221

seq1  TGAAGTGAGGAG  1260
      ||||   |||||
seq2  TGAA---AGGAG  1230