BAC Information

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BAC

Clone NameB6Ng01-322E17
Chromosome11 (Build37)7 (Build37)
Map Location 101,105,863 - 101,106,971106,410,977 - 106,411,201
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKrt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1
Downstream geneRamp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322E17.bB6Ng01-322E17.g
ACCGA111170GA111171
length1,123402
definitionB6Ng01-322E17.b B6Ng01-322E17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,105,863 - 101,106,971)(106,410,977 - 106,411,201)
sequence
gaattcaaggtcttccttggctctgttgaggcaagttggagctttaggag
atattgatgcggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa
ggaaggaaggaaggcaagcaagcccagggagttagtggttaagagcattt
tctgctcttgtacaggaggaagttcagttcccagcattcatatcaggtgg
ctcacactcccctgcaacttcagctccaaaggacccccgtactctactct
ggcttcttcaggcacctgcacacacacatacatatatgtgcacccacaca
aggtgacatacattaaaaagtatttaaaatgtaaagagtaaaagggcaat
tctctgaagaattcttccattcttggtccccagtttgaagtggctctgag
gctacctggttctctgcacctctgatccttaccaacagaactttgaggtg
ttcaaagggctacccctaccccttatagctgcctataattaattccagct
gcctgtggccagctggaagtcttgcaatgctttttttttttttttttttt
tttttaagggaggaccataaaagataactttggtggacaggaatcagtaa
actgggacaacagcaacagctgaattcaagggtcaatgtctgggagtaat
tgggaaagttttgcgctgacagctgtgtgcctggagttgaaaagtgcggc
caaacaagcccctgggctaattcaggctaatggctggctggcccaatata
cagcaacagctgagttgtgatagctggcagggtccctgggggcccagact
gagcctttggggcttcccagtaaacgtgaccttactcaagtcactcagga
aggaaaaaaagaaaaccggcttctctcttccacaaagggagatctctcca
aagcaggaggagagcaaggtcctaataatgcatgagaaaaacaacggaca
accgtataagacctccaaggctgtagagcttgggaaaggtagatttggga
acagaacctttccgattcaagtcctggggtcttctccttgaaccttgctg
ccttcctccccctataaaaataagggtgatggggtgataattgcctggct
tgccttgggggctggaaggttcc
ttcatgtcagacagttattcagcctggaaggtttgggttttttttttttt
ttttttttttttttttgcaagttctagaccagaaagcatcaaggtagact
gagtgaagcaaggaaggaagggaggaaggaaggaaggaaggaaggaagga
aggaaggaaggaaggaatggagaaacgaatggttgcgaaccatcatatag
ggatgaggaactgagcctgggttctctgcaagagcagcaagtgctgctat
ccagtgaaccatctcttcagctataacaaatggctctttaagggactgtc
cctccgccgatgttctcataagttttttttttaagatttatttatttatt
tatttatttatttattatatgtaaggacattttacctgtcttcacacact
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101105863_101106971
seq2: B6Ng01-322E17.b_41_1163

seq1  GAATTCAAGGTCTTCCTTGGCTCTGTTGAGGCAAGTTGGAGCTTTAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCTTCCTTGGCTCTGTTGAGGCAAGTTGGAGCTTTAGGAG  50

seq1  ATATTGATGCGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATGCGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  100

seq1  GGAAGGAAGGAAGGCAAGCAAGCCCAGGGAGTTAGTGGTTAAGAGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGCAAGCAAGCCCAGGGAGTTAGTGGTTAAGAGCATTT  150

seq1  TCTGCTCTTGTACAGGAGGAAGTTCAGTTCCCAGCATTCATATCAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTTGTACAGGAGGAAGTTCAGTTCCCAGCATTCATATCAGGTGG  200

seq1  CTCACACTCCCCTGCAACTTCAGCTCCAAAGGACCCCCGTACTCTACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTCCCCTGCAACTTCAGCTCCAAAGGACCCCCGTACTCTACTCT  250

seq1  GGCTTCTTCAGGCACCTGCACACACACATACATATATGTGCACCCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTCAGGCACCTGCACACACACATACATATATGTGCACCCACACA  300

seq1  AGGTGACATACATTAAAAAGTATTTAAAATGTAAAGAGTAAAAGGGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACATACATTAAAAAGTATTTAAAATGTAAAGAGTAAAAGGGCAAT  350

seq1  TCTCTGAAGAATTCTTCCATTCTTGGTCCCCAGTTTGAAGTGGCTCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAGAATTCTTCCATTCTTGGTCCCCAGTTTGAAGTGGCTCTGAG  400

seq1  GCTACCTGGTTCTCTGCACCTCTGATCCTTACCAACAGAACTTTGAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTGGTTCTCTGCACCTCTGATCCTTACCAACAGAACTTTGAGGTG  450

seq1  TTCAAAGGGCTACCCCTACCCCTTATAGCTGCCTATAATTAATTCCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGGCTACCCCTACCCCTTATAGCTGCCTATAATTAATTCCAGCT  500

seq1  GCCTGTGGCCAGCTGGAAGTCTTGCAATGCTTTTTTTTTTTTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGCCAGCTGGAAGTCTTGCAATGCTTTTTTTTTTTTTTTTTTTT  550

seq1  TTTTTAAGGGAGGACCATAAAAGATAACTTTGGTGGACAGGAATCAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGGGAGGACCATAAAAGATAACTTTGGTGGACAGGAATCAGTAA  600

seq1  ACTGGGACAACAGCAACAGCTGAGTTCAAGGGTCAATGTCTGGGAGTAAT  650
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTGGGACAACAGCAACAGCTGAATTCAAGGGTCAATGTCTGGGAGTAAT  650

seq1  TGGGAAAGTTTTGCGCTGACAGCTGTGTGCCTGGAGTTGAAAAGTGCGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGTTTTGCGCTGACAGCTGTGTGCCTGGAGTTGAAAAGTGCGGC  700

seq1  CAAACAAGCCCCTGGGCTAATTCAGGCTAATGGCTGGCTGGCCCAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGCCCCTGGGCTAATTCAGGCTAATGGCTGGCTGGCCCAATATA  750

seq1  CAGCAACAGCTGAGTTGTGATAGCTGGCAGGGTCCCTGGGGGCCCAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAGCTGAGTTGTGATAGCTGGCAGGGTCCCTGGGGGCCCAGACT  800

seq1  GAGCCTTTGGGGCTTCCCAGTAAAACGTGACCTTAGCCAAGTCACTCAGG  850
      ||||||||||||||||||||| |||||||||||||  |||||||||||||
seq2  GAGCCTTTGGGGCTTCCCAGT-AAACGTGACCTTACTCAAGTCACTCAGG  849

seq1  AAAGGAAAAAAAGAAAACCGGCTTCTCT-TTCCACAAA-GGAGATTCCTC  898
       ||||||||||||||||||||||||||| ||||||||| ||||||  |||
seq2  -AAGGAAAAAAAGAAAACCGGCTTCTCTCTTCCACAAAGGGAGATCTCTC  898

seq1  CAGAGCAGGAGGAGAGCAAGGTCCTAATAGTGCATGAG-AAAACAACGGA  947
      || |||||||||||||||||||||||||| |||||||| |||||||||||
seq2  CAAAGCAGGAGGAGAGCAAGGTCCTAATAATGCATGAGAAAAACAACGGA  948

seq1  CAACCGTATAAGA-CTCCAAGGCTGTAGAGC-TGGGGAAGGTAGATTTGG  995
      ||||||||||||| ||||||||||||||||| |||| |||||||||||||
seq2  CAACCGTATAAGACCTCCAAGGCTGTAGAGCTTGGGAAAGGTAGATTTGG  998

seq1  GAACAGAACTTTTCAG-TTCAAGTCCTGGGGTC-TCTCCTTGAGCTTTAG  1043
      ||||||||| |||| | |||||||||||||||| ||||||||| | || |
seq2  GAACAGAACCTTTCCGATTCAAGTCCTGGGGTCTTCTCCTTGAACCTT-G  1047

seq1  CTGCC-TCCT-CCTCTAT-AAAATA--GGTGAT--GGTGATAATATGCTT  1086
      ||||| |||| || |||| ||||||  ||||||  |||||||||   || 
seq2  CTGCCTTCCTCCCCCTATAAAAATAAGGGTGATGGGGTGATAATTGCCTG  1097

seq1  GCTTGCCTT-GGGGCTG--AGGTTCC  1109
      ||||||||| |||||||  |||||||
seq2  GCTTGCCTTGGGGGCTGGAAGGTTCC  1123

seq1: chr7_106410977_106411201
seq2: B6Ng01-322E17.g_248_472 (reverse)

seq1  GGAGTGTCTGAAGACAGCTACAATGTACTTACATATAATAAATAAATAAA  50
      ||||||| ||||||||| || ||||| |||||||||||||||||||||||
seq2  GGAGTGTGTGAAGACAGGTAAAATGTCCTTACATATAATAAATAAATAAA  50

seq1  TAAATAAATAAATAAATCTTAAAAAAAAAACTTATGAGAACATCGGCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATCTTAAAAAAAAAACTTATGAGAACATCGGCGGA  100

seq1  GGGACAGTCCCTTAAAGAGCCATTTGTTATAGCTGAAGAGATGGTTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTCCCTTAAAGAGCCATTTGTTATAGCTGAAGAGATGGTTCACT  150

seq1  GGATAGCAGCACTTGCTGCTCTTGCAGAGAACCCAGGCTCAGTTCCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCAGCACTTGCTGCTCTTGCAGAGAACCCAGGCTCAGTTCCTCAT  200

seq1  CCCTATATGATGGTTCGCAACCATT  225
      |||||||||||||||||||||||||
seq2  CCCTATATGATGGTTCGCAACCATT  225