BAC Information

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BAC

Clone NameB6Ng01-323A11
Chromosome7 (Build37)
Map Location 25,860,659 - 26,020,367
singlet/doubletdoublet
Overlap geneZfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik
Upstream geneZfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5
Downstream geneErf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323A11.bB6Ng01-323A11.g
ACCGA111714GA111715
length1,127141
definitionB6Ng01-323A11.b B6Ng01-323A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,860,659 - 25,861,776)(26,020,227 - 26,020,367)
sequence
gaattccaggacagccagagctatacagagaaaccctgtctcgaagaact
aaaaaaaaccaaaacaacaacaacaacaacaaaaaaaactaaacctgaga
cagagtggagttgttttgcccaaagtcacagctaagaagtaccagggcca
ggataagcagcctagttagaacatgtaggtatacttgctagggagtccag
taagaagacatccagctagacatccaaaggagggcacacacatggtgaca
actggagactcagacctacctgtggttctgtgttcaaacccctcctagtt
tttctgagcttcagttggggaaacgggggacagtttgaccaaccagatgc
acctctgataactcccttaaccttggcttcaagagggagcttcctgaaaa
ctgtggtgtacttgtgtggagtccaaatatggatactggatctcttcagt
cactcgctaccatattacattcaggtgtgtgtgtgtatgttcatgtatgc
acactctggtatatgcagaagtcagagaacaacttacaagagtcagttct
ctcctttcaccctgtggatcccagaatcaaaactccagatcaggcttagc
atgtggctttacgcgctgaaccatctccctggctggcctggaacttcatg
ttttcccaggaaattcttcccatgcctaggggtccttaactgtaactgtg
tggaagggcagtcacctggaaagatacctttaatgctcaaaacaggagag
gccgagtcaggcggatctctgtgaggccagcctgttcacaaagccagacc
atgcctcaaacaaaaacaagaacaactgactcgatccactacaaatccca
taaacttccttcttcaggtcttccaccccacaccctcagcttcttccaag
ggaccttactaacggggcttttcctttctccttccatttctcacttcctg
tcacgtacctcttcctctaaactccctctcctgacatcttgtttccattc
tactcttcctcgatttccccgttcatcctcttaataaggaaaaaaaaggt
ctaaggccttggttttggttcctttttggcctggtggtgactgctgcctg
cctgattccctctccccaatcacgccg
agagactgaactcaggacttgaagctcgcatggcaagcacatttatatac
catagcagctcaccagcttgagcctgggatttcattggaacttaagcatg
ggcccaaggagaggggggaggaagagaatgattgggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25860659_25861776
seq2: B6Ng01-323A11.b_50_1176

seq1  GAATTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAGAACT  50

seq1  AAAAAAAACCAAAACAACAACAACAACAACAAAAAAAACTAAACCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCAAAACAACAACAACAACAACAAAAAAAACTAAACCTGAGA  100

seq1  CAGAGTGGAGTTGTTTTGCCCAAAGTCACAGCTAAGAAGTACCAGGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGAGTTGTTTTGCCCAAAGTCACAGCTAAGAAGTACCAGGGCCA  150

seq1  GGATAAGCAGCCTAGTTAGAACATGTAGGTATACTTGCTAGGGAGTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGCAGCCTAGTTAGAACATGTAGGTATACTTGCTAGGGAGTCCAG  200

seq1  TAAGAAGACATCCAGCTAGACATCCAAAGGAGGGCACACACATGGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGACATCCAGCTAGACATCCAAAGGAGGGCACACACATGGTGACA  250

seq1  ACTGGAGACTCAGACCTACCTGTGGTTCTGTGTTCAAACCCCTCCTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGACTCAGACCTACCTGTGGTTCTGTGTTCAAACCCCTCCTAGTT  300

seq1  TTTCTGAGCTTCAGTTGGGGAAACGGGGGACAGTTTGACCAACCAGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCTTCAGTTGGGGAAACGGGGGACAGTTTGACCAACCAGATGC  350

seq1  ACCTCTGATAACTCCCTTAACCTTGGCTTCAAGAGGGAGCTTCCTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGATAACTCCCTTAACCTTGGCTTCAAGAGGGAGCTTCCTGAAAA  400

seq1  CTGTGGTGTACTTGTGTGGAGTCCAAATATGGATACTGGATCTCTTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGTACTTGTGTGGAGTCCAAATATGGATACTGGATCTCTTCAGT  450

seq1  CACTCGCTACCATATTACATTCAGGTGTGTGTGTGTATGTTCATGTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCTACCATATTACATTCAGGTGTGTGTGTGTATGTTCATGTATGC  500

seq1  ACACTCTGGTATATGCAGAAGTCAGAGAACAACTTACAAGAGTCAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGGTATATGCAGAAGTCAGAGAACAACTTACAAGAGTCAGTTCT  550

seq1  CTCCTTTCACCCTGTGGATCCCAGAATCAAAACTCCAGATCAGGCTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCACCCTGTGGATCCCAGAATCAAAACTCCAGATCAGGCTTAGC  600

seq1  ATGTGGCTTTACGCGCTGAACCATCTCCCTGGCTGGCCTGGAACTTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTTTACGCGCTGAACCATCTCCCTGGCTGGCCTGGAACTTCATG  650

seq1  TTTTCCCAGGAAATTCTTCCCATGCCTAGGGGTCCTTAACTGTAACTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAGGAAATTCTTCCCATGCCTAGGGGTCCTTAACTGTAACTGTG  700

seq1  TGGAAGGGCAGTCACCTGGAAAGATACCTTTAATGCTCAAAACAGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGCAGTCACCTGGAAAGATACCTTTAATGCTCAAAACAGGAGAG  750

seq1  GCCGAGTCAGGCGGATCTCTGTGAGGCCAGCCTGTTCACAAAGCCAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGTCAGGCGGATCTCTGTGAGGCCAGCCTGTTCACAAAGCCAGACC  800

seq1  ATGCCTCAAACAAAAACAAGAACAACTGACTCGATCCACTACAAATCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCAAACAAAAACAAGAACAACTGACTCGATCCACTACAAATCCCA  850

seq1  TAAACTTCCTTCTTCAGGTCTTCCACCCCACACCCTCAGCTTCTTCCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCCTTCTTCAGGTCTTCCACCCCACACCCTCAGCTTCTTCCAAG  900

seq1  GGACCTTACTAACGGGGCTTTTCCTTTCTCCTTCCATTTCTCACTTCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTACTAACGGGGCTTTTCCTTTCTCCTTCCATTTCTCACTTCCTG  950

seq1  TCACGTACCTCTTCCTCTAAACTCCCTCTCCTGACATCTTGTTTCCATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTACCTCTTCCTCTAAACTCCCTCTCCTGACATCTTGTTTCCATTC  1000

seq1  TACTCTTCCTCGATTTCCCCGTTCATCCTCTTAAT-AGGAAAAAAAA-GT  1048
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  TACTCTTCCTCGATTTCCCCGTTCATCCTCTTAATAAGGAAAAAAAAGGT  1050

seq1  CTTAAGCCTTG--TTTTGTTCC-TTTTGCCCTG--TGTGACTGCTG-CTG  1092
      || | ||||||  ||| ||||| ||||| ||||   |||||||||| |||
seq2  CTAAGGCCTTGGTTTTGGTTCCTTTTTGGCCTGGTGGTGACTGCTGCCTG  1100

seq1  CTTGGTTTCCTCT-CCCATTCACGCCG  1118
      | || || ||||| |||| ||||||||
seq2  CCTGATTCCCTCTCCCCAATCACGCCG  1127

seq1: chr7_26020227_26020367
seq2: B6Ng01-323A11.g_73_213 (reverse)

seq1  CCCCTCCCAATCATTCTCTTCCTCCCCCCTCTCCTTGGGCCCATGCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCAATCATTCTCTTCCTCCCCCCTCTCCTTGGGCCCATGCTTAA  50

seq1  GTTCCAATGAAATCCCAGGCTCAAGCTGGTGAGCTGCTATGGTATATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAATGAAATCCCAGGCTCAAGCTGGTGAGCTGCTATGGTATATAAA  100

seq1  TGTGCTTGCCATGCGAGCTTCAAGTCCTGAGTTCAGTCTCT  141
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGCCATGCGAGCTTCAAGTCCTGAGTTCAGTCTCT  141