BAC Information

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BAC

Clone NameB6Ng01-323A18
Chromosome7 (Build37)8 (Build37)
Map Location 10,603,266 - 10,603,80241,829,625 - 41,829,965
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605
Downstream geneEG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323A18.bB6Ng01-323A18.g
ACCGA111728GA111729
length531897
definitionB6Ng01-323A18.b B6Ng01-323A18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,603,266 - 10,603,802)(41,829,625 - 41,829,965)
sequence
aaactcttctcagttatacacatcagacaggagatcatcacgaataactt
ttctattgtgcatcaccatgctaagagaaatttggggatgcataacggaa
ttcagctcagaaaatgactttggtgtggcactgagaatgcacttcacttc
agaaggaaagactctagcagcagcttcctggggaaagggaacactggagt
atatgtacctgtgatctagtctgcagggagtcctgttaactccataacac
tgcttctccactgtccatctctgcaactgcccagtatccatgaagaagct
gtctgaagtacgttaaccagaacccactgtgtgcagaaaggcaggaaatg
ttgcaggaggtgttagtgcatacatataatcctagtggatatctgagttt
gtggctagcttggtctaccatctagtgcagccaaagctacaaagagaaac
tctgacttaaagaaaagaaagaaagaaagaaagaagatgaggagagagag
agggagaaggagaggaagagagagagagagc
gaattcccaggatcttcagcaccagatgtgtctgtgatatgatatggagt
ctcgccagcaaggacacacacacaggacacacactggtgcttctgcagca
tagctttttttttttttttttttttttaaagatttatttatttattatat
gtaagtacactgtagctgtcttcagatacaccagaagagggcaccagatc
tcattacgggtggttgtgagccaccatgtggttgctgggatctgaacttc
agaccttcggaagagcagtcgggtgcccttacccactgagccatctcacc
agccccgcagcatagctttaatgcatctcgagaaaaagatcattggcttc
tgggggaggaggcttagaacacaagaaacttggtccttaaataggtaggc
cataagcggggttggagacgtatttcaccctgactggctgctcactatca
gcccagatgagccacgggacaggcagggcacaaggaatggaaaaataccc
agcacatacacagactatttgtttaccagttagaacaccagatatcagcg
ccatcttgtaatggcgattgcaagggcagctcctcacaggtagtacaatc
actttggaaaaatacatcgtggtttgtcagacaattatgagtagttctat
ctcaacacccagttatgccattcctgggcatatacccaaaatttgctatt
ttaccccacacttacacctgctcaactatattcctagcagttttgtactt
aataaccaaaagcttggaacaacacagatgtcattcacctgaagaatgga
tgaagaaaaatgttctttttacacaatgaaatacttattaagttattaaa
tataagacatcaagaattttgccaggcaaattgagggaactgataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10603266_10603802
seq2: B6Ng01-323A18.b_45_581

seq1  GAATTCAAACTCTTCTCAGTTATACACATCAGACAGGAGATCATCACGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTCTTCTCAGTTATACACATCAGACAGGAGATCATCACGAA  50

seq1  TAACTTTTCTATTGTGCATCACCATGCTAAGAGAAATTTGGGGATGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTCTATTGTGCATCACCATGCTAAGAGAAATTTGGGGATGCATA  100

seq1  ACGGAATTCAGCTCAGAAAATGACTTTGGTGTGGCACTGAGAATGCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAATTCAGCTCAGAAAATGACTTTGGTGTGGCACTGAGAATGCACTT  150

seq1  CACTTCAGAAGGAAAGACTCTAGCAGCAGCTTCCTGGGGAAAGGGAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGAAGGAAAGACTCTAGCAGCAGCTTCCTGGGGAAAGGGAACAC  200

seq1  TGGAGTATATGTACCTGTGATCTAGTCTGCAGGGAGTCCTGTTAACTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATATGTACCTGTGATCTAGTCTGCAGGGAGTCCTGTTAACTCCA  250

seq1  TAACACTGCTTCTCCACTGTCCATCTCTGCAACTGCCCAGTATCCATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGCTTCTCCACTGTCCATCTCTGCAACTGCCCAGTATCCATGAA  300

seq1  GAAGCTGTCTGAAGTACGTTAACCAGAACCCACTGTGTGCAGAAAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTCTGAAGTACGTTAACCAGAACCCACTGTGTGCAGAAAGGCAG  350

seq1  GAAATGTTGCAGGAGGTGTTAGTGCATACATATAATCCTAGTGGATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTGCAGGAGGTGTTAGTGCATACATATAATCCTAGTGGATATCT  400

seq1  GAGTTTGTGGCTAGCTTGGTCTACCATCTAGTGCAGCCAAAGCTACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTGGCTAGCTTGGTCTACCATCTAGTGCAGCCAAAGCTACAAAG  450

seq1  AGAAACTCTGACTTAAAGAAAAGAAAGAAAGAAAGAAAGAAGATGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCTGACTTAAAGAAAAGAAAGAAAGAAAGAAAGAAGATGAGGAG  500

seq1  AGAGAGAGGGAGAAGGAGAGGAAGAGAGAGAGAGAGC  537
      |||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGGAGAAGGAGAGGAAGAGAGAGAGAGAGC  537

seq1: chr8_41829625_41829965
seq2: B6Ng01-323A18.g_90_618 (reverse)

seq1  ATGGCGCTGATATCCGGCGTTCTAACTGGTAAACAAGTAGTCTGCGTATG  50
      |||||||||||||| || |||||||||||||||||| ||||||| |||||
seq2  ATGGCGCTGATATCTGGTGTTCTAACTGGTAAACAAATAGTCTGTGTATG  50

seq1  TGCTGGGGTATTTTTCCATTCCTTGTGCCCTGCCTGTCCTGTGGCGTCAT  100
      |||| |||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TGCT-GGGTATTTTTCCATTCCTTGTGCCCTGCCTGTCCCGTGGC-TCAT  98

seq1  CTGGGCTGATAGTGAGCATCCAGTCAGGGTGAAATACATCTCCAACACCT  150
      |||||||||||||||||| |||||||||||||||||| |||||||| || 
seq2  CTGGGCTGATAGTGAGCAGCCAGTCAGGGTGAAATACGTCTCCAACCCCG  148

seq1  CTTGTGG----TCTATTTAAGGACCGAGTTTCCTGTGTTCTGGGCCTCCT  196
      ||| |||     ||||||||||||| |||||| ||||||||  |||||||
seq2  CTTATGGCCTACCTATTTAAGGACCAAGTTTCTTGTGTTCTAAGCCTCCT  198

seq1  CCCCCAGAAGCTAATCATCTTTCTCTGGAGATGGATTAAAGCTATGTTGC  246
      ||||||||||| ||| |||||| ||| |||||| |||||||||||| |||
seq2  CCCCCAGAAGCCAATGATCTTTTTCTCGAGATGCATTAAAGCTATGCTGC  248

seq1  ----------AGAAGGATCTGAGTGT------------------------  262
                ||| || || | | ||                        
seq2  GGGGCTGGTGAGATGGCTCAGTGGGTAAGGGCACCCGACTGCTCTTCCGA  298

seq1  --GTGTG------------------------TGTGTGT------------  274
        || ||                         |||  |            
seq2  AGGTCTGAAGTTCAGATCCCAGCAACCACATGGTGGCTCACAACCACCCG  348

seq1  -------------------------GTGTGTGTG-----------TGTGT  288
                               |||| | ||            ||||
seq2  TAATGAGATCTGGTGCCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGT  398

seq1  GTTT----------------------------------------------  292
        ||                                              
seq2  ACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAAAAA  448

seq1  ----------------------GTGTGTGT-GTGTGTGTGTGTC----TT  315
                            ||||||||  ||||||||||||     |
seq2  AAGCTATGCTGCAGAAGCACCAGTGTGTGTCCTGTGTGTGTGTCCTTGCT  498

seq1  CGCGAGACTC-----CATATCACAGACACAT  341
       |||||||||     ||||||||||||||||
seq2  GGCGAGACTCCATATCATATCACAGACACAT  529