BAC Information

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BAC

Clone NameB6Ng01-323B06
Chromosome7 (Build37)
Map Location 19,714,611 - 19,884,621
singlet/doubletdoublet
Overlap geneFbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2
Upstream geneIgfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866
Downstream geneFosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323B06.bB6Ng01-323B06.g
ACCGA111752GA111753
length1,041492
definitionB6Ng01-323B06.b B6Ng01-323B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,714,611 - 19,715,638)(19,884,124 - 19,884,621)
sequence
gaattcctgctgcttattggccacctagtcaagccactaccagaggtggg
ggacaaaccatgtgcagtctgtcatggtggtacactcgactttaatccca
ccactggggaggcagaggctggcagatctatgaattcaaggcaagctcta
ggccagccagggctacatagatgagacctgtctcaaaagaaaaaaacaac
agacatgccaagtgattgaggaagacacttggtgttgccctctggccacc
acacactcatgtgcattcacaggctcttatatactcccatccaagctcat
tcgtatgccatacgtagacaggaaatagagacatgaaaatgaaacacgtc
agttgaggagcatgcgtgggctcccagtgctccgaggcaggatcaagagt
ttgaggccaggctggagtacacactgagaccctagagagagatgtaggga
ttatttttttatgatttatttattatgtgtatatgagtacactatcactg
tcttcagacacaccagaagagggtatcagatggttctgagccaccatgtg
gttgctgggatttgaactcaggacctctggaagagcagtcagtgctctta
acctctgagccacctctcctgccctaggtgagttaatttgaagtgctttg
ctgctaactgctattgtgactaacatgtttacgctgcctgtgagtggatg
tctttccccttcctgtgagctattactggggagcccagtgtcatcagtgc
atgcattcaggaggggcccacagtgtgtgtatctcagggtgcgggaatgt
gcatcctctaattacgaggagcacttgatgagggtgtggagcgtgtagcc
ctgctcctatcagctttccctctcaagcagtctgggatcgctgagttaat
ggttcttcattaaaacttgtggatgacaggtcttggagaaatggcttcgc
catgaagagcattttgcctgcctcttcagaggggccgggagctcgatttt
cccagcgcccacatcagatgccctccatcgtttggttttaa
tcccctcacctgattctttgatgtgaacacaatgtcttgggaaagatgtc
ttagaaagcatctttagaaaacgttattttttaaaaaacaacaacatttt
ttcatgtaggtgcgtgtgcaaggacaacttgcagagttggctccgtcctt
ctaccatgtccattggaggaatcacctttaccctctaggccaccttgcca
ttctccgtgcaggtatgtgacatactgtgattgtgacctatgacctttcc
cttgctaagcaagtgcctcatggagggggcagtggcaatagcagcaacag
tgaactaaattttaaaagtagaactcggctggagatacaaatattgcagt
tttgaagttgggatgggttgtctaataacttaataacataacccagaaga
gaggccccttggtcttgcaaactttatatgcctcagtacaggggaacgcc
agagccaagaagtgggagtgggttggtaggggagcagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19714611_19715638
seq2: B6Ng01-323B06.b_48_1087

seq1  GAATTCCTGCTGCTTATTGGCCACCTAGTCAAGCCACTACCAGAGGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTGCTTATTGGCCACCTAGTCAAGCCACTACCAGAGGTGGG  50

seq1  GGACAAACCATGTGCAGTCTGTCATGGTGGTACACTCGACTTTAATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAACCATGTGCAGTCTGTCATGGTGGTACACTCGACTTTAATCCCA  100

seq1  CCACTGGGGAGGCAGAGGCTGGCAGATCTATGAATTCAAGGCAAGCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGGAGGCAGAGGCTGGCAGATCTATGAATTCAAGGCAAGCTCTA  150

seq1  GGCCAGCCAGGGCTACATAGATGAGACCTGTCTCAAAAGAAAAAAACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCAGGGCTACATAGATGAGACCTGTCTCAAAAGAAAAAAACAAC  200

seq1  AGACATGCCAAGTGATTGAGGAAGACACTTGGTGTTGCCCTCTGGCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCCAAGTGATTGAGGAAGACACTTGGTGTTGCCCTCTGGCCACC  250

seq1  ACACACTCATGTGCATTCACAGGCTCTTATATACTCCCATCCAAGCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCATGTGCATTCACAGGCTCTTATATACTCCCATCCAAGCTCAT  300

seq1  TCGTATGCCATACGTAGACAGGAAATAGAGACATGAAAATGAAACACGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATGCCATACGTAGACAGGAAATAGAGACATGAAAATGAAACACGTC  350

seq1  AGTTGAGGAGCATGCGTGGGCTCCCAGTGCTCCGAGGCAGGATCAAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGGAGCATGCGTGGGCTCCCAGTGCTCCGAGGCAGGATCAAGAGT  400

seq1  TTGAGGCCAGGCTGGAGTACACACTGAGACCCTAGAGAGAGATGTAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGGCTGGAGTACACACTGAGACCCTAGAGAGAGATGTAGGGA  450

seq1  TTATTTTTTTATGATTTATTTATTATGTGTATATGAGTACACTATCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTATGATTTATTTATTATGTGTATATGAGTACACTATCACTG  500

seq1  TCTTCAGACACACCAGAAGAGGGTATCAGATGGTTCTGAGCCACCATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACACACCAGAAGAGGGTATCAGATGGTTCTGAGCCACCATGTG  550

seq1  GTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTA  600

seq1  ACCTCTGAGCCACCTCTCCTGCCCTAGGTGAGTTAATTTGAAGTGCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGCCACCTCTCCTGCCCTAGGTGAGTTAATTTGAAGTGCTTTG  650

seq1  CTGCTAACTGCTATTGTGACTAACATGTTTACGCTGCCTGTGAGTGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAACTGCTATTGTGACTAACATGTTTACGCTGCCTGTGAGTGGATG  700

seq1  TCTTTCCCCTTCCTGTGAGCTATTACTGGGGAGCCCAGTGTCATCAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCCTTCCTGTGAGCTATTACTGGGGAGCCCAGTGTCATCAGTGC  750

seq1  ATGCATTCAGGAGGGGCCCACAGTGTGTGTATCTCAGGGTGCGGGAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCAGGAGGGGCCCACAGTGTGTGTATCTCAGGGTGCGGGAATGT  800

seq1  GCATCCTCTAATTACGAGGAGCACTTGATGAGGGTGTGGAGCGTGTAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTCTAATTACGAGGAGCACTTGATGAGGGTGTGGAGCGTGTAGCC  850

seq1  CTGCTCCTATCAGC-TTCCCTCTCAAGCAGTCTGGGATCGCTGAGTTAAT  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTATCAGCTTTCCCTCTCAAGCAGTCTGGGATCGCTGAGTTAAT  900

seq1  GGTTC-TCATTAAAAC-TGTGGATGACAGGTC-TGGAGAAATGGCTTCGC  946
      ||||| |||||||||| ||||||||||||||| |||||||||||||||||
seq2  GGTTCTTCATTAAAACTTGTGGATGACAGGTCTTGGAGAAATGGCTTCGC  950

seq1  AGTGAAGAGCATTT--GCTGCTCTTTCAGAGGG--CCGGAGCCGG--TTT  990
        ||||||||||||   ||||   |||||||||  | |||||  |  |||
seq2  CATGAAGAGCATTTTGCCTGCCTCTTCAGAGGGGCCGGGAGCTCGATTTT  1000

seq1  CCCAGCG-CCACATCAGGTGCCCT-CATCGTTTGTTTTTA  1028
      ||||||| ||||||||| |||||| ||||||||| |||||
seq2  CCCAGCGCCCACATCAGATGCCCTCCATCGTTTGGTTTTA  1040

seq1: chr7_19884124_19884621
seq2: B6Ng01-323B06.g_67_564 (reverse)

seq1  CCCCCCTGCTCCCCTACCAACCCACTCCCACTTCTTGGCTCTGGCGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTGCTCCCCTACCAACCCACTCCCACTTCTTGGCTCTGGCGTTCC  50

seq1  CCTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCTGG  100

seq1  GTTATGTTATTAAGTTATTAGACAACCCATCCCAACTTCAAAACTGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTATTAAGTTATTAGACAACCCATCCCAACTTCAAAACTGCAAT  150

seq1  ATTTGTATCTCCAGCCGAGTTCTACTTTTAAAATTTAGTTCACTGTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATCTCCAGCCGAGTTCTACTTTTAAAATTTAGTTCACTGTTGCT  200

seq1  GCTATTGCCACTGCCCCCTCCATGAGGCACTTGCTTAGCAAGGGAAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGCCACTGCCCCCTCCATGAGGCACTTGCTTAGCAAGGGAAAGGT  250

seq1  CATAGGTCACAATCACAGTATGTCACATACCTGCACGGAGAATGGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTCACAATCACAGTATGTCACATACCTGCACGGAGAATGGCAAGG  300

seq1  TGGCCTAGAGGGTAAAGGTGATTCCTCCAATGGACATGGTAGAAGGACGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAGAGGGTAAAGGTGATTCCTCCAATGGACATGGTAGAAGGACGG  350

seq1  AGCCAACTCTGCAAGTTGTCCTTGCACACGCACCTACATGAAAAAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTCTGCAAGTTGTCCTTGCACACGCACCTACATGAAAAAATGTT  400

seq1  GTTGTTTTTTAAAAAATAACGTTTTCTAAAGATGCTTTCTAAGACATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTTTAAAAAATAACGTTTTCTAAAGATGCTTTCTAAGACATCTT  450

seq1  TCCCAAGACATTGTGTTCACATCAAAGAATCAGGTGAGGGGAGAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGACATTGTGTTCACATCAAAGAATCAGGTGAGGGGAGAATTC  498