BAC Information

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BAC

Clone NameB6Ng01-323O09
Chromosome7 (Build37)
Map Location 126,398,470 - 126,589,330
singlet/doubletdoublet
Overlap geneLOC100042871, Gp2
Upstream geneLOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139
Downstream geneUmod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323O09.bB6Ng01-323O09.g
ACCGA112353GA112354
length1,1081,126
definitionB6Ng01-323O09.b B6Ng01-323O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,398,470 - 126,399,573)(126,588,230 - 126,589,330)
sequence
gaattcatctcaaaggctcttcttaatgttttgttctaccttgtcttggt
ctgaatggatttattcagttgtgcaaaacaaacaaaatccatcacataaa
tacaagtgtatgtaactggcaaacgttaaaaaagaaaaatgcactaataa
tcttagctgctgatccagcagttgaaagctgttgtgtgttggtcgcttac
tgtgaaacaaggagtctaagaactctgtagtactaatctgatttgccatc
acacactgacccacgaggctctcattaccactcctgccattctgcagatg
aagagacgtgaggtacagagaaataaaggagatttgcataaagtcttgag
gtatattgtctctggagtctactcttaatcagctgcacaccatgtgtttg
taggatcaattagcagacctggtgttttgtgatgaaggtaggtggagatc
caaaagatagaaggatggggaagtcagaaacaattgcaactcacccacag
gcttttcatagtggtcctatacaattacagagttgtggacttgagttcaa
ctggaaagttctacccctgggcttttatcatctgcaaccttttctcttac
atcagtatatctacccctcagtatactttgaaactagaatggctcccaca
ggggtcattttgagagctcatattttgagttcttggtccctagtttgtgg
tggtattttgaaggctatggagggcttcagaaggtgggtccagggtggca
gactaggtcactacaggtgggcctttgaagataatacccaccttaatcct
ggcctaaatctgcttcctgctgatgtcatatgaaaatctccattacaact
catctccatcatagatagcaccatgttttgtccatggctttcctgccatg
atggaatgaaactatgagtggcacaaatccttccaatgagccagtcagta
aaacattcttcctcctctcaccatttggggtttgtgttaagtgacctcac
tccagtttggactttctttctgcatttggatcctttctaaaaacaatgac
tacctttcaggtactttcctttttcattttaatttgtgcatgcatggtga
catgcctg
gaattccttgttactgtctgaaaaatcaacatagtaagttccttaacatc
actgagcctcagtcttgccattggcaagtgagagatggaggtgctttctt
cacaaatccattaggaaaagtagacagaatgtgcttcactgtgtgcctgc
cagacgacagaagccttcacagtgaggattgcttgtgggggtggtgactg
gaacccaggagtattgggagcggctatggccccatgacagcagccatcag
agcatgaccaaggagaccttcacctgctgctcttgcccacaggtgctcag
agttctgctacctcgaaggggactccccacactacaggtatacggtttcc
ttatgcttttcttacagccctgccaagtttctctcctgtcctcccaccct
ctggacatctatgtatccccttcaatgtgtcaggccctgctggggaccag
ggcttggtgaaatgaggctaacccaagagtggttctataatctagaagta
gagccagctgcttaacagcaagtgtttaacaagtgagactgtgtgccagg
cactgctctaggaactgataatatgatgctgatcaagacagcgcaggtgc
cttccctcagagagtttgtgttccaggatgagaaataaataataaaacca
aaacccaaacagtttaattagaaataaaagatggatggtggaatagaagc
tacaggcataagtaataaagtcttaaatttatttacttaagtttatttct
ctagcacgtaagtgaaatcttatgtgtaagagaacccatgattcaacaat
caatcaaagattcaagctccttccagcttgctcttgaggtgagatcatta
ttttaatggtccaatttagcatccagagatcaggacaggggaatgtgaag
gaagacaatgagtgctatgggaacatactggcaactggcaccaaacacct
acatttgtatctcattgtttactatctaactatgtggcacactgggctgc
aaggactttggaaatagaatctcttgttttggatggcatttgccaaaaca
tgttgatggcctgatgatcaaagcagaagagaatcaatggaatcagagac
ctgttaaagaaatattggatcagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_126398470_126399573
seq2: B6Ng01-323O09.b_48_1155

seq1  GAATTCATCTCAAAGGCTCTTCTTAATGTTTTGTTCTACCTTGTCTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAAAGGCTCTTCTTAATGTTTTGTTCTACCTTGTCTTGGT  50

seq1  CTGAATGGATTTATTCAGTTGTGCAAAACAAACAAAATCCATCACATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGATTTATTCAGTTGTGCAAAACAAACAAAATCCATCACATAAA  100

seq1  TACAAGTGTATGTAACTGGCAAACGTTAAAAAAGAAAAATGCACTAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTGTATGTAACTGGCAAACGTTAAAAAAGAAAAATGCACTAATAA  150

seq1  TCTTAGCTGCTGATCCAGCAGTTGAAAGCTGTTGTGTGTTGGTCGCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTGCTGATCCAGCAGTTGAAAGCTGTTGTGTGTTGGTCGCTTAC  200

seq1  TGTGAAACAAGGAGTCTAAGAACTCTGTAGTACTAATCTGATTTGCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACAAGGAGTCTAAGAACTCTGTAGTACTAATCTGATTTGCCATC  250

seq1  ACACACTGACCCACGAGGCTCTCATTACCACTCCTGCCATTCTGCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGACCCACGAGGCTCTCATTACCACTCCTGCCATTCTGCAGATG  300

seq1  AAGAGACGTGAGGTACAGAGAAATAAAGGAGATTTGCATAAAGTCTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACGTGAGGTACAGAGAAATAAAGGAGATTTGCATAAAGTCTTGAG  350

seq1  GTATATTGTCTCTGGAGTCTACTCTTAATCAGCTGCACACCATGTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTGTCTCTGGAGTCTACTCTTAATCAGCTGCACACCATGTGTTTG  400

seq1  TAGGATCAATTAGCAGACCTGGTGTTTTGTGATGAAGGTAGGTGGAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCAATTAGCAGACCTGGTGTTTTGTGATGAAGGTAGGTGGAGATC  450

seq1  CAAAAGATAGAAGGATGGGGAAGTCAGAAACAATTGCAACTCACCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATAGAAGGATGGGGAAGTCAGAAACAATTGCAACTCACCCACAG  500

seq1  GCTTTTCATAGTGGTCCTATACAATTACAGAGTTGTGGACTTGAGTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCATAGTGGTCCTATACAATTACAGAGTTGTGGACTTGAGTTCAA  550

seq1  CTGGAAAGTTCTACCCCTGGGCTTTTATCATCTGCAACCTTTTCTCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGTTCTACCCCTGGGCTTTTATCATCTGCAACCTTTTCTCTTAC  600

seq1  ATCAGTATATCTACCCCTCAGTATACTTTGAAACTAGAATGGCTCCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATATCTACCCCTCAGTATACTTTGAAACTAGAATGGCTCCCACA  650

seq1  GGGGTCATTTTGAGAGCTCATATTTTGAGTTCTTGGTCCCTAGTTTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCATTTTGAGAGCTCATATTTTGAGTTCTTGGTCCCTAGTTTGTGG  700

seq1  TGGTATTTTGAAGGCTATGGAGGGCTTCAGAAGGTGGGTCCAGGGTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTTGAAGGCTATGGAGGGCTTCAGAAGGTGGGTCCAGGGTGGCA  750

seq1  GACTAGGTCACTACAGGTGGGCCTTTGAAGATAATACCCACCTTAATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGTCACTACAGGTGGGCCTTTGAAGATAATACCCACCTTAATCCT  800

seq1  GGCCTAAATCTGCTTCCTGCTGATGTCATATGAAAATCTCCATTACAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAATCTGCTTCCTGCTGATGTCATATGAAAATCTCCATTACAACT  850

seq1  CATCTCCATCATAGATAGCACCATGTTTTGTCCATGGCTTTCCTGCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCATCATAGATAGCACCATGTTTTGTCCATGGCTTTCCTGCCATG  900

seq1  ATGGAATGAAACTATGAGTGGCACAAATCCTTCCAATGAGCCAGTCAGT-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGGAATGAAACTATGAGTGGCACAAATCCTTCCAATGAGCCAGTCAGTA  950

seq1  AAACATTC-TCCT-CTCTCACCATTTGGGGTTTGTGTTAAGTGACTCCAA  997
      |||||||| |||| ||||||||||||||||||||||||||||||| |  |
seq2  AAACATTCTTCCTCCTCTCACCATTTGGGGTTTGTGTTAAGTGAC-CTCA  999

seq1  CTCCAG-TTGGAC-TTCTTTCTGCATTTGGATCCTTTCT-AAGACAATGA  1044
      |||||| |||||| ||||||||||||||||||||||||| || |||||||
seq2  CTCCAGTTTGGACTTTCTTTCTGCATTTGGATCCTTTCTAAAAACAATGA  1049

seq1  CTAACTTTCAGGTAC-TTCCCTTTTCATTTTAAATTTTGTGCATGCATGT  1093
      ||| ||||||||||| |||| ||||||||||||  |||||||||||||| 
seq2  CTACCTTTCAGGTACTTTCCTTTTTCATTTTAA--TTTGTGCATGCATGG  1097

seq1  GTACATGCCTG  1104
        |||||||||
seq2  TGACATGCCTG  1108

seq1: chr7_126588230_126589330
seq2: B6Ng01-323O09.g_69_1194 (reverse)

seq1  ---------------------------CTTCTGA-TCCA-TGA-TCTCTT  20
                                   ||||| |||| ||| ||||||
seq2  CTTCTGATCCAATATTTCTTTAACAGGTCTCTGATTCCATTGATTCTCTT  50

seq1  CCTGCTTTGATCATCAAGCCATCAAACCTTGTTTTGGCATATGGCCATCC  70
       ||||||||||||||| ||||||||  | |||||||||| || |||||||
seq2  -CTGCTTTGATCATCAGGCCATCAA--CATGTTTTGGCAAAT-GCCATCC  96

seq1  AAAAC-AGAGATTCTATTTCCAAGGTTCCTTTGCAGCCAGGTGTGGCCAC  119
      ||||| ||||||||||||||||| ||  | ||||||||  |||| |||||
seq2  AAAACAAGAGATTCTATTTCCAAAGT--CCTTGCAGCCCAGTGT-GCCAC  143

seq1  ATAGTTAGATAGTAAACAATGAGATACAAATGTAGGTGTTTGGTGCCAGT  169
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAGATAGTAAACAATGAGATACAAATGTAGGTGTTTGGTGCCAGT  193

seq1  TGCCAGTATGTT-CCATAGCACTCATTGTCTTCCTTCACATTCCCCTGTC  218
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTATGTTCCCATAGCACTCATTGTCTTCCTTCACATTCCCCTGTC  243

seq1  CTGATCTCTGGATGCTAAATTGGACCATTAAAATAATGATCTCACCTCAA  268
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTCTGGATGCTAAATTGGACCATTAAAATAATGATCTCACCTCAA  293

seq1  GAGCAAGCTGGAAGGAGCTTGAATCTTTGATTGATTGTTGAATCATGGGT  318
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCTGGAAGGAGCTTGAATCTTTGATTGATTGTTGAATCATGGGT  343

seq1  TCTCTTACACATAAGATTTCACTTACGTGCTAGAGAAATAAACTTAAGTA  368
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACACATAAGATTTCACTTACGTGCTAGAGAAATAAACTTAAGTA  393

seq1  AATAAATTTAAGACTTTATTACTTATGCCTGTAGCTTCTATTCCACCATC  418
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTAAGACTTTATTACTTATGCCTGTAGCTTCTATTCCACCATC  443

seq1  CATCTTTTATTTCTAATTAAACTGTTTGGGTTTTGGTTTTATTATTTATT  468
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTATTTCTAATTAAACTGTTTGGGTTTTGGTTTTATTATTTATT  493

seq1  TCTCATCCTGGAACACAAACTCTCTGAGGGAAGGCACCTGCGCTGTCTTG  518
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCTGGAACACAAACTCTCTGAGGGAAGGCACCTGCGCTGTCTTG  543

seq1  ATCAGCATCATATTATCAGTTCCTAGAGCAGTGCCTGGCACACAGTCTCA  568
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATCATATTATCAGTTCCTAGAGCAGTGCCTGGCACACAGTCTCA  593

seq1  CTTGTTAAACACTTGCTGTTAAGCAGCTGGCTCTACTTCTAGATTATAGA  618
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAACACTTGCTGTTAAGCAGCTGGCTCTACTTCTAGATTATAGA  643

seq1  ACCACTCTTGGGTTAGCCTCATTTCACCAAGCCCTGGTCCCCAGCAGGGC  668
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTTGGGTTAGCCTCATTTCACCAAGCCCTGGTCCCCAGCAGGGC  693

seq1  CTGACACATTGAAGGGGATACATAGATGTCCAGAGGGTGGGAGGACAGGA  718
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACATTGAAGGGGATACATAGATGTCCAGAGGGTGGGAGGACAGGA  743

seq1  GAGAAACTTGGCAGGGCTGTAAGAAAAGCATAAGGAAACCGTATACCTGT  768
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTTGGCAGGGCTGTAAGAAAAGCATAAGGAAACCGTATACCTGT  793

seq1  AGTGTGGGGAGTCCCCTTCGAGGTAGCAGAACTCTGAGCACCTGTGGGCA  818
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGGAGTCCCCTTCGAGGTAGCAGAACTCTGAGCACCTGTGGGCA  843

seq1  AGAGCAGCAGGTGAAGGTCTCCTTGGTCATGCTCTGATGGCTGCTGTCAT  868
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCAGGTGAAGGTCTCCTTGGTCATGCTCTGATGGCTGCTGTCAT  893

seq1  GGGGCCATAGCCGCTCCCAATACTCCTGGGTTCCAGTCACCACCCCCACA  918
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCATAGCCGCTCCCAATACTCCTGGGTTCCAGTCACCACCCCCACA  943

seq1  AGCAATCCTCACTGTGAAGGCTTCTGTCGTCTGGCAGGCACACAGTGAAG  968
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCCTCACTGTGAAGGCTTCTGTCGTCTGGCAGGCACACAGTGAAG  993

seq1  CACATTCTGTCTACTTTTCCTAATGGATTTGTGAAGAAAGCACCTCCATC  1018
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTGTCTACTTTTCCTAATGGATTTGTGAAGAAAGCACCTCCATC  1043

seq1  TCTCACTTGCCAATGGCAAGACTGAGGCTCAGTGATGTTAAGGAACTTAC  1068
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTGCCAATGGCAAGACTGAGGCTCAGTGATGTTAAGGAACTTAC  1093

seq1  TATGTTGATTTTTCAGACAGTAACAAGGAATTC  1101
      |||||||||||||||||||||||||||||||||
seq2  TATGTTGATTTTTCAGACAGTAACAAGGAATTC  1126