BAC Information

Click to search

BAC

Clone NameB6Ng01-324D14
Chromosome7 (Build37)
Map Location 60,271,930 - 60,373,176
singlet/doubletdoublet
Overlap geneGm1865
Upstream geneEG668783, EG620782, LOC100040692
Downstream geneLOC100040718, LOC668789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324D14.bB6Ng01-324D14.g
ACCGA112594GA112595
length9391,160
definitionB6Ng01-324D14.b B6Ng01-324D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,372,251 - 60,373,176)(60,271,930 - 60,273,108)
sequence
gaattccaggtactttctggatgaattcttatagggaaaaagaaagttga
acttgtaggtttgctaaggactatgtaacatctcttagaaaaaggattga
ggtttgggctacccaaatcaggcagaaaagaggaagcattgccagaaaag
ggaatctgttttgcactgagcacagaagagctatgcacacatggcagact
acaaccttactagcaaggtacaacaggggtgtataaacaaagaggtgtgg
atgctggtagacaggtgtaagtgacaattccttcctgtagatgttacctg
atttctttcctcaagagctatttctgagaagacaacaagacaattagatc
atattaaatcaccttaggaaggtacagttgagctttataggtaccagaat
tcactgaaacataacaacccatcaatgacatcaaaagtcaccaaaattaa
agacaaattttcctactctctaaagttaaacaatttcaaattccatagtt
cttatttgattgagatgaaagttttatgttttaaaaagataaaatcttgc
agatctcttctctctctctctctctctctctctctctctctctctctctc
tccctctccctctctcttgtgtctctcaatgcaacatatttaaatttgac
ttattattattatttttaatgtgattacacactgcaagaaatacaggctt
tctacaatttcccttttggcaggctagacccaggtttctccttttcgcag
gcttcatggaacagttccattttgaaaaaaaaaaaaaaagtataattaac
tgcaccaaccagaaaaggctttgcttaataggtctccatgaaaatttaaa
tcccaataaaaaagagaattacaccaagtttcttccttgattctattctc
actggtgctggtatacctaaagatgttacagatggagaa

gaattcaatatcatgatagaaatgactcaaatacaaagtttcttaaaatc
agattcatgtgttttatagagttagagtttagttttgtttattgtttttg
atttttgtataaatggaatacccttacatttgtacaaaatgttttaacgt
aattcctgtatctgtttatgatcaaaacagactataattctgctcccaat
gctgttaacagtcagctgtgccatatactaaataataaaaactaatacaa
tgcagccgtagcaggcttcatgttgctactaaccttaatggtcaaacatg
cttatggttctgatatcatagcccagtggcactatagccatcttggataa
aatacaatactctatgatatccttacaaagatgaaattgcttgtaataca
gatctctgcgaatgtccccatcacttaatgttccatagctttttccatct
caaacagcaggagaaactctagaagaagacaaagcagaaaatgaaagcag
agggtttcatcttgaagcagatatttggaatgtctcaactaaggatccgg
taaactcactgaatatgagcaagcagtcaactaagtagctatgaaataat
cccctggacaaattaaatgctcaacgaaaaagccctgaagcagtaatctt
agtcctgtatgacaaagtcaacccggacagagagacggcagcttggatat
tttaatagtgatactgacatctgtgagaaaggaacagaaaggccttgggg
tgtttctttcaaggagtagtgtgctgtcacatttgaggaaaattactctg
taactatgtgagaaacaatgtggatatttactcaggtgagataaaatgat
aattttatcaagaagcaggaaccaatagacatgacaaaggtagttgcagt
gcaacagattttaggacaggtggcagaattccatcagaagcagttttatg
tctgagtaaaggaaaggcagaagaatgaccccaaagtgacccgagcagtg
agaaacagagcctcacaataactcaggaatcacagagaaagaatcaagtg
accacccactcagtgtttatttgagaaactgtagctgtctgagatcataa
tcagtgcataatggagtgcaggactgtagtaactgggagattcatgccct
attatcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_60372251_60373176
seq2: B6Ng01-324D14.b_48_986 (reverse)

seq1  TTCT-CATCTGTTACATCTTTAGGTATACCAGCA-CAGTGAGAATAG-AT  47
      |||| ||||||| ||||||||||||||||||||| |||||||||||| ||
seq2  TTCTCCATCTGTAACATCTTTAGGTATACCAGCACCAGTGAGAATAGAAT  50

seq1  C-AGGAAG-AACTTGGTGTAATTCTCTTTTTTATT-GGATTTAATTTTTC  94
      | |||||| |||||||||||||||||||||||||| |||||||| |||||
seq2  CAAGGAAGAAACTTGGTGTAATTCTCTTTTTTATTGGGATTTAAATTTTC  100

seq1  ATGAAGACCTATTAAGC-AAGCCTTTTCT-GTTTGTGCTGTT-ATTATAC  141
      ||| ||||||||||||| ||||||||||| ||| |||| ||| |||||||
seq2  ATGGAGACCTATTAAGCAAAGCCTTTTCTGGTTGGTGCAGTTAATTATAC  150

seq1  TTTTTTTTTTTTTT--CAAATGGAACTGTTCCATGAAGCCTGCG-AAAGG  188
      ||||||||||||||   ||||||||||||||||||||||||||| |||||
seq2  TTTTTTTTTTTTTTTCAAAATGGAACTGTTCCATGAAGCCTGCGAAAAGG  200

seq1  AGAAACCTGGGTCTAGCCTGCCAAAA-GGAAATTGTAGAAAGCCTGTATT  237
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAAACCTGGGTCTAGCCTGCCAAAAGGGAAATTGTAGAAAGCCTGTATT  250

seq1  TCTTGCAGTGTGTAATCACATTAAAAATAATAATAATAAGTCAAATTTAA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGTGTGTAATCACATTAAAAATAATAATAATAAGTCAAATTTAA  300

seq1  ATATGTTGCATTGAGAGACACAAGAGAGAGGGAGAGGGAGAGAGAGAGAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGCATTGAGAGACACAAGAGAGAGGGAGAGGGAGAGAGAGAGAG  350

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATCTGCAAGATTTTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATCTGCAAGATTTTA  400

seq1  TCTTTTTAAAACATAAAACTTTCATCTCAATCAAATAAGAACTATGGAAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAAACATAAAACTTTCATCTCAATCAAATAAGAACTATGGAAT  450

seq1  TTGAAATTGTTTAACTTTAGAGAGTAGGAAAATTTGTCTTTAATTTTGGT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTGTTTAACTTTAGAGAGTAGGAAAATTTGTCTTTAATTTTGGT  500

seq1  GACTTTTGATGTCATTGATGGGTTGTTATGTTTCAGTGAATTCTGGTACC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGATGTCATTGATGGGTTGTTATGTTTCAGTGAATTCTGGTACC  550

seq1  TATAAAGCTCAACTGTACCTTCCTAAGGTGATTTAATATGATCTAATTGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCTCAACTGTACCTTCCTAAGGTGATTTAATATGATCTAATTGT  600

seq1  CTTGTTGTCTTCTCAGAAATAGCTCTTGAGGAAAGAAATCAGGTAACATC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTCTTCTCAGAAATAGCTCTTGAGGAAAGAAATCAGGTAACATC  650

seq1  TACAGGAAGGAATTGTCACTTACACCTGTCTACCAGCATCCACACCTCTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAGGAATTGTCACTTACACCTGTCTACCAGCATCCACACCTCTT  700

seq1  TGTTTATACACCCCTGTTGTACCTTGCTAGTAAGGTTGTAGTCTGCCATG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATACACCCCTGTTGTACCTTGCTAGTAAGGTTGTAGTCTGCCATG  750

seq1  TGTGCATAGCTCTTCTGTGCTCAGTGCAAAACAGATTCCCTTTTCTGGCA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATAGCTCTTCTGTGCTCAGTGCAAAACAGATTCCCTTTTCTGGCA  800

seq1  ATGCTTCCTCTTTTCTGCCTGATTTGGGTAGCCCAAACCTCAATCCTTTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCTCTTTTCTGCCTGATTTGGGTAGCCCAAACCTCAATCCTTTT  850

seq1  TCTAAGAGATGTTACATAGTCCTTAGCAAACCTACAAGTTCAACTTTCTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGATGTTACATAGTCCTTAGCAAACCTACAAGTTCAACTTTCTT  900

seq1  TTTCCCTATAAGAATTCATCCAGAAAGTACCTGGAATTC  926
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTATAAGAATTCATCCAGAAAGTACCTGGAATTC  939


seq1: chr7_60271930_60273108
seq2: B6Ng01-324D14.g_68_1227

seq1  GAATTCAATATCATGATAGAAATGACTCAAATACAAAGTTTCTTAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCATGATAGAAATGACTCAAATACAAAGTTTCTTAAAATC  50

seq1  AGATTCATGTGTTTTATAGAGTTAGAGTTTAGTTTTGTTTATTGTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATGTGTTTTATAGAGTTAGAGTTTAGTTTTGTTTATTGTTTTTG  100

seq1  ATTTTTGTATAAATGGAATACCCTTACATTTGTACAAAATGTTTTAACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTATAAATGGAATACCCTTACATTTGTACAAAATGTTTTAACGT  150

seq1  AATTCCTGTATCTGTTTATGATCAAAACAGACTATAATTCTGCTCCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGTATCTGTTTATGATCAAAACAGACTATAATTCTGCTCCCAAT  200

seq1  GCTGTTAACAGTCAGCTGTGCCATATACTAAATAATAAAAACTAATACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAACAGTCAGCTGTGCCATATACTAAATAATAAAAACTAATACAA  250

seq1  TGCAGCCGTAGCAGGCTTCATGTTGCTACTAACCTTAATGGTCAAACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCGTAGCAGGCTTCATGTTGCTACTAACCTTAATGGTCAAACATG  300

seq1  CTTATGGTTCTGATATCATAGCCCAGTGGCACTATAGCCATCTTGGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGTTCTGATATCATAGCCCAGTGGCACTATAGCCATCTTGGATAA  350

seq1  AATACAATACTCTATGATATCCTTACAAAGATGAAATTGCTTGTAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATACTCTATGATATCCTTACAAAGATGAAATTGCTTGTAATACA  400

seq1  GATCTCTGCGAATGTCCCCATCACTTAATGTTCCATAGCTTTTTCCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGCGAATGTCCCCATCACTTAATGTTCCATAGCTTTTTCCATCT  450

seq1  CAAACAGCAGGAGAAACTCTAGAAGAAGACAAAGCAGAAAATGAAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCAGGAGAAACTCTAGAAGAAGACAAAGCAGAAAATGAAAGCAG  500

seq1  AGGGTTTCATCTTGAAGCAGATATTTGGAATGTCTCAACTAAGGATCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCATCTTGAAGCAGATATTTGGAATGTCTCAACTAAGGATCCGG  550

seq1  TAAACTCACTGAATATGAGCAAGCAGTCAACTAAGTAGCTATGAAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCACTGAATATGAGCAAGCAGTCAACTAAGTAGCTATGAAATAAT  600

seq1  CCCCTGGACAAATTAAATGCTCAACGAAAAAGCCCTGAAGCAGTAATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGACAAATTAAATGCTCAACGAAAAAGCCCTGAAGCAGTAATCTT  650

seq1  AGTCCTGTATGACAAAGTCAACCCGGACAGAGAGACGGCAGCTTGGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGTATGACAAAGTCAACCCGGACAGAGAGACGGCAGCTTGGATAT  700

seq1  TTTAATAGTGATACTGACATCTGTGAGAAAGGAACAGAAAGGCCTTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGTGATACTGACATCTGTGAGAAAGGAACAGAAAGGCCTTGGGG  750

seq1  TGTTTCTTTCAAGGAGTAGTGTGCTGTCACATTTGAGGAAAATTACTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTCAAGGAGTAGTGTGCTGTCACATTTGAGGAAAATTACTCTG  800

seq1  TAACTATGTGAGAAACAATGTGGATATTTACTCAGGTGAGATAAAATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATGTGAGAAACAATGTGGATATTTACTCAGGTGAGATAAAATGAT  850

seq1  AATTTTATCAAGAAGCAGGAACCAATAGACATGACAAAGGTAGTTGCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATCAAGAAGCAGGAACCAATAGACATGACAAAGGTAGTTGCAGT  900

seq1  GCAAACAGATTTTAGGACAGGTGGCAGAATTCCATCAGAAGCAGTTTTAT  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-AACAGATTTTAGGACAGGTGGCAGAATTCCATCAGAAGCAGTTTTAT  949

seq1  GTCTGAGTAAAGGAAAGGCAGAAGAATGACCCCAAAGTGACCCGAGCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGTAAAGGAAAGGCAGAAGAATGACCCCAAAGTGACCCGAGCAGT  999

seq1  GAGAAACAGAGCCTCAACAATAACCCAGGAATCACAGAAGGAAAAGAAAT  1050
      ||||||||||||||| |||||||| |||||||||||||  ||||   |||
seq2  GAGAAACAGAGCCTC-ACAATAACTCAGGAATCACAGA--GAAA--GAAT  1044

seq1  CAAGTGAC--ACCACTCAGTGTTTAATTTTGAGAAACCTGTTAGCTGTCT  1098
      ||||||||   ||||||||||||||  ||||||||| ||| |||||||||
seq2  CAAGTGACCACCCACTCAGTGTTTA--TTTGAGAAA-CTG-TAGCTGTCT  1090

seq1  GAGAATTCCATAATCAGTTGCATAAATGAGTGTGAAAGACAGGGAAGGGA  1148
      ||||    ||||||||| |||||||  ||  ||| | ||| |     | |
seq2  GAGA---TCATAATCAG-TGCATAATGGA--GTGCAGGACTG---TAGTA  1131

seq1  ACTGGGAGGAAATACATG-CCTATTATCAGGG  1179
      ||||||||   || |||| |||||||||||||
seq2  ACTGGGAG---ATTCATGCCCTATTATCAGGG  1160


| Home | SequenceCutter | Blast | Download |