BAC Information

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BAC

Clone NameB6Ng01-324H02
Chromosome7 (Build37)
Map Location 86,742,376 - 86,864,230
singlet/doubletdoublet
Overlap geneRhcg, 5730590G19Rik
Upstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517
Downstream genePlin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324H02.bB6Ng01-324H02.g
ACCGA112755GA112756
length1,1311,089
definitionB6Ng01-324H02.b B6Ng01-324H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,742,376 - 86,743,511)(86,863,149 - 86,864,230)
sequence
gaattctgctgctgaggcagactcctctgggagcttgttcatctgtagat
tcccagaccttccgaatgaagccccattggtgggcatcaagtgacaattt
ttaaagtaatcactatggagtctgggtttggacaccacactgattctctc
acaaagatgagtctcagaatcgccttcgaagttttacgaaatagtctcat
gtccaagccccaagccaccagaccagtggaacccaagctactgaatggga
gctctaagaagctctggtacagtggctctcagccttcctaatgctgtgtg
gccctttaatacagctcctcataattgtggtgaccccaaccacaaaatta
tttttgttgctacttcatcaatgtaattttgcaactgttacgagtcataa
cataaataccggataagtaggatacctgatgtgcgacccctgtcaagggg
ccattcgacccccaaaggagttgtgatccacacgcacaggtagagaacta
ctgctctagaggcttcccgggtgactctcagaggccaggaagcgtaaaaa
gccaccagcctaacagagaggctctcagacgggtctgccatcagagtcac
tcagatggctgttagtacttctgggtaggacaactttatttgtttgtttg
tttgtttgttttaaggatagggttgcgtatatcacaccaaacttactgca
tatctaagaatgactttgaacgtctggtccttttgcctcagccttctccc
tagactaggattacaaggtgacactgatgcagctagagttggggacagag
actgtggaagtttactagaacacagctggctgacattccaggttccagcc
ccatggcagctgctcctgtgactcccctcccagaacatgtagaaagaaat
gtatacaaagcccctttggggtccagagcggaaggagggagggtagggaa
aagagtcttcaatttacaggtgacacgtgcctacatcgatgtcaccagta
gtgaaggtgagctaccgtgtgcagagagacagtcgctagccgcttacctc
cagtagatggatctcaaacaggtctccatctgcagcctgtccctagaacc
gggcatttcaaattgaatccttaacgagatt
gaattccttagacccatgagtaccttcttgtggtacactatggttgacct
ctgggctctggcaggtctttgttgtaatgagttttatacctaaatccatg
gttttggagttcaaggatactacaaacagggcgagggagtggacaggggc
atgtgtgcatgtgaacatgactcacacccctcctaagaacacacctcact
cacgaatgctctggactgtggtgggcgtggacctggcaagaggggtcctt
agacgctgcggtgcagaagcagctcctctctagcagggctccatgggcag
tggctggacggagagcagactcaccctggacctcccccatcaccctggat
gcctcctgccccagttggacctcggtatccaccctgagagtccatctaca
acaaggcaacaaagcaaaacaaactgcgaaagtcctactgtatttattga
acatctgtatttccccttctgtaaagtggctgtccaacgtttaagtactt
ttcgcttggtaacttacttcggcatccatgcagcggccgcacatgccgcc
cttaactcatgcctcattgtttcttcacgattttttttaattagtagtta
ttttcgaaaaggttttattttgaattatgtgcataagtttgtgtgtctct
gtgggtttatgcacaagtgcagtgccccagggggccagaagatggtatct
gatcctgtgggcctggagttacagttgactgtgagctaggtgatgtgggt
actaggaaccaaattagggtcctctgcaagagcaacatgcatgtaggcac
tgatcaacttgacttaaattgattggctcataggttcagcagtttcagtc
cattatcatcaaggcgggagcatgacagcatccaagcacttcatgatgca
ggacgagacaaaagtgtcaccttcttgttccgaagacaaacgggagaaag
actggctttcaggcagcctaggatgaagggtctttaggcccatgtccaca
gtgacacttactcgacaagggccaatgcctactttacaggccacactctt
cagatttgtgccacttcctgggtcagtattactccaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_86742376_86743511
seq2: B6Ng01-324H02.b_46_1176

seq1  GAATTCTGCTGCTGAGGCAGACTCCTCTGGGAGCTTGTTCATCTGTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGCTGAGGCAGACTCCTCTGGGAGCTTGTTCATCTGTAGAT  50

seq1  TCCCAGACCTTCCGAATGAAGCCCCATTGGTGGGCATCAAGTGACAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACCTTCCGAATGAAGCCCCATTGGTGGGCATCAAGTGACAATTT  100

seq1  TTAAAGTAATCACTATGGAGTCTGGGTTTGGACACCACACTGATTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAATCACTATGGAGTCTGGGTTTGGACACCACACTGATTCTCTC  150

seq1  ACAAAGATGAGTCTCAGAATCGCCTTCGAAGTTTTACGAAATAGTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATGAGTCTCAGAATCGCCTTCGAAGTTTTACGAAATAGTCTCAT  200

seq1  GTCCAAGCCCCAAGCCACCAGACCAGTGGAACCCAAGCTACTGAATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGCCCCAAGCCACCAGACCAGTGGAACCCAAGCTACTGAATGGGA  250

seq1  GCTCTAAGAAGCTCTGGTACAGTGGCTCTCAGCCTTCCTAATGCTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGAAGCTCTGGTACAGTGGCTCTCAGCCTTCCTAATGCTGTGTG  300

seq1  GCCCTTTAATACAGCTCCTCATAATTGTGGTGACCCCAACCACAAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTAATACAGCTCCTCATAATTGTGGTGACCCCAACCACAAAATTA  350

seq1  TTTTTGTTGCTACTTCATCAATGTAATTTTGCAACTGTTACGAGTCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGCTACTTCATCAATGTAATTTTGCAACTGTTACGAGTCATAA  400

seq1  CATAAATACCGGATAAGTAGGATACCTGATGTGCGACCCCTGTCAAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATACCGGATAAGTAGGATACCTGATGTGCGACCCCTGTCAAGGGG  450

seq1  CCATTCGACCCCCAAAGGAGTTGTGATCCACACGCACAGGTAGAGAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCGACCCCCAAAGGAGTTGTGATCCACACGCACAGGTAGAGAACTA  500

seq1  CTGCTCTAGAGGCTTCCCGGGTGACTCTCAGAGGCCAGGAAGCGTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTAGAGGCTTCCCGGGTGACTCTCAGAGGCCAGGAAGCGTAAAAA  550

seq1  GCCACCAGCCTAACAGAGAGGCTCTCAGACGGGTCTGCCATCAGAGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGCCTAACAGAGAGGCTCTCAGACGGGTCTGCCATCAGAGTCAC  600

seq1  TCAGATGGCTGTTAGTACTTCTGGGTAGGACAACTTTATTTGTTTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGCTGTTAGTACTTCTGGGTAGGACAACTTTATTTGTTTGTTTG  650

seq1  TTTGTTTGTTTTAAGGATAGGGTTGCGTATATCACACCAAACTTACTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTAAGGATAGGGTTGCGTATATCACACCAAACTTACTGCA  700

seq1  TATCTAAGAATGACTTTGAACGTCTGGTCCTTTTGCCTCAGCCTTCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGAATGACTTTGAACGTCTGGTCCTTTTGCCTCAGCCTTCTCCC  750

seq1  TAGACTAGGATTACAAGGTGACACTGATGCAGCTAGAGTTGGGGACAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGGATTACAAGGTGACACTGATGCAGCTAGAGTTGGGGACAGAG  800

seq1  ACTGTGGAAGTTTACTAGAACACAGCTGGCTGACATTCCAGGTTCCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGAAGTTTACTAGAACACAGCTGGCTGACATTCCAGGTTCCAGCC  850

seq1  CCATGGCAGGCTGCTCCTGTGACTCCCCTCCCAGAACATGTAGAAAGAAA  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCA-GCTGCTCCTGTGACTCCCCTCCCAGAACATGTAGAAAGAAA  899

seq1  TGTATACAAAGCCCCTTTGGGGTCCAGAGCGGAAAGGAGGGAGGGTAGGG  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTATACAAAGCCCCTTTGGGGTCCAGAGCGG-AAGGAGGGAGGGTAGGG  948

seq1  AAAAGAGTCTTCAATTTACAGGTGACACCGTGCCCTACATCGATGTCA-C  999
      ||||||||||||||||||||||||||| |||| ||||||||||||||| |
seq2  AAAAGAGTCTTCAATTTACAGGTGACA-CGTG-CCTACATCGATGTCACC  996

seq1  AGTAGGTGAGGTGAGGCTACCGTGTGCAGAGAGACAGGTCGCTAG-CGCT  1048
      |||||   |||||| ||||||||||||||||||||| |||||||| ||||
seq2  AGTAGTGAAGGTGA-GCTACCGTGTGCAGAGAGACA-GTCGCTAGCCGCT  1044

seq1  TACCTCCCAGTAGATGGAATCCTCAAAACAGTTCT-CATCTGCAGCTTGT  1097
      ||||| ||||||||||||   ||| |||||| ||| |||||||||| |||
seq2  TACCT-CCAGTAGATGGA--TCTC-AAACAGGTCTCCATCTGCAGCCTGT  1090

seq1  CCCCAGAA-CGGCAATTTCAAAATGAATCC-TAAAGAGATT  1136
      ||| |||| |||  |||||||| ||||||| ||| ||||||
seq2  CCCTAGAACCGGGCATTTCAAATTGAATCCTTAACGAGATT  1131

seq1: chr7_86863149_86864230
seq2: B6Ng01-324H02.g_65_1153 (reverse)

seq1  GTTTGGA--TATACTTGACCCAGGGAGTGGCAC-AATCTGGAG-GTGTGG  46
      |||||||   |||| ||||||||| |||||||| |||||| || ||||||
seq2  GTTTGGAGTAATAC-TGACCCAGGAAGTGGCACAAATCTGAAGAGTGTGG  49

seq1  CCTTGTTGAAGTAGGCATTGG-CCTTGTCGGAGTTAGTGTCACTGTGGAC  95
      |||   | ||||||||||||| ||||||| |||| |||||||||||||||
seq2  CCT--GTAAAGTAGGCATTGGCCCTTGTC-GAGTAAGTGTCACTGTGGAC  96

seq1  ATGGGCCTTAAGACCC-TCATCCTA-GCTGCCTGGAAGCCAGTC-TTCTC  142
      |||||||| ||||||| |||||||| |||||||| ||||||||| |||||
seq2  ATGGGCCTAAAGACCCTTCATCCTAGGCTGCCTGAAAGCCAGTCTTTCTC  146

seq1  CCGTTTGTCTTCGGAACAAG-AGGTGGCACTTTTGTCTCGTCCTGCATCA  191
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  CCGTTTGTCTTCGGAACAAGAAGGTGACACTTTTGTCTCGTCCTGCATCA  196

seq1  TG-AGTGCTTGGATGCTGTCATGCTCCCGCCTTGATGATAATGGACTG-A  239
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAAGTGCTTGGATGCTGTCATGCTCCCGCCTTGATGATAATGGACTGAA  246

seq1  ACTGCTGAACCTATGAGCCAATCAATTTAAGTCAAGTTGATCAGTGCCTA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAACCTATGAGCCAATCAATTTAAGTCAAGTTGATCAGTGCCTA  296

seq1  CATGCATGTTGCTCTTGCAGAGGACCCTAATTTGGTTCCTAGTACCCACA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGTTGCTCTTGCAGAGGACCCTAATTTGGTTCCTAGTACCCACA  346

seq1  TCACCTAGCTCACAGTCAACTGTAACTCCAGGCCCACAGGATCAGATACC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAGCTCACAGTCAACTGTAACTCCAGGCCCACAGGATCAGATACC  396

seq1  ATCTTCTGGCCCCCTGGGGCACTGCACTTGTGCATAAACCCACAGAGACA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGGCCCCCTGGGGCACTGCACTTGTGCATAAACCCACAGAGACA  446

seq1  CACAAACTTATGCACATAATTCAAAATAAAACCTTTTCGAAAATAACTAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTTATGCACATAATTCAAAATAAAACCTTTTCGAAAATAACTAC  496

seq1  TAATTAAAAAAAATCGTGAAGAAACAATGAGGCATGAGTTAAGGGCGGCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAAAAATCGTGAAGAAACAATGAGGCATGAGTTAAGGGCGGCA  546

seq1  TGTGCGGCCGCTGCATGGATGCCGAAGTAAGTTACCAAGCGAAAAGTACT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGCCGCTGCATGGATGCCGAAGTAAGTTACCAAGCGAAAAGTACT  596

seq1  TAAACGTTGGACAGCCACTTTACAGAAGGGGAAATACAGATGTTCAATAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGTTGGACAGCCACTTTACAGAAGGGGAAATACAGATGTTCAATAA  646

seq1  ATACAGTAGGACTTTCGCAGTTTGTTTTGCTTTGTTGCCTTGTTGTAGAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAGGACTTTCGCAGTTTGTTTTGCTTTGTTGCCTTGTTGTAGAT  696

seq1  GGACTCTCAGGGTGGATACCGAGGTCCAACTGGGGCAGGAGGCATCCAGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTCAGGGTGGATACCGAGGTCCAACTGGGGCAGGAGGCATCCAGG  746

seq1  GTGATGGGGGAGGTCCAGGGTGAGTCTGCTCTCCGTCCAGCCACTGCCCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGGGAGGTCCAGGGTGAGTCTGCTCTCCGTCCAGCCACTGCCCA  796

seq1  TGGAGCCCTGCTAGAGAGGAGCTGCTTCTGCACCGCAGCGTCTAAGGACC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCCTGCTAGAGAGGAGCTGCTTCTGCACCGCAGCGTCTAAGGACC  846

seq1  CCTCTTGCCAGGTCCACGCCCACCACAGTCCAGAGCATTCGTGAGTGAGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCCAGGTCCACGCCCACCACAGTCCAGAGCATTCGTGAGTGAGG  896

seq1  TGTGTTCTTAGGAGGGGTGTGAGTCATGTTCACATGCACACATGCCCCTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTAGGAGGGGTGTGAGTCATGTTCACATGCACACATGCCCCTG  946

seq1  TCCACTCCCTCGCCCTGTTTGTAGTATCCTTGAACTCCAAAACCATGGAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCCTCGCCCTGTTTGTAGTATCCTTGAACTCCAAAACCATGGAT  996

seq1  TTAGGTATAAAACTCATTACAACAAAGACCTGCCAGAGCCCAGAGGTCAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATAAAACTCATTACAACAAAGACCTGCCAGAGCCCAGAGGTCAA  1046

seq1  CCATAGTGTACCACAAGAAGGTACTCATGGGTCTAAGGAATTC  1082
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTGTACCACAAGAAGGTACTCATGGGTCTAAGGAATTC  1089