BAC Information

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BAC

Clone NameB6Ng01-325H06
Chromosome7 (Build37)
Map Location 7,533,060 - 7,597,649
singlet/doubletdoublet
Overlap geneLOC665470, EG665474, EG628368
Upstream geneZim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33
Downstream geneLOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325H06.bB6Ng01-325H06.g
ACCGA113507GA113508
length1,1501,099
definitionB6Ng01-325H06.b B6Ng01-325H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,596,490 - 7,597,649)(7,533,060 - 7,534,179)
sequence
gaattctgcacaagaatttccaaataaataatctattgtaaaactacatt
tacattagattttagtcacaataggagcccatgaagaactgaatataata
tctaatctactggattagcttatgagactgctaggggcaaagtctatttt
ctctgtaagattaatatagaagacaaaaaattgcaaatatatgagaaaat
gctaactatgcactattaagaggaccatgaaggatcttttagcacaaagt
atctacagagataattttttccttctgtgctaaaattagtgcatctcatg
aacaataaccagaactttgattaattattgccagatgagcaaacttctta
gggcttatttcattaacatttcctgctattcaaacataagcattatattt
cctctctattcaaacttcttcacatgacttgttacaggaatcacttaaat
tcaataatgcaagtgctactttagcatgaacacacacatatcagtattta
cacatacacacagccgatctgtttaatttagtgtagtttctatgtcaagg
agtttgagcttgtgaattcttgagtagctattatacttgtcccagtaaag
ggcagagtttcaatgtgtcacagggaataaatttataaaatagtcagtgg
tctcaaaaaacagtgagtgtagggttttgaagttctaaaatagacccgac
cacattgtggtttatgaatgtatcttctctgaattaaataatctacttga
tatcaaaatagaaacaaaaatggcttagaaatttttgctttctgataaca
ttattttttattttttacattccatattctattccccacgctcccatacc
ccatccaatatgtcacattccacacctcttccccaccccaactgtcttca
tgttgatccccccatcctccaacccacctgacctctaaactccctgtgac
ctccaggcttttgagtattagtgcatcatttcagtatgatcacagacatg
gaagtcctctactgtatatgattgaggacccatattcagctgtgtatgct
gtctgtttgatgctctgtgtctgagagattctctgcagtcagaatattga
agagagctgtcttttctgcaatcgctttccctcagctactttcagcttcc

gaattctcacctgaggaataccgaatggctgagaaacacctgaaaagatg
ttcagcatccttaatcatcagagaaatgaaaatcaaaataaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgaacca
gatgctggtgagcatgtggagaaagaggaacactcctcgaactcagaaat
ctgcctgcctctgcctctcaagtgctgggattaaaggtgtgtgccaacat
gcctggctcccatcattttctttaactgtatattaaccctttgttatatt
tgaaagactattttgagttagagtatggaatgtctgcatactttctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttcttcctttctttccttcttgcttgcttgcttgctcccttgctccct
tccttccttcctttccctttccctctttccctctttctttccctctttcc
ctctttctttccctctttcactctttccctctttctttccctctttcccc
tcttcccctctttctttctttctttctttctttctttctttctttctttc
tttctttctttctttctttctttctttctttctttctttcctccctccct
ccctccctccctccttccttccttccttcctttccttctttctttctttt
ttttttttttcgagacagggtttctctatatagccctggctgtcctggaa
ctttctttgtagaccaggctggcctcgaactcagaaatctgcctgcctct
gcctctcaagtgctggaattaaaggtatgtgccaacatgcctggctccca
tcattttttttaactgtatattaaccctttgtatatttgaaatactattt
tgtgttggagtatggaaaatctgcatacttttgtactttatgatattata
ttaagtagtgtctccatatcacacatggctgtttgactcacaatataggt
aagactcgaagaaacagaacgagattttcgatttgttctctaagtgctga
atgaaaacatgatcaaaaaacaactgacatttctgacttcatagataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7596490_7597649
seq2: B6Ng01-325H06.b_43_1192 (reverse)

seq1  GGAAGGCTGAAAGTAGCTGAGGGGAAAGGCGATTTTGCAGAAAGACCAGC  50
      |||| ||||||||||||||||||  || ||||  |||||||||   ||||
seq2  GGAA-GCTGAAAGTAGCTGAGGG--AAAGCGA--TTGCAGAAAAGACAGC  45

seq1  TCTCTCAATTAATCTGGACTGCAGAG-ATCTCTCAGACACAGGAGCATCA  99
      |||||  | || ||| |||||||||| |||||||||||||| ||||||||
seq2  TCTCTTCAATATTCT-GACTGCAGAGAATCTCTCAGACACA-GAGCATCA  93

seq1  AACAGACAGCATACACCAGCTG-ATATGGGTCCCTCAATTCATATACAGT  148
      ||||||||||||||| |||||| |||||||| |||||| |||||||||||
seq2  AACAGACAGCATACA-CAGCTGAATATGGGT-CCTCAA-TCATATACAGT  140

seq1  AGAGGACTTCCATGTCTGTGATCATACTGAAATGATGCACCTAATACTCA  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAGGACTTCCATGTCTGTGATCATACTGAAATGATGCA-CTAATACTCA  189

seq1  AAAGCCTGGAGGTCACAGGGAGTTTAGAGGTCAGGTGGGTTGGAGGATGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGGAGGTCACAGGGAGTTTAGAGGTCAGGTGGGTTGGAGGATGG  239

seq1  GGGGATCAACATGAAGACAGTTGGGGTGGGGAAGAGGTGTGGAATGTGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCAACATGAAGACAGTTGGGGTGGGGAAGAGGTGTGGAATGTGAC  289

seq1  ATATTGGATGGGGTATGGGAGCGTGGGGAATAGAATATGGAATGTAAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGATGGGGTATGGGAGCGTGGGGAATAGAATATGGAATGTAAAAA  339

seq1  ATAAAAAATAATGTTATCAGAAAGCAAAAATTTCCTAAGCCATTTTTGTT  398
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAAAAAATAATGTTATCAGAAAGCAAAAATTT-CTAAGCCATTTTTGTT  388

seq1  TCTATTTTGATATCAAGTAGATTATTTAATTCAGAGAAGATACATTCATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTGATATCAAGTAGATTATTTAATTCAGAGAAGATACATTCATA  438

seq1  AACCACAATGTGGTCGGGTCTATTTTAGAACTTCAAAACCCTACACTCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAATGTGGTCGGGTCTATTTTAGAACTTCAAAACCCTACACTCAC  488

seq1  TGTTTTTTGAGACCACTGACTATTTTATAAATTTATTCCCTGTGACACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGAGACCACTGACTATTTTATAAATTTATTCCCTGTGACACAT  538

seq1  TGAAACTCTGCCCTTTACTGGGACAAGTATAATAGCTACTCAAGAATTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCTGCCCTTTACTGGGACAAGTATAATAGCTACTCAAGAATTCA  588

seq1  CAAGCTCAAACTCCTTGACATAGAAACTACACTAAATTAAACAGATCGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCAAACTCCTTGACATAGAAACTACACTAAATTAAACAGATCGGC  638

seq1  TGTGTGTATGTGTAAATACTGATATGTGTGTGTTCATGCTAAAGTAGCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTAAATACTGATATGTGTGTGTTCATGCTAAAGTAGCAC  688

seq1  TTGCATTATTGAATTTAAGTGATTCCTGTAACAAGTCATGTGAAGAAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTATTGAATTTAAGTGATTCCTGTAACAAGTCATGTGAAGAAGTT  738

seq1  TGAATAGAGAGGAAATATAATGCTTATGTTTGAATAGCAGGAAATGTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGAGAGGAAATATAATGCTTATGTTTGAATAGCAGGAAATGTTAA  788

seq1  TGAAATAAGCCCTAAGAAGTTTGCTCATCTGGCAATAATTAATCAAAGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAGCCCTAAGAAGTTTGCTCATCTGGCAATAATTAATCAAAGTT  838

seq1  CTGGTTATTGTTCATGAGATGCACTAATTTTAGCACAGAAGGAAAAAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTATTGTTCATGAGATGCACTAATTTTAGCACAGAAGGAAAAAATT  888

seq1  ATCTCTGTAGATACTTTGTGCTAAAAGATCCTTCATGGTCCTCTTAATAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTAGATACTTTGTGCTAAAAGATCCTTCATGGTCCTCTTAATAG  938

seq1  TGCATAGTTAGCATTTTCTCATATATTTGCAATTTTTTGTCTTCTATATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGTTAGCATTTTCTCATATATTTGCAATTTTTTGTCTTCTATATT  988

seq1  AATCTTACAGAGAAAATAGACTTTGCCCCTAGCAGTCTCATAAGCTAATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTACAGAGAAAATAGACTTTGCCCCTAGCAGTCTCATAAGCTAATC  1038

seq1  CAGTAGATTAGATATTATATTCAGTTCTTCATGGGCTCCTATTGTGACTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGATTAGATATTATATTCAGTTCTTCATGGGCTCCTATTGTGACTA  1088

seq1  AAATCTAATGTAAATGTAGTTTTACAATAGATTATTTATTTGGAAATTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAATGTAAATGTAGTTTTACAATAGATTATTTATTTGGAAATTCT  1138

seq1  TGTGCAGAATTC  1160
      ||||||||||||
seq2  TGTGCAGAATTC  1150

seq1: chr7_7533060_7534179
seq2: B6Ng01-325H06.g_67_1165

seq1  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAACACCTGAAAAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAACACCTGAAAAGATG  50

seq1  TTCAGCATCCTTAATCATCAGAGAAATGAAAATCAAAATAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATCCTTAATCATCAGAGAAATGAAAATCAAAATAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAACCA  150

seq1  GATGCTGGTGAGCATGTGGAGAAAGAGGAACACTCCTCGAACTCAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGTGAGCATGTGGAGAAAGAGGAACACTCCTCGAACTCAGAAAT  200

seq1  CTGCCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGTGTGTGCCAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGTGTGTGCCAACAT  250

seq1  GCCTGGCTCCCATCATTTTCTTTAACTGTATATTAACCCTTTGTTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTCCCATCATTTTCTTTAACTGTATATTAACCCTTTGTTATATT  300

seq1  TGAAAGACTATTTTGAGTTAGAGTATGGAATGTCTGCATACTTTCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACTATTTTGAGTTAGAGTATGGAATGTCTGCATACTTTCTTTCT  350

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  400

seq1  CTTTCTTCCTTTCTTTCCTTCTTGCTTGCTTGCTTGCTCCCTTGCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCTTTCTTTCCTTCTTGCTTGCTTGCTTGCTCCCTTGCTCCCT  450

seq1  TCCTTCCTTCCTTTCCCTTTCCCTCTTTCCCTCTTTCTTTCCCTCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTTCCCTTTCCCTCTTTCCCTCTTTCTTTCCCTCTTTCC  500

seq1  CTCTTTCTTTCCCTCTTTCACTCTTTCCCTCTTTCTTTCCCTCTTTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTTCCCTCTTTCACTCTTTCCCTCTTTCTTTCCCTCTTTCCCC  550

seq1  TCTTCCCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  600
      ||||||||    ||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCC----TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  596

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTCCCT  646

seq1  CCCTCCCTCCCTCCCTCCTTCCTTCCTTCCTTCCTTTCCTTCTTTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCCCTCCCTCCTTCCTTCCTTCCTTCCTTTCCTTCTTTCTTTC  696

seq1  TTTTTTTTTTTTTTCGAGACAGGGTTTCTCTATATAGCCCTGGCTGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTCGAGACAGGGTTTCTCTATATAGCCCTGGCTGTCCT  746

seq1  GGAACTTTCTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTCTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGC  796

seq1  CTCTGCCTCTCAAGTGCTGGAATTAAAGGTATGTGCCAACATGCCTGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTCAAGTGCTGGAATTAAAGGTATGTGCCAACATGCCTGGCT  846

seq1  CCCATCATTTTTTTTAACTGTATATTAACCCTTTGTTATATTTGAAATAC  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCCATCATTTTTTTTAACTGTATATTAACCCTTTG-TATATTTGAAATAC  895

seq1  TATTTTGTGTTGGAGTATGGAAAATCTGCATACTTTTGTACTTTATGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGTTGGAGTATGGAAAATCTGCATACTTTTGTACTTTATGATA  945

seq1  ATTTATATTAAGGTAGTGTCTCCATATCACACATGGCTGTTTTGGACTCA  1000
        ||||||||| ||||||||||||||||||||||||||||||  ||||||
seq2  --TTATATTAA-GTAGTGTCTCCATATCACACATGGCTGTTT--GACTCA  990

seq1  CAATATAGGGTAGACTCGGAAGAAACAGACAGAGATTTTCAGATTTTGTC  1050
      |||||||||  |||||| |||||||||||  ||||||||| |||||  ||
seq2  CAATATAGGTAAGACTC-GAAGAAACAGAACGAGATTTTC-GATTTGTTC  1038

seq1  TCTAAAGTGCTTGGATGAAAACATGAATCACAAAAACAACCTGACAATTT  1100
      ||| |||||| || ||||||||||| |||| |||||||| ||||||   |
seq2  TCT-AAGTGC-TGAATGAAAACATG-ATCA-AAAAACAA-CTGACA---T  1080

seq1  TTCTGACTTTCATAGATAAA  1120
      ||||||| ||||||||||||
seq2  TTCTGAC-TTCATAGATAAA  1099