BAC Information

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BAC

Clone NameB6Ng01-325M11
Chromosome7 (Build37)
Map Location 10,672,529 - 10,673,710
singlet/doubletsinglet
Overlap geneLOC100042921
Upstream geneLOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152
Downstream geneVmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325M11.b
ACCGA113749
length1,181
definitionB6Ng01-325M11.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaaatatttgttcagaaatatgatttttccctgatcttttggg
tagaatttctctctggtcgcattaaaatgatataaatcttgggtacaaaa
atacatccaagcatccctgcactggatgccaagatggagaagatctccac
agcaaccatgtgtttgcccttagtgctatggtagacagggaggaaggtga
cccagacactacagaatactagcatgctgaaggtcaagaacttggcttca
ttgaatgtgtcaggcagattcttggccaacaaagccacagagaagcttcc
aagtgccaggcaggccaaatatcccaggatacagtagaatgcagtatctg
agcccttgttgcacacaatgatgatgtggccatggagagtgtgttcatca
atatcaacaaagggaggagaaactgctagccagattgcacacagaacaca
ttggagtagggaacatatgggaataatgtagttgggtgtccctgatacca
ggaagtatctcaatcttcttcctgggtctgtgactttgaaagccagaacc
acaatgactgttttggccagaactgtggaaacagctacagtgaatacaat
tccaaatgtgatttgctgtaagacacagatgactctgtttggaaggccaa
tgaagaaaaaggagcacagaaaacagaacatgagtgacatgagtaatagg
tagctgaggcttctgttattggccttcacaataggagtgtcatggtgctt
cacaaagacacaaagtaccagagctgtgaatgcagagaaacagaaggcca
ttaaggcaagtgccatccccagggttcttcatagcttagaaaggtgacac
ctttctgaatacatttgttctgttcagtgttggcatattggtattctgga
caattcacgcattgatccatatctgatttccaaaggaaagcttagttagg
tctgctttagaaattttattgtcaatgtatttcagtaaaggtaatgaaag
aagccttgcatgctgcctttgatgctgatatgtaatgtgaaggatgctgt
tgccgagcattgatttcaattcatatgtccaataagatttaagaattaaa
cccagccatttgtacctttgttaactttaacttgattgatccgtttatga
atgttaatacaaagaggattttgtgcgtgtg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10672529_10673710
seq2: B6Ng01-325M11.b_42_1222

seq1  GAATTCCTAAATATTTGTTCAGAAATATGATTTTTCCCTGATCTTTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATATTTGTTCAGAAATATGATTTTTCCCTGATCTTTTGGG  50

seq1  TAGAATTTCTCTCTGGTCGCATTAAAATGATATAAATCTTGGGTACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTCTCTCTGGTCGCATTAAAATGATATAAATCTTGGGTACAAAA  100

seq1  ATACATCCAAGCATCCCTGCACTGGATGCCAAGATGGAGAAGATCTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCAAGCATCCCTGCACTGGATGCCAAGATGGAGAAGATCTCCAC  150

seq1  AGCAACCATGTGTTTGCCCTTAGTGCTATGGTAGACAGGGAGGAAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCATGTGTTTGCCCTTAGTGCTATGGTAGACAGGGAGGAAGGTGA  200

seq1  CCCAGACACTACAGAATACTAGCATGCTGAAGGTCAAGAACTTGGCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACACTACAGAATACTAGCATGCTGAAGGTCAAGAACTTGGCTTCA  250

seq1  TTGAATGTGTCAGGCAGATTCTTGGCCAAGAAAGCCACAGAGAAGCTTCC  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGAATGTGTCAGGCAGATTCTTGGCCAACAAAGCCACAGAGAAGCTTCC  300

seq1  AAGTGCCAGGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAGGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTATCTG  350

seq1  AGCCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCA  400

seq1  ATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACA  450

seq1  TTGGAGTAGGGAACATATGGGAATAATGTAGTTGGGTGTCCCTGATACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTAGGGAACATATGGGAATAATGTAGTTGGGTGTCCCTGATACCA  500

seq1  GGAAGTATCTCAATCTTCTTCCTGGGTCTGTGACTTTGAAAGCCAGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTATCTCAATCTTCTTCCTGGGTCTGTGACTTTGAAAGCCAGAACC  550

seq1  ACAATGACTGTTTTGGCCAGAACTGTGGAAACAGCTACAGTGAATACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGACTGTTTTGGCCAGAACTGTGGAAACAGCTACAGTGAATACAAT  600

seq1  TCCAAATGTGATTTGCTGTAAGACACAGATGACTCTGTTTGGAAGGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGTGATTTGCTGTAAGACACAGATGACTCTGTTTGGAAGGCCAA  650

seq1  TGAAGAAAAAGGAGCACAGAAAACAGAACATGAGTGACATGAGTAATAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAAGGAGCACAGAAAACAGAACATGAGTGACATGAGTAATAGG  700

seq1  TAGCTGAGGCTTCTGTTATTGGCCTTCACAATAGGAGTGTCATGGTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAGGCTTCTGTTATTGGCCTTCACAATAGGAGTGTCATGGTGCTT  750

seq1  CACAAAGACACAAAGTACCAGAGCTGTGAATGCAGAGAAACAGAAGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGACACAAAGTACCAGAGCTGTGAATGCAGAGAAACAGAAGGCCA  800

seq1  TTAAGGCAAGTGCCATCCCCAAGGGTTCTTCATAGCTTAGAAAGGTGACA  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAAGGCAAGTGCCATCCCC-AGGGTTCTTCATAGCTTAGAAAGGTGACA  849

seq1  CCTTTCTGAATACATTTGTTCTGTTCAGTGTTGGCATATTGGTATTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGAATACATTTGTTCTGTTCAGTGTTGGCATATTGGTATTCTGG  899

seq1  ACAATTCACGCATTGATCCATATCTGATTTCCAAAGGAAAGCTTAGTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCACGCATTGATCCATATCTGATTTCCAAAGGAAAGCTTAGTTAG  949

seq1  GTCTGCTTTAGAAATTTTATTGTCAATGTATTTCAAGTAAGGGTAATGAA  1000
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  GTCTGCTTTAGAAATTTTATTGTCAATGTATTTC-AGTAAAGGTAATGAA  998

seq1  AGAAGCCTTGCAATGCTGCCTTTGATGCTGATATGTAATGTGAAGGATGC  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTTGC-ATGCTGCCTTTGATGCTGATATGTAATGTGAAGGATGC  1047

seq1  TGTTGCCGAGCATTGATTTCAATTCATAATGTCCATAAAGATTTAAAGGA  1100
      ||||||||||||||||||||||||||| |||||||  |||||||||    
seq2  TGTTGCCGAGCATTGATTTCAATTCAT-ATGTCCAATAAGATTTAA---G  1093

seq1  AATAAAACCAAGCAATTTGTA-CTTTGTATAC-TTAACTTGATTGTATCG  1148
      ||| ||||| ||| ||||||| ||||||  || ||||||||||||   ||
seq2  AATTAAACCCAGCCATTTGTACCTTTGTTAACTTTAACTTGATTGATCCG  1143

seq1  TTTATG-ATGTTAATAGAAAGAGG--TTTGTG-GTGTG  1182
      |||||| ||||||||| |||||||  |||||| |||||
seq2  TTTATGAATGTTAATACAAAGAGGATTTTGTGCGTGTG  1181