BAC Information

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BAC

Clone NameB6Ng01-326A01
Chromosome7 (Build37)
Map Location 27,053,364 - 27,158,563
singlet/doubletdoublet
Overlap geneCyp2a4, Nlrp9c
Upstream geneCic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968
Downstream geneLOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326A01.bB6Ng01-326A01.g
ACCGA113920GA113921
length1,174983
definitionB6Ng01-326A01.b B6Ng01-326A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,157,383 - 27,158,563)(27,053,364 - 27,053,921)
sequence
gaattcaccaactcgcttctaatatgcaatgtagcttgtactgaagattt
ctatctcggtgggattccctggctctttcatggtaaacactctgtagacc
agccctgagttgctgtccttactaaatactctgcagaccagccctgagct
gccgactccgtcttttgtaatgtttaattagttactgaataggtaacttc
cttactgcatttctaccggattccaagctcatcagcttctggcacattgg
aacactggtgggagacttaactatatcagaattcaatcttaaaaggcact
tataataaaataatactaaaagagagcacatgggtccatacactagacta
actcgggcatagggtatgagtatacgggttaatgagaatgccaaagctcc
aggaggtgcgtttccgtgaaactctttgcctcatgagtgtttccaggcct
ctcgtcctcccaagcaaacttcactggagtgtgcatagcattatttaaag
tgtcatgggaaaccatgaacttcaggctcaggaagggtttaaggacatgt
tatattaattactgggagaaattcaacacatggtgatattgcacacgaat
ctgaaatcagtgatatgtactccacttatttctttatgacatatgtatta
taaccagaaggaatgagagtagaaacaccacataaagagatcaaagcaga
aaacttaggtgagccaatgtagagcagaggaccccagttgggactttatg
gttcatataaataagtcaagctgttaagatggaatttcatggactgggaa
tatagctcagttgatagaattcttactttgtatacacttttgagtttgac
tcttcagcacaggcttaaataaaagctatggtagctccataactataatc
tcagcactgggggataaagttaggaacttaaagtcatccttagctatgta
aagaatctgagcctggcttgtttacatgagattctatctaaaaaaggggc
aagaatgggaaaatgaaatgtggtccattgaataatggctgctggatgag
aatcattctccacaagggacgcctctgaccaggttatccaccccctgata
catgtacatacaagcaaagctaagtggactatagtgcatataacatgtac
aatattggtgcatgcacaagacat
gaattcatttctcttaggaaggcaaacaagagccatagaagattgagaga
gtaaacattgattacttttggcaattttatacctttctttatctctttgc
tattctgtggcccaaaatctctggcttttgccaattccctcttgctgata
gcagcagtggattaagaaaataagtttaactttggtaaatggtatttctg
cctagaaaatggtccattttgttaagatttttccaattttgtagtttata
ggcttttgtaataagaaatttcccagtgtctcttgttaagtctcactttt
catttctcattttgtttgtttggatactatctctctgtctttggttagtt
tgactaaggatttgtctgtcttgttgatttactcaaagaaatagcttttg
gtttctttgattttttaaaatcatttacatggtttctaactgcttgattt
aagccctgcttgagtatttcattttctactacacttttgtgtgcatgctc
tttttaaaaaatatttctagaaatttgaggtatagatttagattactgat
atgagaactttctaatttctttatgaagatacttagtgctatgaactttc
ctcttaagcctgctttcattgtgtcatataaatttgggtgtgaggcttaa
ttttcattgaattctggaaagtcttcaatttctttatttcttgcctgagc
tggagataatggaggtgaaaattgttcaatttcaattagtgtatagtgtt
tctgtttttttcctgtttttgaagtccagcattaattaatttgatggtag
tctgacaagatacaacacattatttcaattttactgtcacttaccaaact
taaattaagatgaggtaaacagccctataaccacaatagaaatagaagca
gtcatttaaaatccttggaactaaaatgcccagggtcatatagttttggt
gcagaattcctaccatacttccaggagagtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_27157383_27158563
seq2: B6Ng01-326A01.b_47_1220 (reverse)

seq1  ATGTC-TGTGCATGCAC--ATA-TGTACATG-TATATGCAACCTAATAAG  45
      ||||| |||||||||||  ||| |||||||| ||||||||  |||   ||
seq2  ATGTCTTGTGCATGCACCAATATTGTACATGTTATATGCA--CTA--TAG  46

seq1  TCCACTTAGCTTTGCTTGTATGTACATGTATCCAGGGGGTGGATAACCTG  95
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TCCACTTAGCTTTGCTTGTATGTACATGTAT-CAGGGGGTGGATAACCT-  94

seq1  GGTCAGA-GCGTCCCCTTGTGGAGAATGATTCTCCATTCCAGCAGCCATT  144
      ||||||| |||| |||||||||||||||||||||   |||||||||||||
seq2  GGTCAGAGGCGT-CCCTTGTGGAGAATGATTCTC--ATCCAGCAGCCATT  141

seq1  ATTC-ATTGACCACATTTCATTTTCCCATTCTTGCCCCCTTTTTTTAGAT  193
      |||| || ||||||||||||||||||||||||||||||  ||||||||||
seq2  ATTCAATGGACCACATTTCATTTTCCCATTCTTGCCCC--TTTTTTAGAT  189

seq1  AGAATCTCATGTAAACAAGCCAGGCTTCAGATTCTTTACATAGCTAAGGA  243
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAATCTCATGTAAACAAGCCAGGC-TCAGATTCTTTACATAGCTAAGGA  238

seq1  TGACTTTTAAGTTCCTAACTTTATCCCCCAGTGCTGAGATTATAGTTATG  293
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAC-TTTAAGTTCCTAACTTTATCCCCCAGTGCTGAGATTATAGTTATG  287

seq1  GAGCTACCATAGCTTTTATTTAAGCCTGTGCTGAAGAGTCAAACTCAAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACCATAGCTTTTATTTAAGCCTGTGCTGAAGAGTCAAACTCAAAA  337

seq1  GTGTATACAAAGTAAGAATTCTATCAACTGAGCTATATTCCCAGTCCATG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATACAAAGTAAGAATTCTATCAACTGAGCTATATTCCCAGTCCATG  387

seq1  AAATTCCATCTTAACAGCTTGACTTATTTATATGAACCATAAAGTCCCAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCATCTTAACAGCTTGACTTATTTATATGAACCATAAAGTCCCAA  437

seq1  CTGGGGTCCTCTGCTCTACATTGGCTCACCTAAGTTTTTCTGCTTTGATC  493
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGGGGTCCTCTGCTCTACATTGGCTCACCTAAG-TTTTCTGCTTTGATC  486

seq1  TCTTTATGTGGTGTTTCTACTCTCATTCCTTCTGGTTATAATACATATGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTGGTGTTTCTACTCTCATTCCTTCTGGTTATAATACATATGT  536

seq1  CATAAAGAAATAAGTGGAGTACATATCACTGATTTCAGATTCGTGTGCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGAAATAAGTGGAGTACATATCACTGATTTCAGATTCGTGTGCAA  586

seq1  TATCACCATGTGTTGAATTTCTCCCAGTAATTAATATAACATGTCCTTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCATGTGTTGAATTTCTCCCAGTAATTAATATAACATGTCCTTAA  636

seq1  ACCCTTCCTGAGCCTGAAGTTCATGGTTTCCCATGACACTTTAAATAATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCTGAGCCTGAAGTTCATGGTTTCCCATGACACTTTAAATAATG  686

seq1  CTATGCACACTCCAGTGAAGTTTGCTTGGGAGGACGAGAGGCCTGGAAAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCACACTCCAGTGAAGTTTGCTTGGGAGGACGAGAGGCCTGGAAAC  736

seq1  ACTCATGAGGCAAAGAGTTTCACGGAAACGCACCTCCTGGAGCTTTGGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGAGGCAAAGAGTTTCACGGAAACGCACCTCCTGGAGCTTTGGCA  786

seq1  TTCTCATTAACCCGTATACTCATACCCTATGCCCGAGTTAGTCTAGTGTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTAACCCGTATACTCATACCCTATGCCCGAGTTAGTCTAGTGTA  836

seq1  TGGACCCATGTGCTCTCTTTTAGTATTATTTTATTATAAGTGCCTTTTAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCATGTGCTCTCTTTTAGTATTATTTTATTATAAGTGCCTTTTAA  886

seq1  GATTGAATTCTGATATAGTTAAGTCTCCCACCAGTGTTCCAATGTGCCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATTCTGATATAGTTAAGTCTCCCACCAGTGTTCCAATGTGCCAG  936

seq1  AAGCTGATGAGCTTGGAATCCGGTAGAAATGCAGTAAGGAAGTTACCTAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGATGAGCTTGGAATCCGGTAGAAATGCAGTAAGGAAGTTACCTAT  986

seq1  TCAGTAACTAATTAAACATTACAAAAGACGGAGTCGGCAGCTCAGGGCTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACTAATTAAACATTACAAAAGACGGAGTCGGCAGCTCAGGGCTG  1036

seq1  GTCTGCAGAGTATTTAGTAAGGACAGCAACTCAGGGCTGGTCTACAGAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAGAGTATTTAGTAAGGACAGCAACTCAGGGCTGGTCTACAGAGT  1086

seq1  GTTTACCATGAAAGAGCCAGGGAATCCCACCGAGATAGAAATCTTCAGTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCATGAAAGAGCCAGGGAATCCCACCGAGATAGAAATCTTCAGTA  1136

seq1  CAAGCTACATTGCATATTAGAAGCGAGTTGGTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTACATTGCATATTAGAAGCGAGTTGGTGAATTC  1174

seq1: chr7_27053364_27053921
seq2: B6Ng01-326A01.g_65_622

seq1  GAATTCATTTCTCTTAGGAAGGCAAACAAGAGCCATAGAAGATTGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTCTTAGGAAGGCAAACAAGAGCCATAGAAGATTGAGAGA  50

seq1  GTAAACATTGATTACTTTTGGCAATTTTATACCTTTCTTTATCTCTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATTGATTACTTTTGGCAATTTTATACCTTTCTTTATCTCTTTGC  100

seq1  TATTCTGTGGCCCAAAATCTCTGGCTTTTGCCAATTCCCTCTTGCTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTGGCCCAAAATCTCTGGCTTTTGCCAATTCCCTCTTGCTGATA  150

seq1  GCAGCAGTGGATTAAGAAAATAAGTTTAACTTTGGTAAATGGTATTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTGGATTAAGAAAATAAGTTTAACTTTGGTAAATGGTATTTCTG  200

seq1  CCTAGAAAATGGTCCATTTTGTTAAGATTTTTCCAATTTTGTAGTTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAATGGTCCATTTTGTTAAGATTTTTCCAATTTTGTAGTTTATA  250

seq1  GGCTTTTGTAATAAGAAATTTCCCAGTGTCTCTTGTTAAGTCTCACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTGTAATAAGAAATTTCCCAGTGTCTCTTGTTAAGTCTCACTTTT  300

seq1  CATTTCTCATTTTGTTTGTTTGGATACTATCTCTCTGTCTTTGGTTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCATTTTGTTTGTTTGGATACTATCTCTCTGTCTTTGGTTAGTT  350

seq1  TGACTAAGGATTTGTCTGTCTTGTTGATTTACTCAAAGAAATAGCTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAGGATTTGTCTGTCTTGTTGATTTACTCAAAGAAATAGCTTTTG  400

seq1  GTTTCTTTGATTTTTTAAAATCATTTACATGGTTTCTAACTGCTTGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGATTTTTTAAAATCATTTACATGGTTTCTAACTGCTTGATTT  450

seq1  AAGCCCTGCTTGAGTATTTCATTTTCTACTACACTTTTGTGTGCATGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTGCTTGAGTATTTCATTTTCTACTACACTTTTGTGTGCATGCTC  500

seq1  TTTTTAAAAAATATTTCTAGAAATTTGAGGTATAGATTTAGATTACTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAATATTTCTAGAAATTTGAGGTATAGATTTAGATTACTGAT  550

seq1  ATGAGAAC  558
      ||||||||
seq2  ATGAGAAC  558