BAC Information

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BAC

Clone NameB6Ng01-326C16
Chromosome7 (Build37)
Map Location 135,160,102 - 135,302,957
singlet/doubletdoublet
Overlap geneLOC436010, EG668675, Itgam, Itgax
Upstream gene2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72
Downstream geneItgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326C16.bB6Ng01-326C16.g
ACCGA114042GA114043
length922918
definitionB6Ng01-326C16.b B6Ng01-326C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,160,102 - 135,161,023)(135,302,039 - 135,302,957)
sequence
gaattcctaccataccttgtaaagaaaataccactgcaaagttggacaac
aggatcatgggaagaagataataccccaggacacttgccacacaaccaaa
tgacacacctgtcatactcactaaatttaacaaataaaacattcctaagt
atccaattgcactgatcccatatacgtagccaaactggattttccagcca
ataataacagcgtggccccaaaggcaaggaagaacaccactgaccctgcc
aagtccgtctcattcatgatgctgccgtcagctgccctcagagggtgtag
caccgttagcgttttttttgccaaatgtcaaaattgatgcccaactcttc
taacagaaggggctcctcctcaaagctgtctccatagaatggctggttga
ggtgttgttggaggataggcctcatttggctggtaaatctgcccagtgta
tgtctgctgtggctgcatcatgtctggagggacaaatcggccttgctgcg
agcagtcacagccagcatactgcttgccgtggggtcctccacctcctcca
tagtcataggactgctgagattgctcgtcgatgctgtaactcatctggta
gaaactgctgtttaagttatcaaagcctgacattgccaacgatcaactgc
ttcggcagcggcggctgcgactccagctgcccctagtaacccctccaact
cagcttcagacctggcggaagcttggtcttcatgtgggtcccttagcaac
tgcagttggggctgcctctgattctgttgcctgccactggatctgggctg
ccatgctaggttcaataggagatgagcctggtcttacagcaacctgatat
gccaaggcaggttgatatccatgggacgcctccccttctctgaggagaaa
gggagagagggatgggggggtg
gaattctgtgttgaatccatctggtcctgaacatttgcctttaattaatg
cttttatctcactggaggttatctataggtctctttaagttgctgatctg
atcgtgatgtagttttgataggttatatacacatcaaaaaaacatatcca
ttttttcgtgttttccaacaacatttttttcaagtttttgatatgcattt
atttatataggagaaaaaaaatacatttgacatagggaacccaagcatga
atgccttcctagcaacggtctggcccaactgtgaccacatccacccaact
ctcaccaccctcgaaacagggttcactctctcttaaccacttatacgagg
tcagccctctaaaccttacaagtttatctatattgtcattgagcttagga
atttcaggtactcaaataatactatgtatgtacaattctgcttcattgca
cagggtcacaatatatagcaagtgattatatgaccaaccacaggataaac
gttgataggcacaaacatctgtctctaaccacaaaggaagcaaaacccca
atttgccacaatgcaaaggctgtgttgactctgctaccgtcctgagggtt
tacagcactggtgtgataaatgcaaagctcataagtgtctggtggcatca
cacaggacacacgggacactcgtgtcctgcactcatgagccacccgtgcc
acacatgtaacacaaaggccactttaaagcttttcagagagctctttagt
cttttttgtctctcaaaaatatcaccgcacgagtaaagactattaattac
gttctgacataaattccatagtggattacaagctctgattttatgtgtgt
cactcttaatttatcagagacagagccacctcctgtaatacactgcgatc
tagtctttaatagctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_135160102_135161023
seq2: B6Ng01-326C16.b_46_967

seq1  GAATTCCTACCATACCTTGTAAAGAAAATACCACTGCAAAGTTGGACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCATACCTTGTAAAGAAAATACCACTGCAAAGTTGGACAAC  50

seq1  AGGATCATGGGAAGAAGATAATACCCCAGGACACTTGCCACACAACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCATGGGAAGAAGATAATACCCCAGGACACTTGCCACACAACCAAA  100

seq1  TGACACACCTGTCATACTCACTAAATTTAACAAATAAAACATTCCTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACCTGTCATACTCACTAAATTTAACAAATAAAACATTCCTAAGT  150

seq1  ATCCAATTGCACTGATCCCATATACGTAGCCAAACTGGATTTTCCAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTGCACTGATCCCATATACGTAGCCAAACTGGATTTTCCAGCCA  200

seq1  ATAATAACAGCGTGGCCCCAAAGGCAAGGCAGAACACCACTGACCCTGCC  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAATAACAGCGTGGCCCCAAAGGCAAGGAAGAACACCACTGACCCTGCC  250

seq1  AAGTCCGTCTCATTCATGATGCTGCCGTCAGCTGCCCTCAGAGGGTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCGTCTCATTCATGATGCTGCCGTCAGCTGCCCTCAGAGGGTGTAG  300

seq1  CACCGTTAGCGTTTTTTTTGCCAAATGTCAAAATTGATGCCCAACTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTTAGCGTTTTTTTTGCCAAATGTCAAAATTGATGCCCAACTCTTC  350

seq1  TAACAGAGGGGGCTCCTCCTCAAAGCTGTCTCCATAGAATGGCTGGTTGA  400
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAGGGGCTCCTCCTCAAAGCTGTCTCCATAGAATGGCTGGTTGA  400

seq1  GGTGTTGTTGGAGGATAGGCCTCAGTTGGCTGGTAAATCTGCCCAGTGTA  450
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGTGTTGTTGGAGGATAGGCCTCATTTGGCTGGTAAATCTGCCCAGTGTA  450

seq1  TGTCTGCTGTGGCTGCATCATGTCTGGAGGGACAAATCGGCCTTGCTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGTGGCTGCATCATGTCTGGAGGGACAAATCGGCCTTGCTGCG  500

seq1  AGCAGTCACAGCCAGCATACTGCTTGCCGTGGGGTCCTCCACCTCCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCACAGCCAGCATACTGCTTGCCGTGGGGTCCTCCACCTCCTCCA  550

seq1  TAGTCATAGGACTGCTGAGATTGCTCGTCGATGCTGTAACTCATCTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATAGGACTGCTGAGATTGCTCGTCGATGCTGTAACTCATCTGGTA  600

seq1  GAAACTGCTGTTTAAGTTATCAAAGCCTGACATTGCCAACGATCAACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGCTGTTTAAGTTATCAAAGCCTGACATTGCCAACGATCAACTGC  650

seq1  TTCGGCAGCGGCGGCTGCGACTCCAGCTGCCCCTAGTAACCCCTCCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCAGCGGCGGCTGCGACTCCAGCTGCCCCTAGTAACCCCTCCAACT  700

seq1  CAGCTTCAGACCTGGCGGAAGCTTGGTCTTCATGTGGGTCCCTTAGCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCAGACCTGGCGGAAGCTTGGTCTTCATGTGGGTCCCTTAGCAAC  750

seq1  TGCAGTTGGGGCTGCCTCTGATTCTGTTGCCTGCCACTGGATCTGGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGGGGCTGCCTCTGATTCTGTTGCCTGCCACTGGATCTGGGCTG  800

seq1  CCATGCTAGGTTCAATAGGAGATGAGCCTGGTCTTACAGCAACCTGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTAGGTTCAATAGGAGATGAGCCTGGTCTTACAGCAACCTGATAT  850

seq1  GCCAAGGCAGGTTGATATCCATGGGACGCCTCCCCTTCTCTGAGGAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCAGGTTGATATCCATGGGACGCCTCCCCTTCTCTGAGGAGAAA  900

seq1  GGGAGAGAGGGATGGGGGGGTG  922
      ||||||||||||||||||||||
seq2  GGGAGAGAGGGATGGGGGGGTG  922

seq1: chr7_135302039_135302957
seq2: B6Ng01-326C16.g_64_981 (reverse)

seq1  TAGAGCTCTTAAAGACTAGATTGCAGTGTATTACA-GAGGTGGCTCTGTC  49
      ||||||| ||||||||||||| ||||||||||||| ||||||||||||||
seq2  TAGAGCTATTAAAGACTAGATCGCAGTGTATTACAGGAGGTGGCTCTGTC  50

seq1  TCTGATAAACTTAAGTTTGACAAAAATAAAATCAGAGCTTGTAATCCACT  99
      ||||||||| |||||  ||||| | |||||||||||||||||||||||||
seq2  TCTGATAAA-TTAAGAGTGACACACATAAAATCAGAGCTTGTAATCCACT  99

seq1  TTGAACTTTTATGTCAGAATGTAATTAATAGTCTTAACTCGTGCGGTGAT  149
       || |  |||||||||||| ||||||||||||||| ||||||||||||||
seq2  ATGGA-ATTTATGTCAGAACGTAATTAATAGTCTTTACTCGTGCGGTGAT  148

seq1  ATTTTTTAAAGACAAAAAAGACTAAAGAACTCTCTGAAAAGCTTTAAAGT  199
      |||||| | ||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTTTGAGAGACAAAAAAGACTAAAGAGCTCTCTGAAAAGCTTTAAAGT  198

seq1  GGCCTTTGTGTTACATGTGTGGCACGGGTGGCTCATGAGTGCAGGACACG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGTGTTACATGTGTGGCACGGGTGGCTCATGAGTGCAGGACACG  248

seq1  AGTGTCCCGTGTGTCCTGTCTGATGCCACCAGAAACCTATGAGCTTTGCA  299
      ||||||||||||||||||| ||||||||||||| || |||||||||||||
seq2  AGTGTCCCGTGTGTCCTGTGTGATGCCACCAGACACTTATGAGCTTTGCA  298

seq1  TTTAACACACCAGTGCTGTAAACCCTCAGGACGGTAGCAGAGTCAACACA  349
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACACCAGTGCTGTAAACCCTCAGGACGGTAGCAGAGTCAACACA  348

seq1  GCCTTTGCATTGTGGCAAATTGGGGTTTTGCTTCCTTTGTGGTTAGAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCATTGTGGCAAATTGGGGTTTTGCTTCCTTTGTGGTTAGAGAC  398

seq1  AGATGTTTGTGCCTATCAACGTTTATCTTGTGGTTGGTCATATAATCACT  449
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGATGTTTGTGCCTATCAACGTTTATCCTGTGGTTGGTCATATAATCACT  448

seq1  TGCTATATATTGTGACCCTGTGCAATGAAGCAGAATTGTACATACATAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATATTGTGACCCTGTGCAATGAAGCAGAATTGTACATACATAGT  498

seq1  ATTATTTGAGTACCTGAAATTCCTAAGCTCAATGACAATATAGATAAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGAGTACCTGAAATTCCTAAGCTCAATGACAATATAGATAAACT  548

seq1  TGTAAGGTTTAGAGGGCTGACCTCGTATAAGTGGTTAATAGAGAGTGAAC  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTAAGGTTTAGAGGGCTGACCTCGTATAAGTGGTTAAGAGAGAGTGAAC  598

seq1  CCTGTTTCGAGGGTGGTGAGAGCTGGGTGGATGTGGTCACAGCTGGGCCA  649
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  CCTGTTTCGAGGGTGGTGAGAGTTGGGTGGATGTGGTCACAGTTGGGCCA  648

seq1  GACTGTTGCTAGGAAGGCATTCATGCTTGGGTTCCCTATGTCAAATGTAT  699
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTTGCTAGGAAGGCATTCATGCTTGGGTTCCCTATGTCAAATGTAT  698

seq1  TTTTTTTCTCCTATATAAATAAATGCATATCAAAAACTTGAAAAAAATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTTTTCTCCTATATAAATAAATGCATATCAAAAACTTGAAAAAAATGT  748

seq1  TGTTGGAAAACACGAAAAAATGGATATGTTTTTTTGATGTGTATATAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAAACACGAAAAAATGGATATGTTTTTTTGATGTGTATATAACC  798

seq1  TATCAAAACTACATCAAGATCAGATCAGCAACTTAAAGAGACCTATAGAT  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATCAAAACTACATCACGATCAGATCAGCAACTTAAAGAGACCTATAGAT  848

seq1  AACCTCCAGTGAGATAAAAGCATTAATTAAAAATAAATGTTCAGGACCAG  899
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  AACCTCCAGTGAGATAAAAGCATTAATTAAAGGCAAATGTTCAGGACCAG  898

seq1  ATGGATTCAACACAGAATTC  919
      ||||||||||||||||||||
seq2  ATGGATTCAACACAGAATTC  918