BAC Information

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BAC

Clone NameB6Ng01-327F04
Chromosome7 (Build37)
Map Location 17,275,022 - 17,433,791
singlet/doubletdoublet
Overlap geneEG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2
Upstream geneLOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15
Downstream geneDact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327F04.bB6Ng01-327F04.g
ACCGA114899GA114900
length1,139615
definitionB6Ng01-327F04.b B6Ng01-327F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,432,645 - 17,433,791)(17,275,022 - 17,275,636)
sequence
gaattctgcctgtggtcaggcaacttgcacctgagatccccaacaggctg
cctgccctgaggattctggagctgcctggccaactcctccagataaactg
ttgctatttttctccttctgttctgtttctttgcttcatctctgattgac
acggagctcatttccatcaccacacctcaagatctccctagagatggctc
agcagttaaagcacttgtcttttgtacaggacaggagttcggttcctaac
ccccatgcaacatttgtggtccaacagacacattcgggcaaaacaccaat
gcacaaagcataaaaataaacaaaactaaataaatctccatcataagggc
cctatcttcctatgctctatgtcccatacctgaactctgaaaagggctct
gctctgtccaggaaccctgaacctcacttataccaagaatcacctcctag
gctctgtatccattccagggcccctcaaactttgcctgcctggagtccta
acttagcccaccagctccatgccccccccccccgggggggactctgccca
cagacctgaaccccaaccgcctcccaagttctcttagagcttctgtcact
tacttctaagctccattccttgaccttaacccagtccccgcatgcctttc
ctagcttcgcctaccatgtcgcaccttcccaggctccgcccagtcccctt
tggctctcaccatcgcacttgaggccctggcgcacgaggccgaagagcat
ctccccgcagtggtcacagaaggcgggagcgcggtacgagtgcacagtga
gagcatgcggtcggatctggaaatcctcgaaagtggccgaggctgtgggc
agcaaggagggaggatacacttgagccaagaggatgggtgcctggcttat
ggtagctggggctcacagagaaactctgtctcgaaacacacacaaacaca
cacacacacacacacacacacacacacacacacacacacacagctcccac
tgagcaaagcacctatgtgctctgataaagtgggagttagtgggagtttt
aaatggtaagaattgcgttgtggttgttgcagttgcatattcaggaccag
tccataatgccaagcagtggtttgcccaatgccttaatc
gaattcagcccgttttattctctcaactaaatggcagctcccagatatgc
ctgcagtttcctcaatgttcacccgggggaggatcaggacacaatcaaca
ctcagaaaagtatttgcccgagctagcaatttaccttgcagcctggctgc
catccctgtctcagatgactaagaggccccttccacgagtctgtgtgacc
tcctggcttcttcctatacctcagcacagtgatgttcccgggacctgtgc
agttccttctctgctggcatcttccatgagtaaagacagggcgaccacaa
gggaatggcttcctggataggggagggagggcatgggctgactgcatgcc
cagctcagccaacatggggagttagagtgcctcctagaaaccttccgtag
taagatggagccacagtcctcttccaggagtaagtgtcctcttctttaaa
ccctgaatgtaaaacccagacacatcgtgtctctagcggcatatgtatca
gaagatggcctagtcggccatcattgggaagagaggccccttggtcttac
aaactttatatgcctcagtacagggaaacgccagggccaagaagtgggag
tgggtgggtaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17432645_17433791
seq2: B6Ng01-327F04.b_44_1182 (reverse)

seq1  GATTAAAGGCATGTGCC--ACCACTGCCTGGCATTATGGGCTG--TCTTA  46
      |||| |||||||  | |  |||||||| ||||||||||| |||   || |
seq2  GATT-AAGGCATTGGGCAAACCACTGCTTGGCATTATGGACTGGTCCTGA  49

seq1  ATATTGCAACTGCAACAAAACAACAACACATTCTTTACCCATTTAAAAAC  96
      ||| ||||||||||||  ||| ||||| || |  ||| |||||| |||||
seq2  ATA-TGCAACTGCAAC--AACCACAACGCAATTCTTA-CCATTT-AAAAC  94

seq1  TCCCCACTAACTCCCACTTTATCAGGAGGCACATAGGTGCTTTGCTCAGT  146
      | |||||||||||||||||||||||   ||||||||||||||||||||||
seq2  T-CCCACTAACTCCCACTTTATCAG--AGCACATAGGTGCTTTGCTCAGT  141

seq1  GGGAAGCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  196
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGG-AGCT-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  189

seq1  TGTGTTTGTGTGTGTTTTCGAGACAGAGTTTCTCTGTGAGCCCCAGCTAC  246
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTGTGTG-TTTCGAGACAGAGTTTCTCTGTGAGCCCCAGCTAC  238

seq1  CATAAGCCAGGCACCCATCCTCTTGGCTCAAGTGTATCCTCCCTCCTTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCCAGGCACCCATCCTCTTGGCTCAAGTGTATCCTCCCTCCTTGC  288

seq1  TGCCCACAGCCTCGGCCACCTTCGAGGATTTCCAGATCCGACCGCATGCT  346
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCCCACAGCCTCGGCCACTTTCGAGGATTTCCAGATCCGACCGCATGCT  338

seq1  CTCACTGTGCACTCGTACCGCGCTCCCGCCTTCTGTGACCACTGCGGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTGCACTCGTACCGCGCTCCCGCCTTCTGTGACCACTGCGGGGA  388

seq1  GATGCTCTTCGGCCTCGTGCGCCAGGGCCTCAAGTGCGATGGTGAGAGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTTCGGCCTCGTGCGCCAGGGCCTCAAGTGCGATGGTGAGAGCC  438

seq1  AAAGGGGACTGGGCGGAGCCTGGGAAGGTGCGACATGGTAGGCGAAGCTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGACTGGGCGGAGCCTGGGAAGGTGCGACATGGTAGGCGAAGCTA  488

seq1  GGAAAGGCATGCGGGGACTGGGTTAAGGTCAAGGAATGGAGCTTAGAAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCATGCGGGGACTGGGTTAAGGTCAAGGAATGGAGCTTAGAAGT  538

seq1  AAGTGACAGAAGCTCTAAGAGAACTTGGGAGGCGGTTGGGGTTCAGGTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAGAAGCTCTAAGAGAACTTGGGAGGCGGTTGGGGTTCAGGTCT  588

seq1  GTGGGCAGAGTCCCCCCCGGGGGGGGGGGGCATGGAGCTGGTGGGCTAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGAGTCCCCCCCGGGGGGGGGGGGCATGGAGCTGGTGGGCTAAG  638

seq1  TTAGGACTCCAGGCAGGCAAAGTTTGAGGGGCCCTGGAATGGATACAGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTCCAGGCAGGCAAAGTTTGAGGGGCCCTGGAATGGATACAGAG  688

seq1  CCTAGGAGGTGATTCTTGGTATAAGTGAGGTTCAGGGTTCCTGGACAGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAGGTGATTCTTGGTATAAGTGAGGTTCAGGGTTCCTGGACAGAG  738

seq1  CAGAGCCCTTTTCAGAGTTCAGGTATGGGACATAGAGCATAGGAAGATAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCTTTTCAGAGTTCAGGTATGGGACATAGAGCATAGGAAGATAG  788

seq1  GGCCCTTATGATGGAGATTTATTTAGTTTTGTTTATTTTTATGCTTTGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTATGATGGAGATTTATTTAGTTTTGTTTATTTTTATGCTTTGTG  838

seq1  CATTGGTGTTTTGCCCGAATGTGTCTGTTGGACCACAAATGTTGCATGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGTTTTGCCCGAATGTGTCTGTTGGACCACAAATGTTGCATGGG  888

seq1  GGTTAGGAACCGAACTCCTGTCCTGTACAAAAGACAAGTGCTTTAACTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGAACCGAACTCCTGTCCTGTACAAAAGACAAGTGCTTTAACTGC  938

seq1  TGAGCCATCTCTAGGGAGATCTTGAGGTGTGGTGATGGAAATGAGCTCCG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCTAGGGAGATCTTGAGGTGTGGTGATGGAAATGAGCTCCG  988

seq1  TGTCAATCAGAGATGAAGCAAAGAAACAGAACAGAAGGAGAAAAATAGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATCAGAGATGAAGCAAAGAAACAGAACAGAAGGAGAAAAATAGCA  1038

seq1  ACAGTTTATCTGGAGGAGTTGGCCAGGCAGCTCCAGAATCCTCAGGGCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTATCTGGAGGAGTTGGCCAGGCAGCTCCAGAATCCTCAGGGCAG  1088

seq1  GCAGCCTGTTGGGGATCTCAGGTGCAAGTTGCCTGACCACAGGCAGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGTTGGGGATCTCAGGTGCAAGTTGCCTGACCACAGGCAGAATT  1138

seq1  C  1147
      |
seq2  C  1139

seq1: chr7_17275022_17275636
seq2: B6Ng01-327F04.g_66_680

seq1  GAATTCAGCCCGTTTTATTCTCTCAACTAAATGGCAGCTCCCAGATATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCGTTTTATTCTCTCAACTAAATGGCAGCTCCCAGATATGC  50

seq1  CTGCAGTTTCCTCAATGTTCACCCGGGGGAGGATCAGGACACAATCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTTCCTCAATGTTCACCCGGGGGAGGATCAGGACACAATCAACA  100

seq1  CTCAGAAAAGTATTTGCCCGAGCTAGCAATTTACCTTGCAGCCTGGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAAGTATTTGCCCGAGCTAGCAATTTACCTTGCAGCCTGGCTGC  150

seq1  CATCCCTGTCTCAGATGACTAAGAGGCCCCTTCCACGAGTCTGTGTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGTCTCAGATGACTAAGAGGCCCCTTCCACGAGTCTGTGTGACC  200

seq1  TCCTGGCTTCTTCCTATACCTCAGCACAGTGATGTTCCCGGGACCTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTTCTTCCTATACCTCAGCACAGTGATGTTCCCGGGACCTGTGC  250

seq1  AGTTCCTTCTCTGCTGGCATCTTCCATGAGTAAAGACAGGGCGACCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTCTCTGCTGGCATCTTCCATGAGTAAAGACAGGGCGACCACAA  300

seq1  GGGAATGGCTTCCTGGATAGGGGAGGGAGGGCATGGGCTGACTGCATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGCTTCCTGGATAGGGGAGGGAGGGCATGGGCTGACTGCATGCC  350

seq1  CAGCTCAGCCAACATGGGGAGTTAGAGTGCCTCCTAGAAACCTTCCGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGCCAACATGGGGAGTTAGAGTGCCTCCTAGAAACCTTCCGTAG  400

seq1  TAAGATGGAGCCACAGTCCTCTTCCAGGAGTAAGTGTCCTCTTCTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGAGCCACAGTCCTCTTCCAGGAGTAAGTGTCCTCTTCTTTAAA  450

seq1  CCCTGAATGTAAAACCCAGACACATCGTGTCTCTAGCGGCATATGTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATGTAAAACCCAGACACATCGTGTCTCTAGCGGCATATGTATCA  500

seq1  GAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTAC  550

seq1  AAACTTTATATGCCTCAGTACAGGGAAACGCCAGGGCCAAGAAGTGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATATGCCTCAGTACAGGGAAACGCCAGGGCCAAGAAGTGGGAG  600

seq1  TGGGTGGGTAGGAGA  615
      |||||||||||||||
seq2  TGGGTGGGTAGGAGA  615