BAC Information

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BAC

Clone NameB6Ng01-327M19
Chromosome7 (Build37)
Map Location 20,754,080 - 20,755,179
singlet/doubletsinglet
Overlap geneEG620537
Upstream geneEml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21
Downstream geneLOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327M19.bB6Ng01-327M19.g
ACCGA115241GA115242
length9781,100
definitionB6Ng01-327M19.b B6Ng01-327M19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgccggcaagatactagctcgggcaagagcccaggagaggtat
tgctgaatcctctagtagtactatgtccaattttctgaggaactgtcaga
ctgatttccagagtggttgtacaagcttgcaatcccaccaacagtggagg
agtattcctctttctccagcatcctcaccagcatctgctgtcccctaagc
tggaaaggaaccagatgtccctcagcagaggaatggatacagaaaatgtg
gtaaatttatacaatgtagtactactcagctattaaagacaatgaaaata
tgaaattcctaggcaaatggatggatctggagggtatcatcctgagtgag
gtaacccaatcacaaaagaatgcacattgatatgcactcactgataagtg
gattattagcccagaaacttagaatacccaagatacaatttgcaaaacac
atgaaactcaagaaggaagaccaaagtatggatacttcaccccttcttag
aatggggaacaaaatacccatgggaggagttacagagacaaagtttggag
ctgagacaaaagaatgaaccatccagagactgcctcaccaggggatccat
cccataatcagtcaccaaacacagacactattgcatatgcctgcaagatt
ttgctgaaaggaccatgatatagctatctctcgtgaggctatgccagtgc
ctggcaaacacagaagtgaatgctcacagtcagctattagatggaacaca
aggcccccaatggaggagctaggaaaggtacccaatgatctgaaggggtc
tgcaaccctataggtggaacaacaatatgaactaagcagtacccccagag
ctcgtgtctctagctgcatatgtatcagaagatggactagttggccatta
ttgggaagagaggcccctttggtattgcaaactttatatgccctagtaca
ggggaatgccagggccaagaagtgggag
gaattcaatacaattaggagagaggggaggcttcaattgggatgtaacta
aaccattaaaaataaaacaatatataaatgcagcataaaaaataattaat
tgaatttacttatgttatagtaacatgttaaaaataatgtgtatgcgaat
atcatgtaagattacacatattaatgaagttgtgtaattgagttcaggtg
tagaaaattaagttattggcttttgagaaaattttataccactcatccac
acaagcacacacacacaaaaacccaccacatatttctaataaagccagct
gtcttctgatcacactgatgaacatagtcttacatatgtgtcctccatgg
aaaaaagaatccaacttgctaaaacgtttcgtctattcatatttttcctg
accttaatttttgttctaaaatgtcctgtgccagagccttagctgtgtca
cctgcagcttccctccaaagttactaacacaatcactgttacaccctttg
gaagctgatgcttagtctgcattttacttgtttatatgttttctgtagga
acatgagggccccatccaccagataaaattcaacatctcacatacatgtt
acactgaatgctgttttctcctgagtactaatctaggacagagacatttc
tttgagataaaagcaaaatattaacctatttaagtttacctgcagacttc
caaaagaaataatgtttcatgttgacttcagaagacaattttcactgaag
aaaatagaaagagaattttaagcagaagtctatggttggaagaatcccac
cttctgagcctcagtcaggatgaatattttcatctgaaggccagctgcag
agcacagctcctttagaagcatatttcctagtgcctggattgaggaactt
ctctgtgtcactctttgcctgagaaagaatgcaatgaaattcggaatggt
tttttaattctccatgcaatgctgtgaagtaaccaacaaagtccaagttt
cagtctcataaaacaatagggcactgggacatgacatctcaagaagaagt
tattattgtgttcatctgtgcaatccgcacatttgtctgcatgttgtctt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20754080_20755179
seq2: B6Ng01-327M19.g_67_1166

seq1  GAATTCAATACAATTAGGAGAGAGGGGAGGCTTCAATTGGGATGTAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACAATTAGGAGAGAGGGGAGGCTTCAATTGGGATGTAACTA  50

seq1  AACCATTAAAAATAAAACAATATATAAATGCAGCATAAAAAATAATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTAAAAATAAAACAATATATAAATGCAGCATAAAAAATAATTAAT  100

seq1  TGAATTTACTTATGTTATAGTAACATGTTAAAAATAATGTGTATGCGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTACTTATGTTATAGTAACATGTTAAAAATAATGTGTATGCGAAT  150

seq1  ATCATGTAAGATTACACATATTAATGAAGTTGTGTAATTGAGTTCAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTAAGATTACACATATTAATGAAGTTGTGTAATTGAGTTCAGGTG  200

seq1  TAGAAAATTAAGTTATTGGCTTTTGAGAAAATTTTATACCACTCATCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTAAGTTATTGGCTTTTGAGAAAATTTTATACCACTCATCCAC  250

seq1  ACAAGCACACACACACAAAAACCCACCACATATTTCTAATAAAGCCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACACACACACAAAAACCCACCACATATTTCTAATAAAGCCAGCT  300

seq1  GTCTTCTGATCACACTGATGAACATAGTCTTACATATGTGTCCTCCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGATCACACTGATGAACATAGTCTTACATATGTGTCCTCCATGG  350

seq1  AAAAAAGAATCCAACTTGCTAAAACGTTTCGTCTATTCATATTTTTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATCCAACTTGCTAAAACGTTTCGTCTATTCATATTTTTCCTG  400

seq1  ACCTTAATTTTTGTTCTAAAATGTCCTGTGCCAGAGCCTTAGCTGTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAATTTTTGTTCTAAAATGTCCTGTGCCAGAGCCTTAGCTGTGTCA  450

seq1  CCTGCAGCTTCCCTCCAAAGTTACTAACACAATCACTGTTACACCCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCTTCCCTCCAAAGTTACTAACACAATCACTGTTACACCCTTTG  500

seq1  GAAGCTGATGCTTAGTCTGCATTTTACTTGTTTATATGTTTTCTGTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGATGCTTAGTCTGCATTTTACTTGTTTATATGTTTTCTGTAGGA  550

seq1  ACATGAGGGCCCCATCCACCAGATAAAATTCAACATCTCACATACATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGGCCCCATCCACCAGATAAAATTCAACATCTCACATACATGTT  600

seq1  ACACTGAATGCTGTTTTCTCCTGAGTACTAATCTAGGACAGAGACATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAATGCTGTTTTCTCCTGAGTACTAATCTAGGACAGAGACATTTC  650

seq1  TTTGAGATAAAAGCAAAATATTAACCTATTTAAGTTTACCTGCAGACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATAAAAGCAAAATATTAACCTATTTAAGTTTACCTGCAGACTTC  700

seq1  CAAAAGAAATAATGTTTCATGTTGACTTCAGAAGACAATTTTCACTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAATAATGTTTCATGTTGACTTCAGAAGACAATTTTCACTGAAG  750

seq1  AAAATAG-AAGAGAATTTTAAGCAGAAGTCTATGGTTGGAAGAATCCCAC  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAAGAGAATTTTAAGCAGAAGTCTATGGTTGGAAGAATCCCAC  800

seq1  CTTCTGAGCCTCAGTCAGGATGAATATTTTCATCTGAAGGCCAGCTGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGCCTCAGTCAGGATGAATATTTTCATCTGAAGGCCAGCTGCAG  850

seq1  AGCACAGCTCCTTTAGAAGCATATTTCCTAGTGCCTGGATTGAGGAACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCTCCTTTAGAAGCATATTTCCTAGTGCCTGGATTGAGGAACTT  900

seq1  CTCTGTGTCACTCTTTGCCTGAGAAAGAATGCAATGAAATTCGGAATGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCACTCTTTGCCTGAGAAAGAATGCAATGAAATTCGGAATGGT  950

seq1  TTTTT-ATTCTCCATGCAATGCTGTGAAGGTAACCCAACAAAGTCCAAGT  998
      ||||| |||||||||||||||||||||| |||| ||||||||||||||||
seq2  TTTTTAATTCTCCATGCAATGCTGTGAA-GTAA-CCAACAAAGTCCAAGT  998

seq1  TTCCAGTCTCATAAAACAATAGGGCACTGGGACATGACATCCTTCA--GA  1046
      || ||||||||||||||||||||||||||||||||||||||  |||   |
seq2  TT-CAGTCTCATAAAACAATAGGGCACTGGGACATGACATC--TCAAGAA  1045

seq1  GAGTTTATTATTGTG-TCATCTGTGGCATCCGCACATTTGTCTGCATGGT  1095
      ||  ||||||||||| |||||||||  ||||||||||||||||||||| |
seq2  GAAGTTATTATTGTGTTCATCTGTGCAATCCGCACATTTGTCTGCATGTT  1095

seq1  GTCTT  1100
      |||||
seq2  GTCTT  1100