BAC Information

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BAC

Clone NameB6Ng01-328N02
Chromosome7 (Build37)11 (Build37)
Map Location 87,372,484 - 87,373,65034,820,231 - 34,821,157
singlet/doubletsingletsinglet
Overlap geneCib1
Upstream geneAbhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b
Downstream geneD330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328N02.bB6Ng01-328N02.g
ACCGA115975GA115976
length1,1571,024
definitionB6Ng01-328N02.b B6Ng01-328N02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,372,484 - 87,373,650)(34,820,231 - 34,821,157)
sequence
gaattcacctagctagccttgcacaggcaccaagcctgcctttgccttct
gtgtgctgggattatagacctgtaccaccacagccaaaggttcctgtttg
aggagctggacatgtagctcagtagagtacttgcataacaggtttgaaac
tgttcaattcttggtaccacaaaactagacatcctagcactcaggaggta
gaggaaggaaaaccagaagttcaaaagtccaggctgtgtgtgctgatgca
caactttaatatcagtctcaaaaaaaaaaaaacaaaaaatagagtgggct
gggtcccctgtgtcctctgaaagaccatcctgaatcatgcccttgatacc
atcccagagtagatgggtactcagaatgcaggagcccctgtcacacctgg
caaagtctggtgagcgcgagatgacatgctggaactcggaaagattgatg
gtcccatccctgtcaatgtctgactcttccaggatctagggaagagaggg
ctttatgcgtcagctccaacccttcccacccgacaccccaacctagccag
aagctgcagctcacattgtcaatcagctgcttcatctcagaagcactgag
ccgagtgtcctcgccctctcccgtgaggcaattcacaagctggctcaggt
cttctctgtccagggttccatcgtcatcaaagtctaggcagcagacacag
ggagcaactaggatatgctcaagaggcagtctgcaggcacacacctaccc
tctttcctgtgtgggaaggagtgggggcccagccattctcacagtgctta
ccaaagatgcggaaggcatagtgtgacttgatgtctggggttgctgtgtc
actgaagacactcaagaggtccaggaagtcctcaaagctcaggctgtctc
tggtaggtgatgtggagaagaccatgcagattcgctccttgaaagggtta
gcctgtgtaagaaagccttctgtgaacatcacagggcatgacctgagtta
caactcagccagctcaactggaaagtcttcttgagcaagggtcttcacaa
accatgctgtctcacttctcaatctctgctctacctccagtgctgatgca
agtatgcaccaacatgcctgattcctctgaacttcaaggaacgctcaatt
acaatag
gaattcagctgccatgataggtcaggtcagacagacctaggcacgtagaa
attcagtatatgatttcaggtgcaggggaggggaggtggatgatacctct
cttctctcagtgagcagcaggactgatgtgctcgctaactggcttcactc
ctcgttcttgctcaccctgtgcttctcatagtgaagaattgcctcttgtc
ttttgcatcctgcttcctccttacaggagtacccagggtaagcctcagtg
tggtcagcacggactgccaaggaagtaacaccttcggggaatgaaagagc
gggaataattccacccaccgaagtcaataaaagaagcccccgggacaaaa
ggcggaaacccgctgtttcccaatgaccttgtgctaaacttagccactta
acttctatttgagcaagggaaagtacacaggcgcaatctgtaagcaagcc
ggcctttcccacggagctcttctaaagctctcatagtgtaaatgaccaga
tctcagatagtttaataactgctgccagagcaaaaaaaggacggccctct
gcagaattccaccttgtgcaaggtcgcagagagtccgtgggtgagcaggg
actggggtccacggtgctccctgccagcttctcctcagccagggatcaat
gcctgagcagagagcagactgaccctgatttgcatttatgaaagtcacct
gtctggcgctggccctgaggcagagatcaaagctggggagggtagccagg
agcagagaggaaatcaatattgatgcaatgagatgcatggcaactctcct
ccacccaccttgtcagtaataacagcgaaacctgggaaatgaccgggaaa
ccgtgatccttcccacggctcagattatgggtcccccgtttgccctacaa
gatgggctgtgtgcagcttttgcccaaaaaaagaaaatgcaggaatggga
aagactgggaaatgatcagatggtattccctagtccctccggcaccttct
tcatgaatagggttggaacctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_87372484_87373650
seq2: B6Ng01-328N02.b_47_1203

seq1  GAATTCACCTAGCTAGCCTTGCACAGGCACCAAGCCTGCCTTTGCCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAGCTAGCCTTGCACAGGCACCAAGCCTGCCTTTGCCTTCT  50

seq1  GTGTGCTGGGATTATAGACCTGTACCACCACAGCCAAAGGTTCCTGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGGGATTATAGACCTGTACCACCACAGCCAAAGGTTCCTGTTTG  100

seq1  AGGAGCTGGACATGTAGCTCAGTAGAGTACTTGCATAACAGGTTTGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGGACATGTAGCTCAGTAGAGTACTTGCATAACAGGTTTGAAAC  150

seq1  TGTTCAATTCTTGGTACCACAAAACTAGACATCCTAGCACTCAGGAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATTCTTGGTACCACAAAACTAGACATCCTAGCACTCAGGAGGTA  200

seq1  GAGGAAGGAAAACCAGAAGTTCAAAAGTCCAGGCTGTGTGTGCTGATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAAAACCAGAAGTTCAAAAGTCCAGGCTGTGTGTGCTGATGCA  250

seq1  CAACTTTAATATCAGTCTCAAAAAAAAAAAAACAAAAAATAGAGTGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTAATATCAGTCTCAAAAAAAAAAAAACAAAAAATAGAGTGGGCT  300

seq1  GGGTCCCCTGTGTCCTCTGAAAGACCATCCTGAATCATGCCCTTGATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCCTGTGTCCTCTGAAAGACCATCCTGAATCATGCCCTTGATACC  350

seq1  ATCCCAGAGTAGATGGGTACTCAGAATGCAGGAGCCCCTGTCACACCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAGTAGATGGGTACTCAGAATGCAGGAGCCCCTGTCACACCTGG  400

seq1  CAAAGTCTGGTGAGCGCGAGATGACATGCTGGAACTCGGAAAGATTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTGGTGAGCGCGAGATGACATGCTGGAACTCGGAAAGATTGATG  450

seq1  GTCCCATCCCTGTCAATGTCTGACTCTTCCAGGATCTAGGGAAGAGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATCCCTGTCAATGTCTGACTCTTCCAGGATCTAGGGAAGAGAGGG  500

seq1  CTTTATGCGTCAGCTCCAACCCTTCCCACCCGACACCCCAACCTAGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGCGTCAGCTCCAACCCTTCCCACCCGACACCCCAACCTAGCCAG  550

seq1  AAGCTGCAGCTCACATTGTCAATCAGCTGCTTCATCTCAGAAGCACTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCAGCTCACATTGTCAATCAGCTGCTTCATCTCAGAAGCACTGAG  600

seq1  CCGAGTGTCCTCGCCCTCTCCCGTGAGGCAATTCACAAGCTGGCTCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGTCCTCGCCCTCTCCCGTGAGGCAATTCACAAGCTGGCTCAGGT  650

seq1  CTTCTCTGTCCAGGGTTCCATCGTCATCAAAGTCTAGGCAGCAGACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTCCAGGGTTCCATCGTCATCAAAGTCTAGGCAGCAGACACAG  700

seq1  GGAGCAACTAGGATATGCTCAAGAGGCAGTCTGCAGGCACACACCTACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAACTAGGATATGCTCAAGAGGCAGTCTGCAGGCACACACCTACCC  750

seq1  TCTTTCCTGTGTGGGAAGGAGT-GGGGCCCAGCCATTCTCACAGTGCTTA  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTTTCCTGTGTGGGAAGGAGTGGGGGCCCAGCCATTCTCACAGTGCTTA  800

seq1  CCAAAGATGCGGAAGGCATAGTGTGACTTGATGTCTGGGGTTGCTGTGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATGCGGAAGGCATAGTGTGACTTGATGTCTGGGGTTGCTGTGTC  850

seq1  ACTGAAGACACTCAGGAGGTCCAGGAAGTCCTCAAAGCTCAGGCTGTCTC  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTGAAGACACTCAAGAGGTCCAGGAAGTCCTCAAAGCTCAGGCTGTCTC  900

seq1  TGGTAGGTGATGTGGAGAAGACCATGCAGATTCGCTCCTTGAAAGGGTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGTGATGTGGAGAAGACCATGCAGATTCGCTCCTTGAAAGGGTTA  950

seq1  GCCTGTGTAAGAAAGCCTTCTGTGAACATCACAGGGCATGACCTGGGTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCTGTGTAAGAAAGCCTTCTGTGAACATCACAGGGCATGACCTGAGTTA  1000

seq1  CAAACTCAGCCAGCTCAACTGGAAAGTCCTTCTGAGGCAGGGTC-TCACA  1048
      | |||||||||||||||||||||||||| |  ||||  |||||| |||||
seq2  C-AACTCAGCCAGCTCAACTGGAAAGTCTTCTTGAGCAAGGGTCTTCACA  1049

seq1  AACCCATGCTGGCCTCCAACTCCTCATCCTCCTGCCTCTACCTCCCAGGT  1098
      || ||||||||   ||  ||| ||||  || ||| ||||||||||   ||
seq2  AA-CCATGCTG---TCTCACTTCTCAATCT-CTG-CTCTACCTCC--AGT  1091

seq1  GCTGGATTGCAGGTATGCACCACCATGCCTGATTCCCTTCTGGAAACTCG  1148
      ||||   |||| |||||||||| |||||||||||||  ||| |||  || 
seq2  GCTG--ATGCAAGTATGCACCAACATGCCTGATTCC--TCT-GAACTTCA  1136

seq1  AGGAA-GCTC-ATTACAATAG  1167
      ||||| |||| ||||||||||
seq2  AGGAACGCTCAATTACAATAG  1157

seq1: chr11_34820231_34821157
seq2: B6Ng01-328N02.g_157_1091 (reverse)

seq1  AAAAGGCTCCAACCCTTCTTCTTGAAG-AGGTGGCGGAGGG-CTTGGG-A  47
      |||||| |||||||| | ||| ||||| ||||| ||||||| || ||| |
seq2  AAAAGGTTCCAACCC-TATTCATGAAGAAGGTGCCGGAGGGACTAGGGAA  49

seq1  TACCATCTGATCATTTCCCAGTCTTTCCCA-TCCTGCA-TTTCCTTTTCT  95
      |||||||||||||||||||||||||||||| ||||||| |||| |||| |
seq2  TACCATCTGATCATTTCCCAGTCTTTCCCATTCCTGCATTTTCTTTTTTT  99

seq1  GGGC-AAAGCTGCACACAGCCCATCTGGTAGGGCAAAC-GGGGAGCCATA  143
      |||| ||||||||||||||||||||| ||||||||||| ||||| |||||
seq2  GGGCAAAAGCTGCACACAGCCCATCTTGTAGGGCAAACGGGGGACCCATA  149

seq1  ATCTGAGCCCGTGGAAGGATCACGG-TTCCCGGTCATTTCCCAGGTTTCG  192
      |||||||||   ||||||||||||| ||||||||||||||||||||||||
seq2  ATCTGAGCCGTGGGAAGGATCACGGTTTCCCGGTCATTTCCCAGGTTTCG  199

seq1  CTGTTATTACTGACAAGGTGGGTGGAGGAGAGTTGCCATGCATCTCATTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTACTGACAAGGTGGGTGGAGGAGAGTTGCCATGCATCTCATTG  249

seq1  CATCAATATTTGATTTCCTCTCTGCTCCTGGCTACCCT-CCCAGCTTTGA  291
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  CATCAATA-TTGATTTCCTCTCTGCTCCTGGCTACCCTCCCCAGCTTTGA  298

seq1  TCTCTGCCTCAGGGCCAGCGCCAGACAGGTGACTTTCAT-AATGCAAATC  340
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTCTGCCTCAGGGCCAGCGCCAGACAGGTGACTTTCATAAATGCAAATC  348

seq1  AGGGTCAGTCTGCTCTCTGCTCAGGCATTGATCCCTGGCTGAGGAGAAGC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAGTCTGCTCTCTGCTCAGGCATTGATCCCTGGCTGAGGAGAAGC  398

seq1  TGGCAGGGAGCACCGTGGACCCCAGTCCCTGCTCACCCACGGACTCTCTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGAGCACCGTGGACCCCAGTCCCTGCTCACCCACGGACTCTCTG  448

seq1  CGACCTTGCACAAGGTGGAATTCTGCAGAGGGCCGTCCTTTTTTTGCTCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTGCACAAGGTGGAATTCTGCAGAGGGCCGTCCTTTTTTTGCTCT  498

seq1  GGCAGCAGTTATTAAACTATCTGAGATCTGGTCATTTACACTATGAGAGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGTTATTAAACTATCTGAGATCTGGTCATTTACACTATGAGAGC  548

seq1  TTTAGAAGAGCTCCGTGGGAAAGGCCGGCTTGCTTACAGATTGCGCCTGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGAGCTCCGTGGGAAAGGCCGGCTTGCTTACAGATTGCGCCTGT  598

seq1  GTACTTTCCCTTGCTCAAATAGAAGTTAAGTGGCTAAGTTTAGCACAAGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTCCCTTGCTCAAATAGAAGTTAAGTGGCTAAGTTTAGCACAAGG  648

seq1  TCATTGGGAAACAGCGGGTTTCCGCCTTTTGTCCCGGGGGCTTCTTTTAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGGAAACAGCGGGTTTCCGCCTTTTGTCCCGGGGGCTTCTTTTAT  698

seq1  TGACTTCGGTGGGTGGAATTATTCCCGCTCTTTCATTCCCCGAAGGTGTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCGGTGGGTGGAATTATTCCCGCTCTTTCATTCCCCGAAGGTGTT  748

seq1  ACTTCCTTGGCAGTCCGTGCTGACCACACTGAGGCTTACCCTGGGTACTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTGGCAGTCCGTGCTGACCACACTGAGGCTTACCCTGGGTACTC  798

seq1  CTGTAAGGAGGAAGCAGGATGCAAAAGACAAGAGGCAATTCTTCACTATG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGGAGGAAGCAGGATGCAAAAGACAAGAGGCAATTCTTCACTATG  848

seq1  AGAAGCACAGGGTGAGCAAGAACGAGGAGTGAAGCCAGTTAGCGAGCACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACAGGGTGAGCAAGAACGAGGAGTGAAGCCAGTTAGCGAGCACA  898

seq1  TCAGTCCTGCTGCTCACTGAGAGAAGAGAGGTATCAT  927
      |||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTGCTGCTCACTGAGAGAAGAGAGGTATCAT  935