BAC Information

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BAC

Clone NameB6Ng01-329A01
Chromosome5 (Build37)7 (Build37)
Map Location 89,414,036 - 89,414,16812,091,961 - 12,092,289
singlet/doubletsingletsinglet
Overlap geneSlc4a4
Upstream geneSmr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
Downstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329A01.bB6Ng01-329A01.g
ACCGA116102GA116103
length969330
definitionB6Ng01-329A01.b B6Ng01-329A01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,414,036 - 89,414,168)(12,091,961 - 12,092,289)
sequence
gaattcatttcctttcgcccagcttctcttttctataaacccagacattt
tcaccatgtgctcttgacttcttgcttcttttcttggtccttctcttgat
tcttctctgtttttttccccattaattaatctatttattcacattacatc
ccaagcaaacccagccctctcatccaaattcctacccctcctgtatatga
ctcttacccccatccgcactcccatttacatctgagaatggggaggtcct
ccctggctaccaacccatcctggcaaatcaagtcactgcaaacctagata
cctactttcccacttaggtcaaacaaggtagcttaggaaaacaggatcca
ctggaaggcaacagagtaagagtatgtccctgctcaagtttttatggaac
tcacatgaagaccaaacttcacaactgttacttatatgcagggcctatgt
ctggtcttgtatggtctttggttgggggttcagtctctggaagcctccag
gggcccaagatagttttctttgttgttcttcttggggagtccctatcccc
ttctggtccttaatccttccctcaactgtttctcaagattccctgagctc
agactgtttggctgtgggtctctgcatcaatttttgtcagttgctggaca
gaggctctcaaaggaaagtaatgttctgctcctgtcttcaagtacaacag
agtatcattaacaatgtcagggagtatttcttactcatgggaaatgtctg
aatttgatcagtccttggttggccattctctcacactttgctccatcttt
aaccttgcaattcttataggcaggacatattttggggtgaagtttttatg
tatgggttggtgtcctcattccttcactgggtgtactgcctggctaccag
agatggtcactttaaagcttcatatccccactgcttgagtcacagcgaga
gtgtccctcatagactgct
cagaccaacctaggctacagtgagacaaggtctcaaaaaacaaaaaaaaa
caaacaaaaaaacaaacaataacaacagcaataaaaacaaaaactagaag
gctatagatttttgtttttggcatagtgactactcttaaaatatatctct
tagctagctggctttagggcacacatataatgacagcacctgggtggcag
aggtgtgtgcatattgggagtgcagggaggaggggaggagtgtgtctctg
tgagttcaaaactatccagaagggaatacaatgggagaccagtgtgtttg
cttgttattcagttttgtggtttgtttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_89414036_89414168
seq2: B6Ng01-329A01.b_154_334

seq1  TTTTTTTCCCCATTAATTAATTTATTTATTCACGTTACATCCCAA--TAT  48
      ||||||||||||||||||||| ||||||||||| |||||||||||   | 
seq2  TTTTTTTCCCCATTAATTAATCTATTTATTCACATTACATCCCAAGCAAA  50

seq1  CAGTTTCCCCTCA--CACAT--CTCCCCCT-----------AACTTCCCC  83
      |     || ||||  || ||  || |||||             ||| |||
seq2  CCCAGCCCTCTCATCCAAATTCCTACCCCTCCTGTATATGACTCTTACCC  100

seq1  ---------CTCTCCTTCTCCTCTGAG-------------GCCCT-----  106
               ||| | ||  | ||||||              ||||     
seq2  CCATCCGCACTCCCATTTACATCTGAGAATGGGGAGGTCCTCCCTGGCTA  150

seq1  ----CCCACCCTGGAACATCAAGTCACTGCA  133
          |||| ||||| | ||||||||||||||
seq2  CCAACCCATCCTGGCAAATCAAGTCACTGCA  181

seq1: chr7_12091961_12092289
seq2: B6Ng01-329A01.g_74_403 (reverse)

seq1  AAAAAACAAACCAC-CACCTGAAAAACAAGCAAACACACTGGTCTCCCAT  49
      ||||||||||||||  | ||||| ||||||||||||||||||||||||||
seq2  AAAAAACAAACCACAAAACTGAATAACAAGCAAACACACTGGTCTCCCAT  50

seq1  TGTATTCCCTTCTGGATAGTTTTGAACTCACAGAGACACACTCCTCCCCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCCTTCTGGATAGTTTTGAACTCACAGAGACACACTCCTCCCCT  100

seq1  CCTCCCTGCACTCCCAATATGCACACACCTCTGCCACCCAGGTGCTGTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGCACTCCCAATATGCACACACCTCTGCCACCCAGGTGCTGTCA  150

seq1  TTATATGTGTGCCCTAAAGCCAGCTAGCTAAGAGATATATTTTAAGAGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTGTGCCCTAAAGCCAGCTAGCTAAGAGATATATTTTAAGAGTA  200

seq1  GTCACTATGCCAAAAACAAAAATCTATAGCCTTCTAGTTTTTGTTTTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTATGCCAAAAACAAAAATCTATAGCCTTCTAGTTTTTGTTTTTAT  250

seq1  TGCTGTTGTTATTGTTTGTTTTTTTGTTTGTTTTTTTTTGTTTTTTGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGTTATTGTTTGTTTTTTTGTTTGTTTTTTTTTGTTTTTTGAGA  300

seq1  CCTTGTCTCACTGTAGCCTAGGTTGGTCTG  329
      ||||||||||||||||||||||||||||||
seq2  CCTTGTCTCACTGTAGCCTAGGTTGGTCTG  330