BAC Information

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BAC

Clone NameB6Ng01-330G01
Chromosome7 (Build37)
Map Location 104,530,320 - 104,657,867
singlet/doubletdoublet
Overlap geneAlg8, Ndufc2, Thrsp, Kctd14, Ints4
Upstream geneOdz4, LOC666858, Nars2, Gab2, LOC100040457, Usp35, EG622320
Downstream gene1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330G01.bB6Ng01-330G01.g
ACCGA117070GA117071
length1,1231,018
definitionB6Ng01-330G01.b B6Ng01-330G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,656,751 - 104,657,867)(104,530,320 - 104,531,316)
sequence
gaattcctggaaatggtattgccttatttcagtatccaactacatgaaaa
tacatttagatgtcagatggtaaataactgaccactatcaagactgaaca
aagacttggaagaatgaatttacttgcctcaaagtcaataaaggaagaga
aaacatcagccccacaccagcaacgcaggctagcatcacacaatgtgtgc
ttgtgggacatgctgctccaagaagacaggtctcagagcgggctgcagtg
atctcgtcaccaattcatgccaggcctgctaggaagtaacaggccaactg
agcaaaacctcaactctcaactgaacttttctaggttgaaaacaacacaa
agagaagggaaaggaaacggaaaaggaggaagaaagagcgaaacgggaag
atacacataatggggaaggggttcagagggacaccgtagaaaaactccag
catcataaagcttatgtggaaccagaaaagcttgcaaggaatgactggac
aggtgtggtgatgcacatcttcaatcccagcactgaggaggccgaggcag
ggagatctctgaattcaagactgacctagtctatatagcaagttctaggc
cagccagggatatacagctagactccattagacagactggcaggcaggca
ggcagacagacagacagacagacagacagatggataatatgacacaacac
tttccccaaaggccaaaggaagatagaagaaagactttctggtcacaaac
acttgaatttaaatcttactatctaagtacctaaattagtttttgtttgt
ttgttttttttggttttatgagacagggtttctctgtgtagcctttggct
gtcctggaactcactctgtagaccaggctggcctcgaactcagagatccg
cctgcctctgcctcctgagtgctgggattaaagggcgagcgccaccacgc
cagcttctaaattagtattattaatatgtctcttattactagtgcttact
aataaaaagatcaagtattcatgccagttactttatgttttacagaatct
catttaatcttacaggctagaaaattgtttatttattatcatcccggacc
tttatagtaagtgctgaattgtg
gaattccttacagaggctcctggtgccagtgaagttgtggattccaggtg
ccgtgtttcattctgtttttacagaagatcccctaaggcttagttacagc
tcttaaagtgtagctactgggctggagagaggtctcagcagttaatagca
ctggttgctctctcagaggacctgttttaattcccagcacccacatggca
gcccacaaccgtctgtaacttcagttccagagcatcggatgcacctcctc
tggcttctgcagtctttgcacacatttgcacaaacatccaagcaaaacac
taataacaatgctttaaaagttaaaattttagctggatatggtaaaacaa
aacatggtagtcttagcactcaggaaactctgtgacagaaaaattatttc
aactcaggagtttgagaccaacctgaataacatagcaaaacaccagggct
ttttgttgttttatgttgttttaaggtttctacttttaaagtaggtgtgt
tttatcttgtttttttttttctttttgataataatattagctacacagaa
atgttacttgaatagttgtgagttctcgtcagtttcccccaagtgctacc
ttaaacaactgttcaccaaggctaaaaaactagcattggtgtatttgaat
ttcatcagcttttcaactaatatcttccttctgttctaggatccactcca
ggataatacattgcatttcacctgccgtgaatttaaagtgatgcattccc
ctttctctctcctagaaaaggcacattgaatgggcgttgctcttttgctg
tcctccctccatctcaagcacatttacctattatgtggcaccagcctatt
gggtgtctaatctgctgcggtcctacttgcttcactgcaagtaaaccatg
gcaagtcttaagcagttgatgcctttacagttgttaggaatgcacagcgg
ggtgttccttcatgttcttattcttaataaccttctcatcattccacaag
gatcagagtacacccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104656751_104657867
seq2: B6Ng01-330G01.b_47_1169 (reverse)

seq1  CACATTTCAGCA-TTTCTATAAAG--TCGGGATGATAAT-AATAAACATT  46
      |||| ||||||| || ||||||||   |||||||||||| |||||||| |
seq2  CACAATTCAGCACTTACTATAAAGGTCCGGGATGATAATAAATAAACAAT  50

seq1  TTTCTTAGCTGTAAAAATTAAATGAGATTCTGT-ATACATAAAGTACTTG  95
      |||||   |||| || ||||||||||||||||| | ||||||||||  ||
seq2  TTTCTAGCCTGT-AAGATTAAATGAGATTCTGTAAAACATAAAGTAACTG  99

seq1  GCATG-ATACTTGATCTTTTTA-TAGTAAGCACTTAGTAATAAAGAGACA  143
      ||||| |||||||||||||||| |||||||||| ||||||| ||||||||
seq2  GCATGAATACTTGATCTTTTTATTAGTAAGCAC-TAGTAAT-AAGAGACA  147

seq1  TATTAATAATACTAATTTAGAAGCTGGGCGTGGTGGCGCTCG-CCTTTAA  192
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  TATTAATAATACTAATTTAGAAGCT-GGCGTGGTGGCGCTCGCCCTTTAA  196

seq1  TCCCAGCACTCAGGAGGCAGAGGCAGGCGGATCTCTGAGTTCGAGGCCAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTCAGGAGGCAGAGGCAGGCGGATCTCTGAGTTCGAGGCCAG  246

seq1  CCTGGTCTACAGAGTGAGTTCCAGGACAGCC-AAGGCTACACAGAGAAAC  291
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAAGGCTACACAGAGAAAC  296

seq1  CCTGTCTCATAAAACC-AAAAAAACAAACAAACAAAAACTAATTTAGGTA  340
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTGTCTCATAAAACCAAAAAAAACAAACAAACAAAAACTAATTTAGGTA  346

seq1  CTTAGATAGTAAGATTTAAATTCAAGTGTTTGTGACCAGAAAGTCTTTCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATAGTAAGATTTAAATTCAAGTGTTTGTGACCAGAAAGTCTTTCT  396

seq1  TCTATCTTCCTTTGGCCTTTGGGGAAAGTGTTGTGTCATATTATCCATCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTCCTTTGGCCTTTGGGGAAAGTGTTGTGTCATATTATCCATCT  446

seq1  GTCTGTCTGTCTGTCTGTCTGTCTGCCTGCCTGCCTGCCAGTCTGTCTAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGTCTGTCTGTCTGTCTGCCTGCCTGCCTGCCAGTCTGTCTAA  496

seq1  TGGAGTCTAGCTGTATATCCCTGGCTGGCCTAGAACTTGCTATATAGACT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTAGCTGTATATCCCTGGCTGGCCTAGAACTTGCTATATAGACT  546

seq1  AGGTCAGTCTTGAATTCAGAGATCTCCCTGCCTCGGCCTCCTCAGTGCTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTCTTGAATTCAGAGATCTCCCTGCCTCGGCCTCCTCAGTGCTG  596

seq1  GGATTGAAGATGTGCATCACCACACCTGTCCAGTCATTCCTTGCAAGCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAAGATGTGCATCACCACACCTGTCCAGTCATTCCTTGCAAGCTT  646

seq1  TTCTGGTTCCACATAAGCTTTATGATGCTGGAGTTTTTCTACGGTGTCCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTCCACATAAGCTTTATGATGCTGGAGTTTTTCTACGGTGTCCC  696

seq1  TCTGAACCCCTTCCCCATTATGTGTATCTTCCCGTTTCGCTCTTTCTTCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCCCTTCCCCATTATGTGTATCTTCCCGTTTCGCTCTTTCTTCC  746

seq1  TCCTTTTCCGTTTCCTTTCCCTTCTCTTTGTGTTGTTTTCAACCTAGAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCCGTTTCCTTTCCCTTCTCTTTGTGTTGTTTTCAACCTAGAAA  796

seq1  AGTTCAGTTGAGAGTTGAGGTTTTGCTCAGTTGGCCTGTTACTTCCTAGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTTGAGAGTTGAGGTTTTGCTCAGTTGGCCTGTTACTTCCTAGC  846

seq1  AGGCCTGGCATGAATTGGTGACGAGATCACTGCAGCCCGCTCTGAGACCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGCATGAATTGGTGACGAGATCACTGCAGCCCGCTCTGAGACCT  896

seq1  GTCTTCTTGGAGCAGCATGTCCCACAAGCACACATTGTGTGATGCTAGCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTGGAGCAGCATGTCCCACAAGCACACATTGTGTGATGCTAGCC  946

seq1  TGCGTTGCTGGTGTGGGGCTGATGTTTTCTCTTCCTTTATTGACTTTGAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTGCTGGTGTGGGGCTGATGTTTTCTCTTCCTTTATTGACTTTGAG  996

seq1  GCAAGTAAATTCATTCTTCCAAGTCTTTGTTCAGTCTTGATAGTGGTCAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAAATTCATTCTTCCAAGTCTTTGTTCAGTCTTGATAGTGGTCAG  1046

seq1  TTATTTACCATCTGACATCTAAATGTATTTTCATGTAGTTGGATACTGAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACCATCTGACATCTAAATGTATTTTCATGTAGTTGGATACTGAA  1096

seq1  ATAAGGCAATACCATTTCCAGGAATTC  1117
      |||||||||||||||||||||||||||
seq2  ATAAGGCAATACCATTTCCAGGAATTC  1123

seq1: chr7_104530320_104531316
seq2: B6Ng01-330G01.g_67_1084

seq1  GAATTCCTTACAGAGGCTCCTGGTGCCAGTGAAGTTGTGGATTCCAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACAGAGGCTCCTGGTGCCAGTGAAGTTGTGGATTCCAGGTG  50

seq1  CCGTGTTTCATTCTGTTTTTACAGAAGATCCCCTAAGGCTTAGTTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTTTCATTCTGTTTTTACAGAAGATCCCCTAAGGCTTAGTTACAGC  100

seq1  TCTTAAAGTGTAGCTACTGGGCTGGAGAGAGGTCTCAGCAGTTAATAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGTGTAGCTACTGGGCTGGAGAGAGGTCTCAGCAGTTAATAGCA  150

seq1  CTGGTTGCTCTCTCAGAGGACCTGTTTTAATTCCCAGCACCCACATGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGCTCTCTCAGAGGACCTGTTTTAATTCCCAGCACCCACATGGCA  200

seq1  GCCCACAACCGTCTGTAACTTCAGTTCCAGAGCATCGGATGCACCTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAACCGTCTGTAACTTCAGTTCCAGAGCATCGGATGCACCTCCTC  250

seq1  TGGCTTCTGCAGTCTTTGCACACATTTGCACAAACATCCAAGCAAAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGCAGTCTTTGCACACATTTGCACAAACATCCAAGCAAAACAC  300

seq1  TAATAACAATGCTTTAAAAGTTAAAATTTTAGCTGGATATGGTAAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAATGCTTTAAAAGTTAAAATTTTAGCTGGATATGGTAAAACAA  350

seq1  AACATGGTAGTCTTAGCACTCAGGAAACTCTGTGACAGAAAAATTATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTAGTCTTAGCACTCAGGAAACTCTGTGACAGAAAAATTATTTC  400

seq1  AACTCAGGAGTTTGAGACCAACCTGAATAACATAGCAAAACACCAGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGAGTTTGAGACCAACCTGAATAACATAGCAAAACACCAGGGCT  450

seq1  TTTTGTTGTTTTATGTTGTTTTAAGGTTTCTACTTTTAAAGTAGGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTTTATGTTGTTTTAAGGTTTCTACTTTTAAAGTAGGTGTGT  500

seq1  TTTATCTTGTTTTTTTTTTTCTTTTTGATAATAATATTAGCTACACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTGTTTTTTTTTTTCTTTTTGATAATAATATTAGCTACACAGAA  550

seq1  ATGTTACTTGAATAGTTGTGAGTTCTCGTCAGTTTCCCCCAAGTGCTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACTTGAATAGTTGTGAGTTCTCGTCAGTTTCCCCCAAGTGCTACC  600

seq1  TTAAACAACTGTTCACCAAGGCTAAAAAACTAGCATTGGTGTATTTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAACTGTTCACCAAGGCTAAAAAACTAGCATTGGTGTATTTGAAT  650

seq1  TTCATCAGCTTTTCAACTAATATCTTCCTTCTGTTCTAGGATCCACTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGCTTTTCAACTAATATCTTCCTTCTGTTCTAGGATCCACTCCA  700

seq1  GGATAATACATTGCATTTCACCTGCCGTGAATTTAAAGTGATGCATTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATACATTGCATTTCACCTGCCGTGAATTTAAAGTGATGCATTCCC  750

seq1  C-TTCTCTCTCCTAGAAAAGGCACATTGAAGGGGCGTTGCTC-TTTGCTG  798
      | |||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  CTTTCTCTCTCCTAGAAAAGGCACATTGAATGGGCGTTGCTCTTTTGCTG  800

seq1  TCCT-CCTCCATCTCAAGCACATCTACCTA-TATGTGGCACCAGCCTAT-  845
      |||| |||||||||||||||||| |||||| |||||||||||||||||| 
seq2  TCCTCCCTCCATCTCAAGCACATTTACCTATTATGTGGCACCAGCCTATT  850

seq1  -GGTGTCT-ATCTGCTGCGGTCCTAC-TGCTTCACTGCAAGTAAACCA-G  891
       ||||||| ||||||||||||||||| ||||||||||||||||||||| |
seq2  GGGTGTCTAATCTGCTGCGGTCCTACTTGCTTCACTGCAAGTAAACCATG  900

seq1  GCAAGTCTT-AGCAG-TGAGGC--TTACAG-TGTTAGGAA-GCACAGC-G  934
      ||||||||| ||||| ||| ||  |||||| ||||||||| ||||||| |
seq2  GCAAGTCTTAAGCAGTTGATGCCTTTACAGTTGTTAGGAATGCACAGCGG  950

seq1  GGTG-TCCCTCAGGTCCTAAT--CTAAAAACCCTC-CATCA-TCCACAAA  979
      |||| ||| ||| || || ||   ||| |||| || ||||| ||||||| 
seq2  GGTGTTCCTTCATGTTCTTATTCTTAATAACCTTCTCATCATTCCACAAG  1000

seq1  GATCAGAGTACACCCAGG  997
      ||||||||||||||||||
seq2  GATCAGAGTACACCCAGG  1018