BAC Information

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BAC

Clone NameB6Ng01-330K05
Chromosome7 (Build37)
Map Location 11,429,232 - 11,430,510
singlet/doubletsinglet
Overlap geneLOC236479
Upstream gene2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237
Downstream geneEG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330K05.bB6Ng01-330K05.g
ACCGA117243GA117244
length1,2541,161
definitionB6Ng01-330K05.b B6Ng01-330K05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgatcatgggcccactgtcgcacttctctggcagtgaaatga
gttccttggtcagaagcaatactgtgtagaataccatgtatagattcagt
agtagctgtgaatgaaagtccaaggatctagcagttactcagtctcacac
accaagcaggctaaggagcaagagcaagactcccttctcccaatgtcctt
atattgtctccaacagaaggtatagcccagattaaaggcgtgttccacca
cacctttaatcccagattaccttgaagtcagagatttagtcttctggaat
tcatagccactatgcctcaagatctccataccaagatccagatcagaatc
ttctatctccaagcctctagataagggtcactggtgggccttccaattct
ggattgtagttcattccaaatatagtcaagttgacaaccaggaatagcca
ctacaggtggggacactttaaaaatcagcacaccactagcccacagactg
caaagaattctcactgccaatggcttggccaagctaacccacccccaaaa
aacaaaaacaaaaaacaaaaaaaaatcaaaataatgtaaaattttaaaac
tttttttttcatataagctattcaagatttctgtagcactgactgataca
aagcacaatgagatggcactttagagacctcagcttcaggaaagggcgat
gagatgatgttcatgtggctaaatcagtggcacaaacacaattttctttc
cctgtctacggtgggggcaggtgacctctaagaggtcagcacaacactaa
aggggcggcatgacccatctttgaacagttaggaaagggatagagctgcg
acaagtttggtctcagggctggggctaaatggtagcacgtttgcctaaca
ttcatgaggcatgggaggtggggcttctcagatttctcactgtcctattt
ggtcacatctgatggaaaagtacaaataaaatacggtaaagttgttcaag
aaaccaaagctgaaacttcacagcccggacagcttttgttttgctgactc
tagatcttcctgttgtctggctaagactgtgcagagcactggagcctctc
ccacagaaggagcctgcctagctctgcttgctcctagatgcagcccaatt
ctgggttctcctccatgcagaacgtatctcaataggttatggtctgccaa
gacagcgatgctggatgttcaaatgttgcttagaaccagaaagtatttca
caaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagaa
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atttatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggttacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccctaaacc
taggatttccaagatataaggtacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacactcatggaaggagttacagagacaaagtttggagctgagatga
aaggatagaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcataccctagcaagattttattgaaa
ggacccagatgtagctatctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagacccaggagctaagggatctgcaccctatag
tgaacaacattatgaactaacagtacccgagctctgactctagctgcata
tgtacaaaagatgctatcgcatcactgtaaagagagtcaatgaaatgtac
tggaagccagtacagggtacgcaggccaaagggggaatgtggtgtcgtta
caggcggatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11429232_11430510
seq2: B6Ng01-330K05.b_46_1298

seq1  GAATTCCATGATCATGGGCCCACTGTCGCACTTCTCTGGCAGTGAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATCATGGGCCCACTGTCGCACTTCTCTGGCAGTGAAATGA  50

seq1  GTTCCTTGGTCAGAAGCAATACTGTGTAGAATACCATGTATAGATTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGGTCAGAAGCAATACTGTGTAGAATACCATGTATAGATTCAGT  100

seq1  AGTAGCTGTGAATGAAAGTCCAAGGATCTAGCAGTTACTCAGTCTCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGTGAATGAAAGTCCAAGGATCTAGCAGTTACTCAGTCTCACAC  150

seq1  ACCAAGCAGGCTAAGGAGCAAGAGCAAGACTCCCTTCTCCCAATGTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCAGGCTAAGGAGCAAGAGCAAGACTCCCTTCTCCCAATGTCCTT  200

seq1  ATATTGTCTCCAACAGAAGGTATAGCCCAGATTAAAGGCGTGTTCCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCTCCAACAGAAGGTATAGCCCAGATTAAAGGCGTGTTCCACCA  250

seq1  CACCTTTAATCCCAGATTACCTTGAAGTCAGAGATTTAGTCTTCTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAATCCCAGATTACCTTGAAGTCAGAGATTTAGTCTTCTGGAAT  300

seq1  TCATAGCCACTATGCCTCAAGATCTCCATACCAAGATCCAGATCAGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCCACTATGCCTCAAGATCTCCATACCAAGATCCAGATCAGAATC  350

seq1  TTCTATCTCCAAGCCTCTAGATAAGGGTCACTGGTGGGCCTTCCAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTCCAAGCCTCTAGATAAGGGTCACTGGTGGGCCTTCCAATTCT  400

seq1  GGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCAGGAATAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCAGGAATAGCCA  450

seq1  CTACAGGTGGGGACACTTTAAAAATCAGCACACCACTAGCCCACAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGTGGGGACACTTTAAAAATCAGCACACCACTAGCCCACAGACTG  500

seq1  CAAAGAATTCTCACTGCCAATGGCTTGGCCAAGCTAACCCACCCCCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATTCTCACTGCCAATGGCTTGGCCAAGCTAACCCACCCCCAAAA  550

seq1  AACAAAAACAAAAAACAAAAAAAAATCAAAATAATGTAAAATTTTAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAAACAAAAAAAAATCAAAATAATGTAAAATTTTAAAAC  600

seq1  TTTTTTTTTCATATAAGCTATTCAAGATTTCTGTAGCACTGACTGATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCATATAAGCTATTCAAGATTTCTGTAGCACTGACTGATACA  650

seq1  AAGCACAATGAGATGGCACTTTAGAGACCTCAGCTTCAGGAAAGGGCGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAATGAGATGGCACTTTAGAGACCTCAGCTTCAGGAAAGGGCGAT  700

seq1  GAGATGATGTTCATGTGGCTAAATCAGTGGCACAAACACAATTTTCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATGTTCATGTGGCTAAATCAGTGGCACAAACACAATTTTCTTTC  750

seq1  CCTGTCTACGGTGGGGGCAGGTGACCTCTAAGAGGTCAGCACAACACT-A  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTGTCTACGGTGGGGGCAGGTGACCTCTAAGAGGTCAGCACAACACTAA  800

seq1  AGGGGCGGCATGACCCATCTTTGAACAGTTAGGAAAGGGATAGAGCTGCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCGGCATGACCCATCTTTGAACAGTTAGGAAAGGGATAGAGCTGCG  850

seq1  ACAAGTTTGGTCTCAGGGCTGGGGCTAAATGGTAGCACGTTTGCCTAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTGGTCTCAGGGCTGGGGCTAAATGGTAGCACGTTTGCCTAACA  900

seq1  TTCATGAGGCCATGGGAGGTGGGGCTTCTCAGATTTCTCACTGTCCTATT  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGG-CATGGGAGGTGGGGCTTCTCAGATTTCTCACTGTCCTATT  949

seq1  TGGTCACATCTGATGGAAAAAGTACAAAATAAAAATAAGGGTAAAGTTGT  999
      |||||||||||||||| |||||||| ||||||||   | |||||||||||
seq2  TGGTCACATCTGATGG-AAAAGTAC-AAATAAAA--TACGGTAAAGTTGT  995

seq1  TCAAAGAAACCAAAGCTGAAAACCTTCACAGCCCGGAACAGCTTTTTGTT  1049
      || ||||||||||||||||||  ||||||||||||| ||||| |||||||
seq2  TC-AAGAAACCAAAGCTGAAA--CTTCACAGCCCGG-ACAGC-TTTTGTT  1040

seq1  TTTGGCTGACTTCCTAGAATCTCCCTGTTGTCTGGCTAAGACTTGGTGCA  1099
      ||  |||||||  |||| |||| ||||||||||||||||||||  |||||
seq2  TT--GCTGACT--CTAG-ATCTTCCTGTTGTCTGGCTAAGACT--GTGCA  1083

seq1  GAGCACT-GAG-CTCTCCCACAG-AGGAGCCTGCCTAAGCTCTGCTGGCT  1146
      ||||||| ||| ||||||||||| |||||||||||| ||||||||| |||
seq2  GAGCACTGGAGCCTCTCCCACAGAAGGAGCCTGCCT-AGCTCTGCTTGCT  1132

seq1  CTCAGGAAGGCAGGCCCAATCCTGGGTTTCTCCTCCATGGCGAGACAGTA  1196
      |  ||  | ||| ||||||| ||||| ||||||||||||   |||  |||
seq2  CCTAG--ATGCA-GCCCAATTCTGGG-TTCTCCTCCATG--CAGAACGTA  1176

seq1  TC-CATTAGGTTAAAATGTGCTGCTCCAAG-CAGCAGAAGTGCTTGGAAT  1244
      || || ||||||   |||  |||  ||||| |||| ||  ||||  | ||
seq2  TCTCAATAGGTT---ATGGTCTG--CCAAGACAGC-GA--TGCT--GGAT  1216

seq1  GTTCAAAATGTTGCTAAGA--CAGAAAGTA-ATCACAA  1279
      |||| |||||||||| |||  |||||||||  ||||||
seq2  GTTC-AAATGTTGCTTAGAACCAGAAAGTATTTCACAA  1253