BAC Information

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BAC

Clone NameB6Ng01-331A02
Chromosome7 (Build37)
Map Location 20,380,674 - 20,511,615
singlet/doubletdoublet
Overlap geneCblc, Bcl3, Ceacam16, Ceacam19, Pvr
Upstream genePsg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam
Downstream gene2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331A02.bB6Ng01-331A02.g
ACCGA117491GA117492
length5601,054
definitionB6Ng01-331A02.b B6Ng01-331A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,380,674 - 20,381,239)(20,510,571 - 20,511,615)
sequence
caggatagctagagctacacagagaaatgggatccaaaaacaaccaacca
atctaccaaccaaacaagagaaccagtttattactctgggctgattgtgg
tgccagagccctttgaccccagtactcaggaggcagagggaggtggatct
ctgtgagtttgaggccagcctggtctacagatcgagtttaaaggccagct
ggaactacataagaaagaaaaaaagaaaggaagaaagaaaggaagaaaga
aagaaaaaagagatatgtattttcattatatatacacacacacatacata
catatatatacacatatatatgcacatgtgtgtctctatatattatacta
tatatatatatgtgatatatatatttatttattcaggcaagtcacaacaa
ggctagggagccagacccaaatcaccagtttagaccttgctctgggttcc
agctccagttctatgcagttgtcccacaagccagagggcaggcacgtcta
agatccttggaacagacatctttgctggaacccagacaggtggatgtgga
ggtgggagtg
gaattcactatgtggacaaggttgatctggaactcatagggatccctctg
cctctacctcccaaatgctggaattaaagacttgcaccaccaccacaagg
ccggaaaccatttttgttggaacatacaagcagaatccatgatcccaggc
caggccactcacagccagccccagaatggaatctctattctctatgaggc
cagtgttgtggttttcactgataataatggcgtccgatggcagactccaa
gaatgacccattttcagtgaaggagtctcccaaatcgacgccaggtatgg
ctcctgtccagacattgggcaatgtcttgttgggtgggtgtcagtgaatc
acttctgaactgcagacctgctttgcattggtggacagacaactgctttc
ctctaagctggttgtttggctattcttttttatttttaatctagttgtat
gcattagtgttgcagatagtgtggaggtgctcatggaggctggaaggagg
tattggatccccaagagctggattgataggcagttttgagctggccaatg
agaatgctgggaactgaaaccctctagaagaggaaaagactctctctcca
gcccctggcttcctactttgtttaaaaatacttcctaccatttggccttt
tattcctccatctcttgtttatcaaaacctccattctaattctgggcatc
cagccataaagacagatggatggtttgaggcactttctgcctggaggggt
ggtacagcgggtaaaggtgcttgcaaccaagtctgatgacctgggtttga
ttcccagggcccacctggtgggaaggaaggaccaactctagcaaattaac
tgtcagtccaaagaaaattgttttcccacatcctgacaatttagacatcc
aaaagccagcattcccttgggggactggggaagcctgttcctgtgttctg
ggattcggggtgatccaagggatcactggaaaggaaagaaagatacttcg
ggacgaatttatattcttcctcatcagtggggaggcgggaagtgggggat
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20380674_20381239
seq2: B6Ng01-331A02.b_47_612

seq1  GAATTCCAGGATAGCTAGAGCTACACAGAGAAATGGGATCCAAAAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCTAGAGCTACACAGAGAAATGGGATCCAAAAACAAC  50

seq1  CAACCAATCTACCAACCAAACAAGAGAACCAGTTTATTACTCTGGGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATCTACCAACCAAACAAGAGAACCAGTTTATTACTCTGGGCTGA  100

seq1  TTGTGGTGCCAGAGCCCTTTGACCCCAGTACTCAGGAGGCAGAGGGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGCCAGAGCCCTTTGACCCCAGTACTCAGGAGGCAGAGGGAGGT  150

seq1  GGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGATCGAGTTTAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGATCGAGTTTAAAGG  200

seq1  CCAGCTGGAACTACATAAGAAAGAAAAAAAGAAAGGAAGAAAGAAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGAACTACATAAGAAAGAAAAAAAGAAAGGAAGAAAGAAAGGAA  250

seq1  GAAAGAAAGAAAAAAGAGATATGTATTTTCATTATATATACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAAAAGAGATATGTATTTTCATTATATATACACACACACA  300

seq1  TACATACATATATATACACATATATATGCACATGTGTGTCTCTATATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATATATATACACATATATATGCACATGTGTGTCTCTATATATT  350

seq1  ATACTATATATATATATGTGATATATATATTTATTTATTCAGGCAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATATATATATATGTGATATATATATTTATTTATTCAGGCAAGTCA  400

seq1  CAACAAGGCTAGGGAGCCAGACCCAAATCACCAGTTTAGACCTTGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGCTAGGGAGCCAGACCCAAATCACCAGTTTAGACCTTGCTCTG  450

seq1  GGTTCCAGCTCCAGTTCTATGCAGTTGTCCCACAAGCCAGAGGGCAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGCTCCAGTTCTATGCAGTTGTCCCACAAGCCAGAGGGCAGGCA  500

seq1  CGTCTAAGATCCTTGGAACAGACATCTTTGCTGGAACCCAGACAGGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAAGATCCTTGGAACAGACATCTTTGCTGGAACCCAGACAGGTGGA  550

seq1  AGTGGAGGTGGGAGTG  566
       |||||||||||||||
seq2  TGTGGAGGTGGGAGTG  566

seq1: chr7_20510571_20511615
seq2: B6Ng01-331A02.g_67_1120 (reverse)

seq1  CCCAAT-CCCCAC-TCCCGCCT-CCCACTGATGGAGAAG-ATATAAATTC  46
      | |||| |||||| |||||||| ||||||||||  |||| ||||||||||
seq2  CACAATCCCCCACTTCCCGCCTCCCCACTGATGAGGAAGAATATAAATTC  50

seq1  GTCCCGAAGTATCTTTCTTTCC-TTCCAGTGATCCC-TGGATCACCCCGA  94
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  GTCCCGAAGTATCTTTCTTTCCTTTCCAGTGATCCCTTGGATCACCCCGA  100

seq1  A-CCCAGAACACAGGAACAGGCTTCCCAAGT-CCCCAAGGGAATGCTGGC  142
      | ||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  ATCCCAGAACACAGGAACAGGCTTCCCCAGTCCCCCAAGGGAATGCTGGC  150

seq1  TTTTGGATGTCT-AATTGTCAGGATGTGGGAAAACAATTTTCTTTGGACT  191
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATGTCTAAATTGTCAGGATGTGGGAAAACAATTTTCTTTGGACT  200

seq1  GACAGTTAATTTGCTAGAGTTGGTCCTTCCTTCCCACCAGGTGGGCCCTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTAATTTGCTAGAGTTGGTCCTTCCTTCCCACCAGGTGGGCCCTG  250

seq1  GGAATCAAACCCAGGTCATCAGACTTGGTTGCAAGCACCTTTACCCGCTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAAACCCAGGTCATCAGACTTGGTTGCAAGCACCTTTACCCGCTG  300

seq1  TACCACCCCTCCAGGCAGAAAGTGCCTCAAACCATCCATCTGTCTTTATG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCCCTCCAGGCAGAAAGTGCCTCAAACCATCCATCTGTCTTTATG  350

seq1  GCTGGATGCCCAGAATTAGAATGGAGGTTTTGATAAACAAGAGATGGAGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGCCCAGAATTAGAATGGAGGTTTTGATAAACAAGAGATGGAGG  400

seq1  AATAAAAGGCCAAATGGTAGGAAGTATTTTTAAACAAAGTAGGAAGCCAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGCCAAATGGTAGGAAGTATTTTTAAACAAAGTAGGAAGCCAG  450

seq1  GGGCTGGAGAGAGAGTCTTTTCCTCTTCTAGAGGGTTTCAGTTCCCAGCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAGAGAGAGTCTTTTCCTCTTCTAGAGGGTTTCAGTTCCCAGCA  500

seq1  TTCTCATTGGCCAGCTCAAAACTGCCTATCAATCCAGCTCTTGGGGATCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTGGCCAGCTCAAAACTGCCTATCAATCCAGCTCTTGGGGATCC  550

seq1  AATACCTCCTTCCAGCCTCCATGAGCACCTCCACACTATCTGCAACACTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTCCTTCCAGCCTCCATGAGCACCTCCACACTATCTGCAACACTA  600

seq1  ATGCATACAACTAGATTAAAAATAAAAAAGAATAGCCAAACAACCAGCTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACAACTAGATTAAAAATAAAAAAGAATAGCCAAACAACCAGCTT  650

seq1  AGAGGAAAGCAGTTGTCTGTCCACCAATGCAAAGCAGGTCTGCAGTTCAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGCAGTTGTCTGTCCACCAATGCAAAGCAGGTCTGCAGTTCAG  700

seq1  AAGTGATTCACTGACACCCACCCAACAAGACATTGCCCAATGTCTGGACA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTCACTGACACCCACCCAACAAGACATTGCCCAATGTCTGGACA  750

seq1  GGAGCCATACCTGGCGTCGATTTGGGAGACTCCTTCACTGAAAATGGGTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATACCTGGCGTCGATTTGGGAGACTCCTTCACTGAAAATGGGTC  800

seq1  ATTCTTGGAGTCTGCCATCGGACGCCATTATTATCAGTGAAAACCACAAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGAGTCTGCCATCGGACGCCATTATTATCAGTGAAAACCACAAC  850

seq1  ACTGGCCTCATAGAGAATAGAGATTCCATTCTGGGGCTGGCTGTGAGTGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTCATAGAGAATAGAGATTCCATTCTGGGGCTGGCTGTGAGTGG  900

seq1  CCTGGCCTGGGATCATGGATTCTGCTTGTATGTTCCAACAAAAATGGTTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTGGGATCATGGATTCTGCTTGTATGTTCCAACAAAAATGGTTT  950

seq1  CCGGCCTTGTGGTGGTGGTGCAAGTCTTTAATTCCAGCATTTGGGAGGTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCTTGTGGTGGTGGTGCAAGTCTTTAATTCCAGCATTTGGGAGGTA  1000

seq1  GAGGCAGAGGGATCCCTATGAGTTCCAGATCAACCTTGTCCACATAGTGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGGATCCCTATGAGTTCCAGATCAACCTTGTCCACATAGTGA  1050

seq1  ATTC  1045
      ||||
seq2  ATTC  1054