BAC Information

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BAC

Clone NameB6Ng01-332E01
Chromosome7 (Build37)
Map Location 6,089,236 - 6,211,111
singlet/doubletdoublet
Overlap geneZfp787, Zfp444, Galp, Zfp371, EG627821
Upstream geneV1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c
Downstream geneZfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332E01.bB6Ng01-332E01.g
ACCGA118403GA118404
length1,1821,161
definitionB6Ng01-332E01.b B6Ng01-332E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,089,236 - 6,090,348)(6,209,959 - 6,211,111)
sequence
gaattctccatgctaatgagatatctagatgggttctaggggttaatcaa
taagcttcccttccaggacactccttcctgaaaagacatttcatctctgg
tccaccctgaggaggttgtaaacacctgttctccacgatgaacaataata
aacagtttagaatcaagcactgtctctctcatcaagaaccatcgtggggg
ccatggaggaagccttcatcctacagagcaacactgcctcctaagtctcc
tgcagaagggccctctaggctccccagtcattcactgctaagcaaagcca
gagttccctgtgcccccagctccggcctcccaagggcccgtccattccac
actccacccagattctagtggcaacaggacacccagaagttagggaaccc
cagcttcagtctcagcttgcatcgtttctcacctgcgctgaagtacccat
ctttggctgcattttcccacccaagcggtgcttctcaaatacccagcacc
tgatgttggcgtagggtaaaatgctacctagcattctgtgtcttgtctgc
ctgagtgagttcacataccccagcaacaagacagaactcagaacctcacc
tctggaccattggactggcagcccacctttgccagtctaaagacagtctt
gagatgctgcccggtcctttctcaggaaggttcctctatcaccttgagac
aactcttagaccatagactagccggacacagaaggggcagctattttgtt
ttgtaggatagcagttgtaatgatttcaagacaccccatcagggtcaagc
tcttggatcacttcaggaggttgtaggcagagcatttgcgcccagtattc
aagtgtaggttggttctctattcttcaccaaatgaatctctcccttcctg
atatcataagaaaggcaaactgcaggcctggttacacagacctgcaatcc
caagctatgtgggaggctgagacaggtttgaaattcaaggcctgcttgag
ctagagctcaaagcacttagcaggactctatctcaaatacaaagtaaaag
cagctggaatgtagctctgtagtagcaccttatctaatgtctatccagac
tctaggttggatctcagcaatcccaggcaaaacaattatgttagtcactt
ggctactgccacctagtgagtggatctcctca
gaattctatcaaaggaggtatcctggctactcagattctctttagtccct
agattagaagctaggctttggacccaggacaggaaatgctggttgaaagt
caggttattgtttctgagggacaaaatcggctagatcagatggggaagga
aatacactcttacctttcagcactgtgtgcacgagaggatcaggaaagac
agggtgagccgggaccaatgggacatttgtccaaccaaagaaggaatatg
gaatggaatcaattaggtcatcttttatgcatcgtcccttagtgtacttc
aaagatccccaaatagggcacggaaactagaatggggagctttgacttag
cctctggttctgccatctctttgaagatgcatccattctggaaatgagag
ctccagggaatctaaccctccctgttccaggagcttagcagaatcggtct
acataacaacggattgtcaaccttctattctcagctggaggccaggttgt
ttacttctcagaaaagaagaaagccttctgacctgttactcaccgggaaa
taccgcgcggtccactctggctatatagagaactggggctcccactctct
ttgatcagctctttgatcctactgacattaatatcaaactatagtcatgg
aaaccaacaaaggttctttctttctctcttgcaagcaccaatcctatgag
atctggccccacccaatgacctttagagctaggtcaagtggccaggttca
agttgagtattctctgagtctgctcctgcacaatgtgatggttagtgttt
gccccctcacttttgtctctctgagttggatcccccccccaccccaaccc
ttgtttatatagagagggattgtgacttacttttgactggaggcggagtg
ggaaccagagtcattgagtcagccagaaaaaaaaaaaaaaatcgaagcaa
acaagaggggtgggtcagtacatatgcaaattacctcagtcctcaccttg
taagtctttgttccttcaaggaacagttacaccaccgactgttaatagga
ggggcctttacgtaaataacaaagcccgactgcccagtgttccagaacct
tcctggtgatgattgaataagaatgacctgggcctgaatccaggcttgaa
ttcgattcgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6089236_6090348
seq2: B6Ng01-332E01.b_144_1227

seq1  GGTCCACCCTGAGGAGGTTGTAAACACCTGTTCTCCACGATGAACAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACCCTGAGGAGGTTGTAAACACCTGTTCTCCACGATGAACAATAA  50

seq1  TAAACAGTTTAGAATCAAGCACTGTCTCTCTCATCAAGAACCATCGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTTTAGAATCAAGCACTGTCTCTCTCATCAAGAACCATCGTGGG  100

seq1  GGCCATGGAGGAAGCCTTCATCCTACAGAGCAACACTGCCTCCTAAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGAGGAAGCCTTCATCCTACAGAGCAACACTGCCTCCTAAGTCT  150

seq1  CCTGCAGAAGGGCCCTCTAGGCTCCCCAGTCATTCACTGCTAAGCAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGAAGGGCCCTCTAGGCTCCCCAGTCATTCACTGCTAAGCAAAGC  200

seq1  CAGAGTTCCCTGTGCCCCCAGCTCCGGCCTCCCAAGGGCCCGTCCATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCCCTGTGCCCCCAGCTCCGGCCTCCCAAGGGCCCGTCCATTCC  250

seq1  ACACTCCACCCAGATTCTAGTGGCAACAGGACACCCAGAAGTTAGGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCACCCAGATTCTAGTGGCAACAGGACACCCAGAAGTTAGGGAAC  300

seq1  CCCAGCTTCAGTCTCAGCTTGCATCGTTTCTCACCTGCGCTGAAGTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTCAGTCTCAGCTTGCATCGTTTCTCACCTGCGCTGAAGTACCC  350

seq1  ATCTTTGGCTGCATTTTCCCACCCAAGCGGTGCTTCTCAAATACCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGCTGCATTTTCCCACCCAAGCGGTGCTTCTCAAATACCCAGCA  400

seq1  CCTGATGTTGGCGTAGGGTAAAATGCTACCTAGCATTCTGTGTCTTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTTGGCGTAGGGTAAAATGCTACCTAGCATTCTGTGTCTTGTCT  450

seq1  GCCTGAGTGAGTTCACATACCCCAGCAACAAGACAGAACTCAGAACCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTGAGTTCACATACCCCAGCAACAAGACAGAACTCAGAACCTCA  500

seq1  CCTCTGGACCATTGGACTGGCAGCCCACCTTTGCCAGTCTAAAGACAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGACCATTGGACTGGCAGCCCACCTTTGCCAGTCTAAAGACAGTC  550

seq1  TTGAGATGCTGCCCGGTCCTTTCTCAGGAAGGTTCCTCTATCACCTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGCTGCCCGGTCCTTTCTCAGGAAGGTTCCTCTATCACCTTGAG  600

seq1  ACAACTCTTAGACCATAGACTAGCCGGACACAGAAGGGGCAGCTATTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTTAGACCATAGACTAGCCGGACACAGAAGGGGCAGCTATTTTG  650

seq1  TTTTGTAGGATAGCAGTTGTAATGATTTCAAGACACCCCATCAGGGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGGATAGCAGTTGTAATGATTTCAAGACACCCCATCAGGGTCAA  700

seq1  GCTCTTGGATCACTTCAGGAGGTTGTAGGCAGAGCATTTGCGCCCAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGATCACTTCAGGAGGTTGTAGGCAGAGCATTTGCGCCCAGTAT  750

seq1  TCAAGTGTAGGTTGGTTCTCTATTCTTCACCAAATGAATCTCTCCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTAGGTTGGTTCTCTATTCTTCACCAAATGAATCTCTCCCTTCC  800

seq1  TGATATCATAAGAAAGGCAAACTGCAGGCCTGGTTACACAGACCTGCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCATAAGAAAGGCAAACTGCAGGCCTGGTTACACAGACCTGCAAT  850

seq1  CCCAAGCTATGTGGGAGGCTGAGACAGGTTTGAAAATTCAAGGCCTGCTT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCCAAGCTATGTGGGAGGCTGAGACAGGTTTG-AAATTCAAGGCCTGCTT  899

seq1  GAGCTAGGAGCTCAAAGCCAACTTAGCAAGACTCTATCTCAAAATACAAA  950
      |||||| |||||||||||  |||||||| ||||||||||| |||||||||
seq2  GAGCTA-GAGCTCAAAGC--ACTTAGCAGGACTCTATCTC-AAATACAAA  945

seq1  GTAAAAGCAGGGCTGGGAATGTAGCTCTGTAGTAGCACCCTTATCTAAAA  1000
      |||||||||  ||| |||||||||||||||||||||| ||||||||  ||
seq2  GTAAAAGCA--GCT-GGAATGTAGCTCTGTAGTAGCA-CCTTATCT--AA  989

seq1  TGTCTATCCAAGACTCTAGGTTGGATCCTCAGCAAAACCCACAGCAAAAA  1050
      ||||||||| |||||||||||||||| ||||||||    | |||  ||||
seq2  TGTCTATCC-AGACTCTAGGTTGGAT-CTCAGCAA---TCCCAGGCAAAA  1034

seq1  CAAATGTTATGTTAAATTCACTTTGGCTAAACTGCCCCACTCTAGTGAGT  1100
      |||   |||||||  | |||| ||||||  |||||| |   |||||||||
seq2  CAA---TTATGTT--AGTCAC-TTGGCT--ACTGCCAC---CTAGTGAGT  1073

seq1  GGGTACCTCCTCA  1113
      ||  | |||||||
seq2  GG--ATCTCCTCA  1084

seq1: chr7_6209959_6211111
seq2: B6Ng01-332E01.g_65_1225 (reverse)

seq1  GGCGATTCGAATTC-AGCCTGAATTCAGCCCCAGGACCATTCTTATTCAA  49
      ||||| |||||||| |||||| |||||| ||||||  ||||||||||| |
seq2  GGCGAATCGAATTCAAGCCTGGATTCAGGCCCAGG-TCATTCTTATTC-A  48

seq1  ACCATCA-CAGGAA-GTTCTGG-ACACTGGGCAGTCGGCCTTTGT--ATT  94
      | ||||| |||||| ||||||| ||||||||||||||| ||||||   ||
seq2  ATCATCACCAGGAAGGTTCTGGAACACTGGGCAGTCGGGCTTTGTTATTT  98

seq1  ACGTAAAAGCCCCTCCCTATTAACAGTCGGT-GTGTAACTGTTCCTTGAA  143
      ||||||| |||||| |||||||||||||||| ||||||||||||||||||
seq2  ACGTAAAGGCCCCT-CCTATTAACAGTCGGTGGTGTAACTGTTCCTTGAA  147

seq1  GGAACAAAGACTTACAAGGTGA-GACTGAGGTAATTTGCATATGTACTGA  192
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAACAAAGACTTACAAGGTGAGGACTGAGGTAATTTGCATATGTACTGA  197

seq1  CCCA-CCCTCTTGTTTGCTTCGA-TTTTTTTTTTTTTTCTGGCTGACTCA  240
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCCACCCCTCTTGTTTGCTTCGATTTTTTTTTTTTTTTCTGGCTGACTCA  247

seq1  ATGACTCTGGTTCCCACTCCGCCTCCAGTCAAAAGTAAGTCACAATCCCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTGGTTCCCACTCCGCCTCCAGTCAAAAGTAAGTCACAATCCCT  297

seq1  CTCTATATAAACAAGGGTTGGGGT-GGGGGGGGATCCAACTCAGAGAGAC  339
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTCTATATAAACAAGGGTTGGGGTGGGGGGGGGATCCAACTCAGAGAGAC  347

seq1  AAAAGTGAGGGGGCAAACACTAACCATCACATTGTGCAGGAGCAGACTCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAGGGGGCAAACACTAACCATCACATTGTGCAGGAGCAGACTCA  397

seq1  GAGAATACTCAACTTGAACCTGGCCACTTGACCTAGCTCTAAAGGTCATT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATACTCAACTTGAACCTGGCCACTTGACCTAGCTCTAAAGGTCATT  447

seq1  GGGTGGGGCCAGATCTCATAGGATTGGTGCTTGCAAGAGAGAAAGAAAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGCCAGATCTCATAGGATTGGTGCTTGCAAGAGAGAAAGAAAGA  497

seq1  ACCTTTGTTGGTTTCCATGACTATAGTTTGATATTAATGTCAGTAGGATC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTTGGTTTCCATGACTATAGTTTGATATTAATGTCAGTAGGATC  547

seq1  AAAGAGCTGATCAAAGAGAGTGGGAGCCCCAGTTCTCTATATAGCCAGAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTGATCAAAGAGAGTGGGAGCCCCAGTTCTCTATATAGCCAGAG  597

seq1  TGGACCGCGCGGTATTTCCCGGTGAGTAACAGGTCAGAAGGCTTTCTTCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCGCGCGGTATTTCCCGGTGAGTAACAGGTCAGAAGGCTTTCTTCT  647

seq1  TTTCTGAGAAGTAAACAACCTGGCCTCCAGCTGAGAATAGAAGGTTGACA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGAAGTAAACAACCTGGCCTCCAGCTGAGAATAGAAGGTTGACA  697

seq1  ATCCGTTGTTATGTAGACCGATTCTGCTAAGCTCCTGGAACAGGGAGGGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTTGTTATGTAGACCGATTCTGCTAAGCTCCTGGAACAGGGAGGGT  747

seq1  TAGATTCCCTGGAGCTCTCATTTCCAGAATGGATGCATCTTCAAAGAGAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCCCTGGAGCTCTCATTTCCAGAATGGATGCATCTTCAAAGAGAT  797

seq1  GGCAGAACCAGAGGCTAAGTCAAAGCTCCCCATTCTAGTTTCCGTGCCCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACCAGAGGCTAAGTCAAAGCTCCCCATTCTAGTTTCCGTGCCCT  847

seq1  ATTTGGGGATCTTTGAAGTACACTAAGGGACGATGCATAAAAGATGACCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGATCTTTGAAGTACACTAAGGGACGATGCATAAAAGATGACCT  897

seq1  AATTGATTCCATTCCATATTCCTTCTTTGGTTGGACAAATGTCCCATTGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTCCATTCCATATTCCTTCTTTGGTTGGACAAATGTCCCATTGG  947

seq1  TCCCGGCTCACCCTGTCTTTCCTGATCCTCTCGTGCACACAGTGCTGAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGCTCACCCTGTCTTTCCTGATCCTCTCGTGCACACAGTGCTGAAA  997

seq1  GGTAAGAGTGTATTTCCTTCCCCATCTGATCTAGCCGATTTTGTCCCTCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGTGTATTTCCTTCCCCATCTGATCTAGCCGATTTTGTCCCTCA  1047

seq1  GAAACAATAACCTGACTTTCAACCAGCATTTCCTGTCCTGGGTCCAAAGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATAACCTGACTTTCAACCAGCATTTCCTGTCCTGGGTCCAAAGC  1097

seq1  CTAGCTTCTAATCTAGGGACTAAAGAGAATCTGAGTAGCCAGGATACCTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCTAATCTAGGGACTAAAGAGAATCTGAGTAGCCAGGATACCTC  1147

seq1  CTTTGATAGAATTC  1153
      ||||||||||||||
seq2  CTTTGATAGAATTC  1161