BAC Information

Click to search

BAC

Clone NameB6Ng01-334C01
Chromosome7 (Build37)
Map Location 29,000,816 - 29,175,417
singlet/doubletdoublet
Overlap geneEid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl
Upstream geneItpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b
Downstream genePaf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334C01.bB6Ng01-334C01.g
ACCGA119709GA119710
length1,115369
definitionB6Ng01-334C01.b B6Ng01-334C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,000,816 - 29,001,702)(29,175,043 - 29,175,417)
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaattgcctctgg
cattacactatcactttgaataaaagctaagtcactgccctacacaggaa
tttaccatcttctaggaagaaggaagtttgagacctaaagaggaaccaga
gtagatacttagaactttagatagctgagttacacccatacacacgcatt
tacaatggcctagggggaaggtggactatacaatagactaaaataggaac
tatggcaagggcatgaagcccttgaccctggcttctaagattaagtgaat
cttaggtggagctctttttgatcccagttgttaacaatgaattctatccc
aggtggttcctgttagaatttctgtgtttgtattcctctgttttgtgtaa
gaatccagtaacctctttgtaccttgctggtgtgtcacccaacttcctga
ttttcttctgtataaaaagtttgatgctcaatttgacaaattacattcag
attctatacaacctctcctgtgtgcatctgtctgtcattcaatccaacgc
tctgcccacctgtgactagagacccattccatgcagacaaaggggcccag
agggtctgtggcagccattggatcccctgtgattaaatttacaagcaact
gtgagccaccatgtatatgctgggatccaaaccttggtcctcctctagag
ctgtaagggctcttaatccgtgagacatctcactagcccaaaactaattt
tttaaaaaattgttttaataaagatgttatttattttatgtatgcgagta
ccccatcactgtgtactcagacacaccagaagagggcatcagatcccatt
acagatggttgtgagccaccatgtggttactgggaattgaactcacgacc
tctggaagaatagtcagtgctcttaaccactgagccatctctcagcccat
cccaaactggatttttgttttggcttttttgaacaggtttctctgagtag
ccctagctgttcccaaaccttgggtctggtaacaagctttcctccaattc
acagagaatcatttgctctgctcaagctgagactaaagattttctgtgaa
cctgttgccctggaa
cacctgacaatctggccagaagggcaacaaggacagggcctgagaggagg
gtatggggacctatgcttccttactagggactgatatgagtttaaggctt
cagctcttgggggtagggcaaaactgaggagacctgaatgagcagaccga
gaagcagacgtgataaagcctaggccaggactgtgagagatgtgggcagt
aacacctaggctgtagtgtgattggaaaggttttattcctaacacccaca
ttaaaaaggtgggcatggccgggtggtggtggtgcacacctttaatccca
gcacttgggaggcagaggcaggccgattttgtttatttggtttggtttgg
tttggtttggttttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_29000816_29001702
seq2: B6Ng01-334C01.b_285_1160

seq1  AAAATAGGAACTATGGCAAGGGCATGAAGCCCTTGACCCTGGCTTCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGAACTATGGCAAGGGCATGAAGCCCTTGACCCTGGCTTCTAAG  50

seq1  ATTAAGTGAATCTTAGGTGGAGCTCTTTTTGATCCCAGTTGTTAACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGAATCTTAGGTGGAGCTCTTTTTGATCCCAGTTGTTAACAATG  100

seq1  AATTCTATCCCAGGTGGTTCCTGTTAGAATTTCTGTGTTTGTATTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATCCCAGGTGGTTCCTGTTAGAATTTCTGTGTTTGTATTCCTCT  150

seq1  GTTTTGTGTAAGAATCCAGTAACCTCTTTGTACCTTGCTGGTGTGTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTAAGAATCCAGTAACCTCTTTGTACCTTGCTGGTGTGTCACC  200

seq1  CAACTTCCTGATTTTCTTCTGTATAAAAAGTTTGATGCTCAATTTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCTGATTTTCTTCTGTATAAAAAGTTTGATGCTCAATTTGACAA  250

seq1  ATTACATTCAGATTCTATACAACCTCTCCTGTGTGCATCTGTCTGTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTCAGATTCTATACAACCTCTCCTGTGTGCATCTGTCTGTCATT  300

seq1  CAATCCAACGCTCTGCCCACCTGTGACTAGAGACCCATTCCATGCAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAACGCTCTGCCCACCTGTGACTAGAGACCCATTCCATGCAGACA  350

seq1  AAGGGGCCCAGAGGGTCTGTGGCAGCCATTGGATCCCCTGTGATTAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCCCAGAGGGTCTGTGGCAGCCATTGGATCCCCTGTGATTAAATT  400

seq1  TACAAGCAACTGTGAGCCACCATGTATATGCTGGGATCCAAACCTTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCAACTGTGAGCCACCATGTATATGCTGGGATCCAAACCTTGGTC  450

seq1  CTCCTCTAGAGCTGTAAGGGCTCTTAATCCGTGAGACATCTCACTAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTAGAGCTGTAAGGGCTCTTAATCCGTGAGACATCTCACTAGCCC  500

seq1  AAAACTAATTTTTTAAAAAATTGTTTTAATAAAGATGTTATTTATTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAATTTTTTAAAAAATTGTTTTAATAAAGATGTTATTTATTTTAT  550

seq1  GTATGCGAGTACCCCATCACTGTGTACTCAGACACACCAGAAGAGGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCGAGTACCCCATCACTGTGTACTCAGACACACCAGAAGAGGGCAT  600

seq1  CAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTACTGGGAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTACTGGGAATTG  650

seq1  AACTCAGGACCTCTGGAAGAATAGTCAGTGCTCTTAACCACTGAGCCATC  700
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACGACCTCTGGAAGAATAGTCAGTGCTCTTAACCACTGAGCCATC  700

seq1  TCTCCAGCCCATCCCAAACTGGATTTTTGTTTTGGCTTTTTTGACAGGGT  750
      ||| ||||||||||||||||||||||||||||||||||||||||   |||
seq2  TCT-CAGCCCATCCCAAACTGGATTTTTGTTTTGGCTTTTTTGAACAGGT  749

seq1  TTCTCTGTGTAGCCCTAGCTGTT-CCAAACCTTGGCTCTGTAAACAAGCT  799
      ||||||| ||||||||||||||| ||||||||||| ||||  ||||||||
seq2  TTCTCTGAGTAGCCCTAGCTGTTCCCAAACCTTGGGTCTGGTAACAAGCT  799

seq1  TTCCTTCAAATTCACAGAGATCCACTTGCCTCTGCCTTCCAAGTGCTGAG  849
      |||| || ||||||||||||  || ||| ||||||    |||  ||||||
seq2  TTCC-TCCAATTCACAGAGAATCATTTG-CTCTGC---TCAA--GCTGAG  842

seq1  ACTAAAGGTTTCTCTGTGAACCCCTGGTTGCCCTGGAA  887
      ||||||| ||| ||||||||||    ||||||||||||
seq2  ACTAAAGATTT-TCTGTGAACC---TGTTGCCCTGGAA  876

seq1: chr7_29175043_29175417
seq2: B6Ng01-334C01.g_65_439 (reverse)

seq1  AAACCAAAACCAAACCAAACCAAACCAAACCAAATAAACAAAATCGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAACCAAACCAAACCAAACCAAACCAAATAAACAAAATCGGCCT  50

seq1  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACCACCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACCACCCG  100

seq1  GCCATGCCCACCTTTTTAATGTGGGTGTTAGGAATAAAACCTTTCCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCCCACCTTTTTAATGTGGGTGTTAGGAATAAAACCTTTCCAATC  150

seq1  ACACTACAGCCTAGGTGTTACTGCCCACATCTCTCACAGTCCTGGCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACAGCCTAGGTGTTACTGCCCACATCTCTCACAGTCCTGGCCTAG  200

seq1  GCTTTATCACGTCTGCTTCTCGGTCTGCTCATTCAGGTCTCCTCAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCACGTCTGCTTCTCGGTCTGCTCATTCAGGTCTCCTCAGTTTT  250

seq1  GCCCTACCCCCAAGAGCTGAAGCCTTAAACTCATATCAGTCCCTAGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACCCCCAAGAGCTGAAGCCTTAAACTCATATCAGTCCCTAGTAAG  300

seq1  GAAGCATAGGTCCCCATACCCTCCTCTCAGGCCCTGTCCTTGTTGCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATAGGTCCCCATACCCTCCTCTCAGGCCCTGTCCTTGTTGCCCTT  350

seq1  CTGGCCAGATTGTCAGGTGGAATTC  375
      |||||||||||||||||||||||||
seq2  CTGGCCAGATTGTCAGGTGGAATTC  375