BAC Information

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BAC

Clone NameB6Ng01-334F08
Chromosome7 (Build37)
Map Location 20,148,174 - 20,267,128
singlet/doubletdoublet
Overlap geneGemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4
Upstream geneEG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868
Downstream geneApoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334F08.bB6Ng01-334F08.g
ACCGA119861GA119862
length500694
definitionB6Ng01-334F08.b B6Ng01-334F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,266,623 - 20,267,128)(20,148,174 - 20,148,866)
sequence
caggccagcctgggctacttgagaccctgtctcaaaatataatagaagga
acccctcacatacaccaccaatctctcaagtatagattacggactcaatt
ctcaaaggaagaaactgtatccaggaaaactctgggggggtgtgtggagt
cagtgttggggcttcgtgtcttgtacaaggccagggcggcacactgttta
ggaaaggaggcaggcaagggcagacatggcctctgactgtcactgtcact
ggccccatcgctttgaagtcctgccaaggagtgtggggaggtcacaaggg
gagggctctttccagtgctgcctgtcccttccccggtgaaagagtggagt
acagcaggagggacagagatagagagggaccaagtccccagaaatgtccc
tgctgaggtgcaggccacgggacctgccatcagtctccctttctgtgctg
ttcttggtcagctttgtaggtaaggagttggggggctgctggaggtgggg

gctaggctggattacaaagggagcctcagacaagcaggtgctacagcagg
agaccctggtggggctaagccaagtactgggagcaggataaagtgatgga
ggtgctgagagctgagagccaagctgaatatcggatgagtacgtacaagt
gacagaagcgacagaagagcacactttagcacaattttcgtcaaaattgt
atcaaatgtaaattacaatattagacgagtctgctaggtattcatgaacc
tgctataaaaacaaaacaaaacaaaaactgggagcaggaattccaaaggc
tcgggatgaaccagctgaccaaacctgagcgagcctaagccacacctcca
aggggtcgattccaaagctcaggattcatctgggcactttcgcttttcct
tctcagctcattaaagcccactggcacagggactgaaaccacagaacggg
atttgaggagggtcgagcacagcattgccaagtagagagctaggctggaa
ctggagggaggctccagtgtgaactgataactgagaccactgctaagggt
agctgctttcctcttcacagttgggggttagcacactttggagactgaga
agtaccaaaagcccctataattaatgcaaaccttcagttacattctgaac
tccaaaaggcattaagtgggctttgtttgggggggggagggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20266623_20267128
seq2: B6Ng01-334F08.b_50_555 (reverse)

seq1  CCCCACCTCCAGCAGCCCCCCAACTCCTTACCTACAAAGCTGACCAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTCCAGCAGCCCCCCAACTCCTTACCTACAAAGCTGACCAAGAA  50

seq1  CAGCACAGAAAGGGAGACTGATGGCAGGTCCCGTGGCCTGCACCTCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGAAAGGGAGACTGATGGCAGGTCCCGTGGCCTGCACCTCAGCA  100

seq1  GGGACATTTCTGGGGACTTGGTCCCTCTCTATCTCTGTCCCTCCTGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTTCTGGGGACTTGGTCCCTCTCTATCTCTGTCCCTCCTGCTGT  150

seq1  ACTCCACTCTTTCACCGGGGAAGGGACAGGCAGCACTGGAAAGAGCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACTCTTTCACCGGGGAAGGGACAGGCAGCACTGGAAAGAGCCCTC  200

seq1  CCCTTGTGACCTCCCCACACTCCTTGGCAGGACTTCAAAGCGATGGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTGACCTCCCCACACTCCTTGGCAGGACTTCAAAGCGATGGGGCC  250

seq1  AGTGACAGTGACAGTCAGAGGCCATGTCTGCCCTTGCCTGCCTCCTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGTGACAGTCAGAGGCCATGTCTGCCCTTGCCTGCCTCCTTTCC  300

seq1  TAAACAGTGTGCCGCCCTGGCCTTGTACAAGACACGAAGCCCCAACACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTGTGCCGCCCTGGCCTTGTACAAGACACGAAGCCCCAACACTG  350

seq1  ACTCCACACACCCCCCCAGAGTTTTCCTGGATACAGTTTCTTCCTTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACACACCCCCCCAGAGTTTTCCTGGATACAGTTTCTTCCTTTGAG  400

seq1  AATTGAGTCCGTAATCTATACTTGAGAGATTGGTGGTGTATGTGAGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGTCCGTAATCTATACTTGAGAGATTGGTGGTGTATGTGAGGGGT  450

seq1  TCCTTCTATTATATTTTGAGACAGGGTCTCAAGTAGCCCAGGCTGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTATTATATTTTGAGACAGGGTCTCAAGTAGCCCAGGCTGGCCTG  500

seq1  GAATTC  506
      ||||||
seq2  GAATTC  506

seq1: chr7_20148174_20148866
seq2: B6Ng01-334F08.g_78_771

seq1  GCTAGGCTGGATTACAAAGGGAGCCTCAGACAAGCAGGTGCTACAGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCTGGATTACAAAGGGAGCCTCAGACAAGCAGGTGCTACAGCAGG  50

seq1  AGACCCTGGTGGGGCTAAGCCAAGTACTGGGAGCAGGATAAAGTGATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGGTGGGGCTAAGCCAAGTACTGGGAGCAGGATAAAGTGATGGA  100

seq1  GGTGCTGAGAGCTGAGAGCCAAGCTGAATATCGGATGAGTACGTACAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGAGAGCTGAGAGCCAAGCTGAATATCGGATGAGTACGTACAAGT  150

seq1  GACAGAAGCGACAGAAGAGCACACTTTAGCACAATTTTCGTCAAAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGCGACAGAAGAGCACACTTTAGCACAATTTTCGTCAAAATTGT  200

seq1  ATCAAATGTAAATTACAATATTAGACGAGTCTGCTAGGTATTCATGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGTAAATTACAATATTAGACGAGTCTGCTAGGTATTCATGAACC  250

seq1  TGCTATAAAAACAAAACAAAACAAAAACTGGGAGCAGGAATTCCAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAAAACAAAACAAAACAAAAACTGGGAGCAGGAATTCCAAAGGC  300

seq1  TCGGGATGAACCAGCTGACCAAACCTGAGCGAGCCTAAGCCACACCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGATGAACCAGCTGACCAAACCTGAGCGAGCCTAAGCCACACCTCCA  350

seq1  AGGGGTCGATTCCAAAGCTCAGGATTCATCTGGGCACTTTCGCTTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCGATTCCAAAGCTCAGGATTCATCTGGGCACTTTCGCTTTTCCT  400

seq1  TCTCAGCTCATTAAAGCCCACTGGCACAGGGACTGAAACCACAGAACGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTCATTAAAGCCCACTGGCACAGGGACTGAAACCACAGAACGGG  450

seq1  ATTTGAGGAGGGTCGAGCACAGCATTGCCAAGTAGAGAGCTAGGCTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGAGGGTCGAGCACAGCATTGCCAAGTAGAGAGCTAGGCTGGAA  500

seq1  CTGGAGGGAGGCTCCAGTGTGAACTGATAACTGAGACCACTGCTAAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGGAGGCTCCAGTGTGAACTGATAACTGAGACCACTGCTAAGGGT  550

seq1  AGCTGCTTTCCTCTTCACAGTTGGGGGTTAGCACACTTTGGAGACTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTTCCTCTTCACAGTTGGGGGTTAGCACACTTTGGAGACTGAGA  600

seq1  AGTACCAAAAGCCCCTATAATTAATGCAAACCTTCAGTTACATTCTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAAAAGCCCCTATAATTAATGCAAACCTTCAGTTACATTCTGAAC  650

seq1  TCCAAAAGGCATTAAGTGGGCTTTGTTT-GGGGGGGGAGGGTTG  693
      |||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCAAAAGGCATTAAGTGGGCTTTGTTTGGGGGGGGGAGGGTTG  694