BAC Information

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BAC

Clone NameB6Ng01-334J02
Chromosome7 (Build37)7 (Build37)
Map Location 33,495,056 - 33,496,23434,211,131 - 34,211,582
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929, EG668379, EG668381, LOC668386, LOC626373, EG384589, EG668393, EG330689, LOC100043362, LOC100043365, EG384591, LOC668398, EG384596, LOC100043370, LOC434161, EG270499
Downstream geneLOC100043845, LOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334J02.bB6Ng01-334J02.g
ACCGA120041GA120042
length1,165751
definitionB6Ng01-334J02.b B6Ng01-334J02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,495,056 - 33,496,234)(34,211,131 - 34,211,582)
sequence
gaattcagtaattctcttatttacccatgagcttatctccctgcccaagt
tcagatctccacatcccactcagggtcaccacaacagtatggagaatatt
cacaggtatagggccttgcctcacagtcacctgcttcacagtcactgtca
cctgcctcccattcacctatcttacagtcacctacctcacagcccctgtt
acctgcctcacagttagtcacatgcctcagactcactgtcatctacctca
cagttatcttcatcacagtccctgtcacttgcctcacagtcacctgccac
acagttagtcacctgactgagactcattgtcatcaacctcacagttatct
tcatcatagtccctgtcacttgcctcacagtcacctgcctcacagttagt
caccttcctcaccattcattacctgcctcacaattagtcacctacatcat
tgccaccgaccattatgactgttctgattcatactcaacccagggccagt
gtctcttggcagccctggtcccttgccaaacatcattctaacacatatac
ttgataaaacctcatatgtcattgtgacagccatctcagtctaagagagg
agtccagtgttattaagtggaccacccccttccttaaaattagcaccact
gccatatcctatgattgtttccttccctaaaaataaccaacttctacttc
catcctataatacatcaccaaaatatccagttggtctttatttggaatct
tggtcctgaatttctccagacttgtgtccagactcatggccttcattcag
acttctctaggactgttcagattcaacaaagctctaaacctatttcttaa
cattccttataaaaaattatgcaactgatctctccacatcagcagacaac
attttcttctgtttagctatagacatcaaaagcctcagtggctgtgtccc
cttcttgcctctaatcccattggactctcccagaccaacagagatattcc
ttttctctatacctgaaatcacaatgatgatccatccagagcctggactt
ggcttcactggcactgtccagagctactgtttagctattcttctgctctc
cactcctgagcagtgaataatatgctgtccacttctggtcactatatgtg
gaagcgtttgatgtg
gaattccttctacttgagtttcatgtgtttttaaaattgtatcttgggta
tcctaagttacagggctaatatccacttatcagtgaggagccagagaaag
atccagggagctgaaggtgactaaagccccatagaaggaacatcaatatg
aacaaacaagtatccacagagttccttggtactgtaccaccaatcaaaga
aaacacctggtggtacttgtggctctgaatatatatgtagacgaggatga
cctagtcagtgatcactgggatgagaggtccttggtcctgtgaaggctct
atgacttaatataggggaatgtcaagaccaggaattggagtaggtgggtt
ggagagcacagacagtggggagaggatagagaattttaagaggggaaact
aggaaacctttgaaatgtaaataaagaaaatatctaatgtcaaacaagaa
aaaaaaagattaatgagtctcaagttattccataatagataaggagaact
caattcgtgaagccaatattaccctgacaccaaagtcaaacaaacacaca
acaggaaaagaaaatcataggctactctctatgatgaaagtaaacacaat
attcttagtaaagtcatgttgagcacaattcaagaacacatcatttcaga
gatggttcaatgtacacacatcacagtgcatcatcacaaactcaaagaca
ggaataaaaatagcatttaaactaatgcagggggaggcatctgttaatat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_33495056_33496234
seq2: B6Ng01-334J02.b_46_1210 (reverse)

seq1  CACATCAAACGTTCCCACCATTATAGGTGAACAGAGTTGGAACAGCATA-  49
      ||||||||||| | ||||   |||| |||| ||||  ||| |||||||| 
seq2  CACATCAAACGCTTCCAC--ATATA-GTGACCAGAAGTGG-ACAGCATAT  46

seq1  TATTCACTGGCTCAGGAGTGGAGAGCAGAAGATAGGCTTAAAACAGTAGC  99
      |||||||| |||||||||||||||||||||||   |||  ||||||||||
seq2  TATTCACT-GCTCAGGAGTGGAGAGCAGAAGAATAGCT--AAACAGTAGC  93

seq1  TTCTGGGACAGTGCCAGTGAAGGCCAAAGTCCAGGGCTCTGGATGGATCA  149
       ||| |||||||||||||||||  | ||||||| ||||||||||||||||
seq2  -TCT-GGACAGTGCCAGTGAAG--CCAAGTCCA-GGCTCTGGATGGATCA  138

seq1  TCATTGTGATTTCAGGTATAGAGAAAAGGAATATCTTCTGTTGGTCTGGG  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCATTGTGATTTCAGGTATAGAGAAAAGGAATATC-TCTGTTGGTCTGGG  187

seq1  AGAGTCCAATGGGATTAGAGGCAAAGAGGGGACACAGCCCACCTGAGGCT  249
      ||||||||||||||||||||||||  |||||||||||||   ||||||||
seq2  AGAGTCCAATGGGATTAGAGGCAAGAAGGGGACACAGCC--ACTGAGGCT  235

seq1  TTTGATGTCTATAGCTAAACAGAAGAAAATGTTGTCTGCTGATGTGGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTCTATAGCTAAACAGAAGAAAATGTTGTCTGCTGATGTGGAGA  285

seq1  GATCAGTTGCATAATTTTTTATAAGGAATGTTAAGAAATAGGTTTAGAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTGCATAATTTTTTATAAGGAATGTTAAGAAATAGGTTTAGAGC  335

seq1  TTTGTTGAATCTGAACAGTCCTAGAGAAGTCTGAATGAAGGCCATGAGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAATCTGAACAGTCCTAGAGAAGTCTGAATGAAGGCCATGAGTC  385

seq1  TGGACACAAGTCTGGAGAAATTCAGGACCAAGATTCCAAATAAAGACCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACAAGTCTGGAGAAATTCAGGACCAAGATTCCAAATAAAGACCAA  435

seq1  CTGGATATTTTGGTGATGTATTATAGGATGGAAGTAGAAGTTGGTTATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATATTTTGGTGATGTATTATAGGATGGAAGTAGAAGTTGGTTATTT  485

seq1  TTAGGGAAGGAAACAATCATAGGATATGGCAGTGGTGCTAATTTTAAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAGGAAACAATCATAGGATATGGCAGTGGTGCTAATTTTAAGGA  535

seq1  AGGGGGTGGTCCACTTAATAACACTGGACTCCTCTCTTAGACTGAGATGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGGTCCACTTAATAACACTGGACTCCTCTCTTAGACTGAGATGG  585

seq1  CTGTCACAATGACATATGAGGTTTTATCAAGTATATGTGTTAGAATGATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAATGACATATGAGGTTTTATCAAGTATATGTGTTAGAATGATG  635

seq1  TTTGGCAAGGGACCAGGGCTGCCAAGAGACACTGGCCCTGGGTTGAGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAAGGGACCAGGGCTGCCAAGAGACACTGGCCCTGGGTTGAGTAT  685

seq1  GAATCAGAACAGTCATAATGGTCGGTGGCAATGATGTAGGTGACTAATTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAACAGTCATAATGGTCGGTGGCAATGATGTAGGTGACTAATTG  735

seq1  TGAGGCAGGTAATGAATGGTGAGGAAGGTGACTAACTGTGAGGCAGGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGGTAATGAATGGTGAGGAAGGTGACTAACTGTGAGGCAGGTGA  785

seq1  CTGTGAGGCAAGTGACAGGGACTATGATGAAGATAACTGTGAGGTTGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGCAAGTGACAGGGACTATGATGAAGATAACTGTGAGGTTGATG  835

seq1  ACAATGAGTCTCAGTCAGGTGACTAACTGTGTGGCAGGTGACTGTGAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGTCTCAGTCAGGTGACTAACTGTGTGGCAGGTGACTGTGAGGC  885

seq1  AAGTGACAGGGACTGTGATGAAGATAACTGTGAGGTAGATGACAGTGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAGGGACTGTGATGAAGATAACTGTGAGGTAGATGACAGTGAGT  935

seq1  CTGAGGCATGTGACTAACTGTGAGGCAGGTAACAGGGGCTGTGAGGTAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCATGTGACTAACTGTGAGGCAGGTAACAGGGGCTGTGAGGTAGG  985

seq1  TGACTGTAAGATAGGTGAATGGGAGGCAGGTGACAGTGACTGTGAAGCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTAAGATAGGTGAATGGGAGGCAGGTGACAGTGACTGTGAAGCAG  1035

seq1  GTGACTGTGAGGCAAGGCCCTATACCTGTGAATATTCTCCATACTGTTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTGAGGCAAGGCCCTATACCTGTGAATATTCTCCATACTGTTGT  1085

seq1  GGTGACCCTGAGTGGGATGTGGAGATCTGAACTTGGGCAGGGAGATAAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCTGAGTGGGATGTGGAGATCTGAACTTGGGCAGGGAGATAAGC  1135

seq1  TCATGGGTAAATAAGAGAATTACTGAATTC  1179
      ||||||||||||||||||||||||||||||
seq2  TCATGGGTAAATAAGAGAATTACTGAATTC  1165

seq1: chr7_34211131_34211582
seq2: B6Ng01-334J02.g_357_813

seq1  GGCTCTATGACTCAGTATAGGGGAATGCCAAGACCAGGAATTAGAGTATG  50
      |||||||||||| | |||||||||||| |||||||||||||| ||||| |
seq2  GGCTCTATGACTTAATATAGGGGAATGTCAAGACCAGGAATTGGAGTAGG  50

seq1  TGGGTTGGAGAACACGGGCAG-GGGTAGGGAAGAGGGAATTTTAAGAGGG  99
      ||||||||||| ||| | ||| ||| || | | || ||||||||||||||
seq2  TGGGTTGGAGAGCACAGACAGTGGGGAGAGGATAGAGAATTTTAAGAGGG  100

seq1  GAAACTTGGAAACCTGTGAAATATAAATAAAGAAAATATCTAATG-AAAA  148
      |||||| |||||||| |||||| ||||||||||||||||||||||  |||
seq2  GAAACTAGGAAACCTTTGAAATGTAAATAAAGAAAATATCTAATGTCAAA  150

seq1  CAAG--AAAAAAAGATTAATGAGTCTCAAGTTATTCCTTAGTAGAT-AGG  195
      ||||  ||||||||||||||||||||||||||||||| || ||||| |||
seq2  CAAGAAAAAAAAAGATTAATGAGTCTCAAGTTATTCCATAATAGATAAGG  200

seq1  AGAACTCAATTAGTGAAGCCAATATTACCCTGACACCGAAGTCAAACAAA  245
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  AGAACTCAATTCGTGAAGCCAATATTACCCTGACACCAAAGTCAAACAAA  250

seq1  GACACACCATGTAAAGAAAATCATAGGCTACTCTCTATGATGAAATTAAA  295
       ||||| || | ||||||||||||||||||||||||||||||||| ||||
seq2  CACACAACAGGAAAAGAAAATCATAGGCTACTCTCTATGATGAAAGTAAA  300

seq1  CACAATATTCTTAGTAAAGTCATGTTGAACACAATTCAAGAACACATCAT  345
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACAATATTCTTAGTAAAGTCATGTTGAGCACAATTCAAGAACACATCAT  350

seq1  TTCAGAGATGATTCAACGTACACACATCCCAGTGCATCATCACAAACTCA  395
      |||||||||| ||||| ||||||||||| |||||||||||||||||||||
seq2  TTCAGAGATGGTTCAATGTACACACATCACAGTGCATCATCACAAACTCA  400

seq1  AAGACAGGAATAAAAATAGCATTTAAACTAATGCAGGAGGAGGCATTTGT  445
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  AAGACAGGAATAAAAATAGCATTTAAACTAATGCAGGGGGAGGCATCTGT  450

seq1  TAATATC  452
      |||||||
seq2  TAATATC  457