BAC Information

Click to search

BAC

Clone NameB6Ng01-335E20
Chromosome7 (Build37)
Map Location 28,774,462 - 28,907,268
singlet/doubletdoublet
Overlap geneLOC100043772, Psmc4
Upstream geneCyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik
Downstream geneLOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335E20.bB6Ng01-335E20.g
ACCGA120576GA120577
length1,1331,026
definitionB6Ng01-335E20.b B6Ng01-335E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,774,462 - 28,775,592)(28,906,247 - 28,907,268)
sequence
gaattctctgatgttgactaagtagtgattgaagtctgaaggctgaccca
cacagctcacacttaaaaggtttcacattagtgtgaatactctgatgttc
cataaaatttgagcgtcgacgaaataatttcccgcattccttgcactgat
atagtttcacatcagtatggattctctgatgttcagtaaggtggtactta
cgtctgaagactgacccacacagattacacttgaaaggcttctcatcagt
gtgagttttctgatgctcagaaaggtatacctgaagcctaaaagccttcc
cacatacatgacacccaaaggctttctcactggaatgaatactctggtgt
tggatatggtaggaaccattactgaatatctttccacactgtttacactc
aaatgatttctttccattatgaatgttctgaggctgagtgatgagctgtg
ctagaacagtgaaggcactgccacattctttacactgaaagggtttcttg
tcataatgaactttctgatgtcgcatgaagtttgagcgccgattaaaggc
tttcccacattcattacattcatatggtttcacaccagcatgaataatct
tatgttgaacaaggctggagccatgcttgaaaaatttaccacattcatta
cattcaaaaggtctctcaccactgtgagctttctgatgtcttgtaagatg
ctgttgtaatctgaaggccttcccacaatccttacattcatagggcttct
ctccagtgtgaacactatgatgctgtataagagttgacctacaaccaaag
tacttcccatactctttacattcatattcattgtctgtattgtgagttag
agtgtggcaggtataagtgagcatttttttccttgttactaatcttttga
tcaacatctccttgacaaccctgtagtcccgtgaatgtactatagctgtg
ggccattactaaaactgggagcccttgagttcaaaaggttcacttatatg
ctttatgggtctgtttggtaaatttatagtatatatggtggttgtctgga
gaatatttgtttgagctttcatattctggatccaatctgaaaaaaaagaa
gaaacaagagcatttattttcgttatacaaaat
gaattctctaaagtggccctaaaactctgagaagtcacctcttccgttga
tcagagaggccctggagtcaccagagtttagatggcaactgcgtatatcc
tgtaaagagagccggtgaaggaagacatgtccatggtcacacttgtgccg
tatgctgggaactgtgtggagtgtgatagaccctgatcccagcctgctgg
aaattgctcatctctagacagaattagctcctgagagcctcagttccaga
cctgccactttctgcccaccagcttctaactctgcaccttgctctctgta
gtactaaaactcgaagcatcctccagttccagcttccattaagctgtcca
taaacgtgtgccgctgcacctcctcatgcgcacgctgccctcagcaccca
tccaaccccactctcatcatcacacacctttactcacatctcagactgta
agctgactccagctctccaactcctctgttcttgcatcctagaagctgag
tgtggaggggtaaaacacaggaccactctggctcattcataatgaaactc
tctggaagaaacttttgtacttgtcccatctcttatttcttggactaatt
cccaagtttttccttacaccagttgaccaaaagctgcaaaagtccttcat
ggtactaaagccagtggtgcatccattttctgtcatcttaatggccagcg
gcagtgtttgacagccgcctgctttgcatatgtgatttccacttggcctc
cagtggtctctatcaacttcattcacttttgccttcttgattggattcag
gaattaagggaattagtcctcactctaactctatgagaaaacattagccc
tcctccggtttaaaggtgatgaaaccaagtcagagagagactgggcgact
caccaggcttataaacggtgaggccagagtctcttgtctttctctctcca
cctttatacctcttctccatcatcatcatccatccatccatccatcatgc
tctacatccatccatcatcatccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_28774462_28775592
seq2: B6Ng01-335E20.b_45_1177

seq1  GAATTCTCTGATGTTGACTAAGTAGTGATTGAAGTCTGAAGGCTGACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGTTGACTAAGTAGTGATTGAAGTCTGAAGGCTGACCCA  50

seq1  CACAGCTCACACTTAAAAGGTTTCACATTAGTGTGAATACTCTGATGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCACACTTAAAAGGTTTCACATTAGTGTGAATACTCTGATGTTC  100

seq1  CATAAAATTTGAGCGTCGACGAAATAATTTCCCGCATTCCTTGCACTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTTGAGCGTCGACGAAATAATTTCCCGCATTCCTTGCACTGAT  150

seq1  ATAGTTTCACATCAGTATGGATTCTCTGATGTTCAGTAAGGTGGTACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCACATCAGTATGGATTCTCTGATGTTCAGTAAGGTGGTACTTA  200

seq1  CGTCTGAAGACTGACCCACACAGATTACACTTGAAAGGCTTCTCATCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGAAGACTGACCCACACAGATTACACTTGAAAGGCTTCTCATCAGT  250

seq1  GTGAGTTTTCTGATGCTCAGAAAGGTATACCTGAAGCCTAAAAGCCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTTCTGATGCTCAGAAAGGTATACCTGAAGCCTAAAAGCCTTCC  300

seq1  CACATACATGACACCCAAAGGCTTTCTCACTGGAATGAATACTCTGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATGACACCCAAAGGCTTTCTCACTGGAATGAATACTCTGGTGT  350

seq1  TGGATATGGTAGGAACCATTACTGAATATCTTTCCACACTGTTTACACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGGTAGGAACCATTACTGAATATCTTTCCACACTGTTTACACTC  400

seq1  AAATGATTTCTTTCCATTATGAATGTTCTGAGGCTGAGTGATGAGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTCTTTCCATTATGAATGTTCTGAGGCTGAGTGATGAGCTGTG  450

seq1  CTAGAACAGTGAAGGCACTGCCACATTCTTTACACTGAAAGGGTTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAGTGAAGGCACTGCCACATTCTTTACACTGAAAGGGTTTCTTG  500

seq1  TCATAATGAACTTTCTGATGTCGCATGAAGTTTGAGCGCCGATTAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGAACTTTCTGATGTCGCATGAAGTTTGAGCGCCGATTAAAGGC  550

seq1  TTTCCCACATTCATTACATTCATATGGTTTCACACCAGCATGAATAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACATTCATTACATTCATATGGTTTCACACCAGCATGAATAATCT  600

seq1  TATGTTGAACAAGGCTGGAGCCATGCTTGAAAAATTTACCACATTCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGAACAAGGCTGGAGCCATGCTTGAAAAATTTACCACATTCATTA  650

seq1  CATTCAAAAGGTCTCTCACCACTGTGAGCTTTCTGATGTCTTGTAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAAAGGTCTCTCACCACTGTGAGCTTTCTGATGTCTTGTAAGATG  700

seq1  CTGTTGTAATCTGAAGGCCTTCCCACAATCCTTACATTCATAGGGCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTAATCTGAAGGCCTTCCCACAATCCTTACATTCATAGGGCTTCT  750

seq1  CTCCAGTGTGAACACTATGATGCTGTATAAGAGTTGACCTACAACCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGTGAACACTATGATGCTGTATAAGAGTTGACCTACAACCAAAG  800

seq1  TACTTCCCATACTCTTTACATTCATATTCATTGTCTGTATTGTGAGTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCCATACTCTTTACATTCATATTCATTGTCTGTATTGTGAGTTAG  850

seq1  AGTGTGGCAGGTATAAGTGAGCA-TTTTTTCCTTGTTACTAATCTTTTGA  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTGTGGCAGGTATAAGTGAGCATTTTTTTCCTTGTTACTAATCTTTTGA  900

seq1  TCAACATCTCCTTGACAACCCTGTAGTCCCGTGAATGTACTATAGCTGT-  948
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAACATCTCCTTGACAACCCTGTAGTCCCGTGAATGTACTATAGCTGTG  950

seq1  GGCCATTACTAAAACT-GGAGCCCTTGAGTTCAAAAGTTTCACTTATATG  997
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  GGCCATTACTAAAACTGGGAGCCCTTGAGTTCAAAAGGTTCACTTATATG  1000

seq1  CTTTAT-GGTCTGTTTGGGTAAATTTATAGTATATAT-GTGGTTGTCTGG  1045
      |||||| ||||||||| |||||||||||||||||||| ||||||||||||
seq2  CTTTATGGGTCTGTTT-GGTAAATTTATAGTATATATGGTGGTTGTCTGG  1049

seq1  AG-ATATTTG-TTGAGC-TTCATAATCTGATTCCAAATCTGAAAAAAAAA  1092
      || ||||||| |||||| |||||| ||||  ||| |||||| ||||||||
seq2  AGAATATTTGTTTGAGCTTTCATATTCTGGATCC-AATCTG-AAAAAAAA  1097

seq1  GAAGAAAACAAGAGCATTTTATTTTTCTGTATACAAAAT  1131
      |||| ||||||||||||||   |||||  ||||||||||
seq2  GAAG-AAACAAGAGCATTT--ATTTTCGTTATACAAAAT  1133

seq1: chr7_28906247_28907268
seq2: B6Ng01-335E20.g_67_1092 (reverse)

seq1  GATGGATGGTTAGAGGCATGGATG----GATGGATGGATGGATGGATGGA  46
      |||||||| |  || | |||||||    |   ||||||||||||||||||
seq2  GATGGATGAT--GATGGATGGATGTAGAGCATGATGGATGGATGGATGGA  48

seq1  TG--GATG--GGAGAAGAGGTATAAAGGTGGAGAGAGAAAGACAAGAAGA  92
      ||  ||||  |||||||||||||||||||||||||||||||||||| |||
seq2  TGATGATGATGGAGAAGAGGTATAAAGGTGGAGAGAGAAAGACAAG-AGA  97

seq1  CTCTGGCCTCACCGTTTATAAGCCTGGTGAGTCGCCCAGTCTCTCTCTGA  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCTCACCGTTTATAAGCCTGGTGAGTCGCCCAGTCTCTCTCTGA  147

seq1  CTTGGTTTCATCACCTTTAAACCGGAGGAGGGCTAATGTTTTCTCATAGA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTCATCACCTTTAAACCGGAGGAGGGCTAATGTTTTCTCATAGA  197

seq1  GTTAGAGTGAGGACTTAATTCCCTTAATTCCTGAATCCAATCAAGAAGGC  242
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTGAGGAC-TAATTCCCTTAATTCCTGAATCCAATCAAGAAGGC  246

seq1  AAAAGTGAATGAAGTTGATAGAGACCACTGGAGGCCAAGTGGAAATCACA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAATGAAGTTGATAGAGACCACTGGAGGCCAAGTGGAAATCACA  296

seq1  TATGCAAAGCAGGCGGCTGTCAAACACTGCCGCTGGCCATTAAGATGACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAGCAGGCGGCTGTCAAACACTGCCGCTGGCCATTAAGATGACA  346

seq1  GAAAATGGATGCACCACTGGCTTTAGTACCATGAAGGACTTTTGCAGCTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGATGCACCACTGGCTTTAGTACCATGAAGGACTTTTGCAGCTT  396

seq1  TTGGTCAACTGGTGTAAGGAAAAACTTGGGAATTAGTCCAAGAAATAAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAACTGGTGTAAGGAAAAACTTGGGAATTAGTCCAAGAAATAAGA  446

seq1  GATGGGACAAGTACAAAAGTTTCTTCCAGAGAGTTTCATTATGAATGAGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACAAGTACAAAAGTTTCTTCCAGAGAGTTTCATTATGAATGAGC  496

seq1  CAGAGTGGTCCTGTGTTTTACCCCTCCACACTCAGCTTCTAGGATGCAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGTCCTGTGTTTTACCCCTCCACACTCAGCTTCTAGGATGCAAG  546

seq1  AACAGAGGAGTTGGAGAGCTGGAGTCAGCTTACAGTCTGAGATGTGAGTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGAGTTGGAGAGCTGGAGTCAGCTTACAGTCTGAGATGTGAGTA  596

seq1  AAGGTGTGTGATGATGAGAGTGGGGTTGGATGGGTGCTGAGGGCAGCGTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGTGATGATGAGAGTGGGGTTGGATGGGTGCTGAGGGCAGCGTG  646

seq1  CGCATGAGGAGGTGCAGCGGCACACGTTTATGGACAGCTTAATGGAAGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGAGGAGGTGCAGCGGCACACGTTTATGGACAGCTTAATGGAAGCT  696

seq1  GGAACTGGAGGATGCTTCGAGTTTTAGTACTACAGAGAGCAAGGTGCAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGAGGATGCTTCGAGTTTTAGTACTACAGAGAGCAAGGTGCAGA  746

seq1  GTTAGAAGCTGGTGGGCAGAAAGTGGCAGGTCTGGAACTGAGGCTCTCAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAGCTGGTGGGCAGAAAGTGGCAGGTCTGGAACTGAGGCTCTCAG  796

seq1  GAGCTAATTCTGTCTAGAGATGAGCAATTTCCAGCAGGCTGGGATCAGGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAATTCTGTCTAGAGATGAGCAATTTCCAGCAGGCTGGGATCAGGG  846

seq1  TCTATCACACTCCACACAGTTCCCAGCATACGGCACAAGTGTGACCATGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCACACTCCACACAGTTCCCAGCATACGGCACAAGTGTGACCATGG  896

seq1  ACATGTCTTCCTTCACCGGCTCTCTTTACAGGATATACGCAGTTGCCATC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTTCCTTCACCGGCTCTCTTTACAGGATATACGCAGTTGCCATC  946

seq1  TAAACTCTGGTGACTCCAGGGCCTCTCTGATCAACGGAAGAGGTGACTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTGGTGACTCCAGGGCCTCTCTGATCAACGGAAGAGGTGACTTC  996

seq1  TCAGAGTTTTAGGGCCACTTTAGAGAATTC  1022
      ||||||||||||||||||||||||||||||
seq2  TCAGAGTTTTAGGGCCACTTTAGAGAATTC  1026