BAC Information

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BAC

Clone NameB6Ng01-335H09
Chromosome7 (Build37)
Map Location 26,083,408 - 26,162,977
singlet/doubletdoublet
Overlap geneEG623131, Tmem145, Megf8, Cnfn
Upstream geneZfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3
Downstream geneLipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335H09.bB6Ng01-335H09.g
ACCGA120683GA120684
length1,111151
definitionB6Ng01-335H09.b B6Ng01-335H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,161,869 - 26,162,977)(26,083,408 - 26,083,558)
sequence
gaattctcaaaaggagttatatccgggcactaaatacacctccattctgc
tcctagttcatcaagtatggatgaccctaggatgaacagcagtcccaagc
cttgtctcagaaacccctttgtcctcctagctcacccaacactcctcctg
cctctaccacttgtctcagcttctgcccgggtccaggctccaccctaggc
tctggagagagccacctcttggtctaatgatatctccagctctggttcct
attctaacctagcccagtcagagctgggctaactagcatccctggcacta
acaccgtcgattttacacacacacacacacacacacacacacacacacac
acacacacacacagcaagagagacagagacagacagacagagagcgttag
ttcagttcctaggtctggctgctgcccacctcctcattgccttacagctc
ccctggtggttatggggacagcatgaatcttctatttccgtacctaagca
tggcaattaatgaacctctaggcctccctgcctttgcacaggctgaaacc
ctctcacaacctctgcgccacctagtactcttccaagagtcagctccagt
gagtggcccctcctctggaaattctttcctaccatggcaaccccgcaaaa
agattcctgtgcctcccccaccccttcacacccttgaccatcaatgcctg
tcgtcccctctgacctgagctccctggagggcagggcccaggtctgactc
atcttgatcaccaaggtccccagcatcaggcctggcacaccagaaagccc
aggaaatgtttaagtaatgagtgggtgagtgagtgagtgagcgctgagtg
agtgaatgacttgggaatcgtgagtgaattcatgacagcaggaaatgaac
ggagggacgtgcaggacaagcaaaggaaggtagaatcaatgggtacattt
ttaaggttgcacatccctgaactcagcttgtcaaggtggcggccctgact
aagctccctcacttctcactacaaggcggctgtttttcccacaaggctgt
acgcaattccaaatactggtcattctggaagggactacctggatcaaccc
agggagagctg
acagagatctacctacctctgactcctgagtgctaagattaaagctgtgt
gccaccaggccaagcccaacactaaggctttgttattgttatttattatt
tatttgttatgtatatgtatatacgtgtgtgtgtgtgtgtgtgtgtgtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_26161869_26162977
seq2: B6Ng01-335H09.b_49_1159 (reverse)

seq1  CAGCTCTCC--TGGTTGGTCCAGGTAAGTCCTTTCCAGAATGACCAGTAT  48
      |||||||||   ||||| ||||||| ||||| ||||||||||||||||||
seq2  CAGCTCTCCCTGGGTTGATCCAGGT-AGTCCCTTCCAGAATGACCAGTAT  49

seq1  TGGGATTTTGCGTACAGCCTGGTGGG-AAAACAGCCGGCCTTGTAGTGGA  97
      | |||  ||||||||||||| ||||| ||||||||| |||||||||| ||
seq2  TTGGA-ATTGCGTACAGCCTTGTGGGAAAAACAGCC-GCCTTGTAGT-GA  96

seq1  GGAGTGAGGGAGCTTAGTCAGGG-CGCCA-CTGGACAAGCTGAGTTCAGG  145
      | ||||||||||||||||||||| ||||| || |||||||||||||||||
seq2  GAAGTGAGGGAGCTTAGTCAGGGCCGCCACCTTGACAAGCTGAGTTCAGG  146

seq1  GATGTGCAACCTTAAAAATGTACCCATTGATTCTACCTTCC-TTGCTTGT  194
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GATGTGCAACCTTAAAAATGTACCCATTGATTCTACCTTCCTTTGCTTGT  196

seq1  CCTGCACGTCCCTCCGTTCATTTCCTGCTGTCATGAATTCACTCACGATT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACGTCCCTCCGTTCATTTCCTGCTGTCATGAATTCACTCACGATT  246

seq1  CCCAAGTCATTCACTCACTCAGCGCTCACTCACTCACTCACCCACTCATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCATTCACTCACTCAGCGCTCACTCACTCACTCACCCACTCATT  296

seq1  ACTTAAACATTTCCTGGGCTTTCTGGTGTGCCAGGCCTGATGCTGGGGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACATTTCCTGGGCTTTCTGGTGTGCCAGGCCTGATGCTGGGGAC  346

seq1  CTTGGTGATCAAGATGAGTCAGACCTGGGCCCTGCCCTCCAGGGAGCTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGATCAAGATGAGTCAGACCTGGGCCCTGCCCTCCAGGGAGCTCA  396

seq1  GGTCAGAGGGGACGACAGGCATTGATGGTCAAGGGTGTGAAGGGGTGGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGGGGACGACAGGCATTGATGGTCAAGGGTGTGAAGGGGTGGGG  446

seq1  GAGGCACAGGAATCTTTTTGCGGGGTTGCCATGGTAGGAAAGAATTTCCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACAGGAATCTTTTTGCGGGGTTGCCATGGTAGGAAAGAATTTCCA  496

seq1  GAGGAGGGGCCACTCACTGGAGCTGACTCTTGGAAGAGTACTAGGTGGCG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGCCACTCACTGGAGCTGACTCTTGGAAGAGTACTAGGTGGCG  546

seq1  CAGAGGTTGTGAGAGGGTTTCAGCCTGTGCAAAGGCAGGGAGGCCTAGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTGTGAGAGGGTTTCAGCCTGTGCAAAGGCAGGGAGGCCTAGAG  596

seq1  GTTCATTAATTGCCATGCTTAGGTACGGAAATAGAAGATTCATGCTGTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAATTGCCATGCTTAGGTACGGAAATAGAAGATTCATGCTGTCC  646

seq1  CCATAACCACCAGGGGAGCTGTAAGGCAATGAGGAGGTGGGCAGCAGCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACCACCAGGGGAGCTGTAAGGCAATGAGGAGGTGGGCAGCAGCCA  696

seq1  GACCTAGGAACTGAACTAACGCTCTCTGTCTGTCTGTCTCTGTCTCTCTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGGAACTGAACTAACGCTCTCTGTCTGTCTGTCTCTGTCTCTCTT  746

seq1  GCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  796

seq1  TAAAATCGACGGTGTTAGTGCCAGGGATGCTAGTTAGCCCAGCTCTGACT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCGACGGTGTTAGTGCCAGGGATGCTAGTTAGCCCAGCTCTGACT  846

seq1  GGGCTAGGTTAGAATAGGAACCAGAGCTGGAGATATCATTAGACCAAGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGTTAGAATAGGAACCAGAGCTGGAGATATCATTAGACCAAGAG  896

seq1  GTGGCTCTCTCCAGAGCCTAGGGTGGAGCCTGGACCCGGGCAGAAGCTGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTCTCCAGAGCCTAGGGTGGAGCCTGGACCCGGGCAGAAGCTGA  946

seq1  GACAAGTGGTAGAGGCAGGAGGAGTGTTGGGTGAGCTAGGAGGACAAAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTGGTAGAGGCAGGAGGAGTGTTGGGTGAGCTAGGAGGACAAAGG  996

seq1  GGTTTCTGAGACAAGGCTTGGGACTGCTGTTCATCCTAGGGTCATCCATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGAGACAAGGCTTGGGACTGCTGTTCATCCTAGGGTCATCCATA  1046

seq1  CTTGATGAACTAGGAGCAGAATGGAGGTGTATTTAGTGCCCGGATATAAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGAACTAGGAGCAGAATGGAGGTGTATTTAGTGCCCGGATATAAC  1096

seq1  TCCTTTTGAGAATTC  1109
      |||||||||||||||
seq2  TCCTTTTGAGAATTC  1111

seq1: chr7_26083408_26083558
seq2: B6Ng01-335H09.g_71_221

seq1  ACAGAGATCTACCTACCTCTGACTCCTGAGTGCTAAGATTAAAGCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCTACCTACCTCTGACTCCTGAGTGCTAAGATTAAAGCTGTGT  50

seq1  GCCACCAGGCCAAGCCCAACACTAAGGCTTTGTTATTGTTATTTATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGGCCAAGCCCAACACTAAGGCTTTGTTATTGTTATTTATTATT  100

seq1  TATTTGTTATGTATATGTATATACGTGTGTGTGTGTGTGTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTATGTATATGTATATACGTGTGTGTGTGTGTGTGTGTGTGTGT  150

seq1  G  151
      |
seq2  G  151