BAC Information

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BAC

Clone NameB6Ng01-335N19
Chromosome7 (Build37)
Map Location 17,243,595 - 17,330,883
singlet/doubletdoublet
Overlap geneCeacam15, EG666641, LOC434127, Ceacam9, Ap2s1
Upstream geneLOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912
Downstream geneSlc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335N19.bB6Ng01-335N19.g
ACCGA120958GA120959
length6941,045
definitionB6Ng01-335N19.b B6Ng01-335N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,243,595 - 17,244,285)(17,329,842 - 17,330,883)
sequence
gaattccaggacagccagacctacacagagaaactctgtttcaagccctt
cccccatacagacaccgaagtgttctatatctcatttcaatatccagtat
cttacctgtgggctcttttagaataaaaaacaagctattacattcaatta
caagagcaagtatcaagtcataaacacaatcacacctaagcagaactgaa
atctctgagtgtagctcagatcctgtacctccgtggctttcatgtgagac
tcactcatgatgtcctgggcgccaccgtacactgggagtccccgtctcca
tgtttgccttctgcaacccacacagctgcctcactgactcaggctagttc
ccttccacacctgttgtccttgttatttatctgatggttctgacacctcc
aacaagcctgggtctccactgcaactgagacttcactttcaccaatggct
tcctccctctcttctaggaaaggctgaccaaaaggaacttggggagataa
aggatctattccaccttacatcccatcattgggggaggctggggcagaat
ctccaggtgagaacgtgctctgataagtgctctgataagtgattttagat
gtcaccatgtttcttttcttttctttcttttctttcttttctttcttttc
ttctctctctctctctctctctctctctctctctctctctcaca
gaattcagtgcctgtgtcacaggcatacaccgcggtggtagggttccagg
catacatggcagtagtagggttccaggcatgcactgtggtggtagggtta
caggcatgcactgcggtagtagggttccaggcatgcactgcggtggtagg
gttccaggcatgcactgcggtggtagggttccaggcatgcactgggtggt
agggttccaggcatgcactgggtggtagggttccaggcatgcactgggtg
gtagggttccaggcatgcactgggtggtagggttccaggcatggactgca
atgttagagttgcaagcatgcacttttcctcaagacagtatctatgtagc
ccatcttggacataaactcaccatgtaactgaggaaccccccctctgcct
ctgcctctcaagtgttggatcagaggcaggcaccaccaccccatgtgatg
tggctctggcttccagccctgcacttcatgcattctgggtaagcacttta
ccaactgagccatatcctcagccttccatgcaactttccttttacagaca
gggtttcaatgtgcagctctggctggctagaaactctatggagaccaggc
tagccttgaactcagacagctgcctgcttctacctcccggatgctgggac
taagggtgtgagccatcagtcccagtactcactaagtttcttaaaattat
tagcaatgtcactattcatagctcagacttagcatgtggctgacttcaag
tggcatctgctcaatgttatctcggttcaaggcagcaccagggacaccat
gagacaggctcagcttctctaacaggctttaaagtgcgatggggggtcct
gagctgtcctttagatggtaaaggacctgggatggtatggcgtgcacttg
ggtctgtgctttcttcactgttccagcgagttcctgagcctgggtaccaa
ggacatgctgaaacccattccatcccttcccagcttctcttgtcccaaca
cttccctcgtgcttctcacccctcaacatgctctcttttgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17243595_17244285
seq2: B6Ng01-335N19.b_50_740

seq1  GAATTCCAGGACAGCCAGACCTACACAGAGAAACTCTGTTTCAAGCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGACCTACACAGAGAAACTCTGTTTCAAGCCCTT  50

seq1  CCCCCATACAGACACCGAAGTGTTCTATATCTCATTTCAATATCCAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATACAGACACCGAAGTGTTCTATATCTCATTTCAATATCCAGTAT  100

seq1  CTTACCTGTGGGCTCTTTTAGAATAAAAAACAAGCTATTACATTCAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGTGGGCTCTTTTAGAATAAAAAACAAGCTATTACATTCAATTA  150

seq1  CAAGAGCAAGTATCAAGTCATAAACACAATCACACCTAAGCAGAACTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAAGTATCAAGTCATAAACACAATCACACCTAAGCAGAACTGAA  200

seq1  ATCTCTGAGTGTAGCTCAGATCCTGTACCTCCGTGGCTTTCATGTGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAGTGTAGCTCAGATCCTGTACCTCCGTGGCTTTCATGTGAGAC  250

seq1  TCACTCATGATGTCCTGGGCGCCACCGTACACTGGGAGTCCCCGTCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCATGATGTCCTGGGCGCCACCGTACACTGGGAGTCCCCGTCTCCA  300

seq1  TGTTTGCCTTCTGCAACCCACACAGCTGCCTCACTGACTCAGGCTAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTTCTGCAACCCACACAGCTGCCTCACTGACTCAGGCTAGTTC  350

seq1  CCTTCCACACCTGTTGTCCTTGTTATTTATCTGATGGTTCTGACACCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACACCTGTTGTCCTTGTTATTTATCTGATGGTTCTGACACCTCC  400

seq1  AACAAGCCTGGGTCTCCACTGCAACTGAGACTTCACTTTCACCAATGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCTGGGTCTCCACTGCAACTGAGACTTCACTTTCACCAATGGCT  450

seq1  TCCTCCCTCTCTTCTAGGAAAGGCTGACCAAAAGGAACTTGGGGAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTCTCTTCTAGGAAAGGCTGACCAAAAGGAACTTGGGGAGATAA  500

seq1  AGGATCTATTCCACCTTACATCCCATCATTGGGGGAGGCTGGGGCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTATTCCACCTTACATCCCATCATTGGGGGAGGCTGGGGCAGAAT  550

seq1  CTCCAGGTGAGAACGTGCTCTGATAAGTGCTCTGATAAGTGATTTTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTGAGAACGTGCTCTGATAAGTGCTCTGATAAGTGATTTTAGAT  600

seq1  GTCACCATGTTTCTTTTCTTTTCTTTCTTTTCTTTCTTTTCTTTCTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATGTTTCTTTTCTTTTCTTTCTTTTCTTTCTTTTCTTTCTTTTC  650

seq1  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  691
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  691

seq1: chr7_17329842_17330883
seq2: B6Ng01-335N19.g_70_1114 (reverse)

seq1  ACACACACAAAGAGAGCAGGTTG-GGGGTGAGAAGCACGAGGGAGGTGTT  49
      ||||||| |||||||||| |||| |||||||||||||||||||| |||||
seq2  ACACACA-AAAGAGAGCATGTTGAGGGGTGAGAAGCACGAGGGAAGTGTT  49

seq1  GGGAC-AGAGAGGCTGGGGAAGGGAATGGAATGGGGTTTCAGCATGTCCT  98
      ||||| ||||| ||| |||||||| ||||||| |||||||||||||||||
seq2  GGGACAAGAGAAGCT-GGGAAGGG-ATGGAAT-GGGTTTCAGCATGTCCT  96

seq1  GGGTACCCAGGCTCAGGAACTCGCTGGAACAGTGAAG-AAGCACAGA-CC  146
       |||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  TGGTACCCAGGCTCAGGAACTCGCTGGAACAGTGAAGAAAGCACAGACCC  146

seq1  AAGTGCACGCCATACCATCCCAGGTCC-TTACCATCT-AAGGACAGCTCA  194
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  AAGTGCACGCCATACCATCCCAGGTCCTTTACCATCTAAAGGACAGCTCA  196

seq1  GGA-CCCCCATCGCACTTT-AAGCCTGTTAGAGAAGCTGAGCCTGTCTCA  242
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGACCCCCCATCGCACTTTAAAGCCTGTTAGAGAAGCTGAGCCTGTCTCA  246

seq1  TGGTGTCCCTGGTGCTGCCTTGAACCGAGATAACATTGAGCAGATGCCAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCCTGGTGCTGCCTTGAACCGAGATAACATTGAGCAGATGCCAC  296

seq1  TTGAAGTCAGCCACATGCTAAGTCCTGAGCTATGAATAGTGACATTGCTA  342
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGAAGTCAGCCACATGCTAAGT-CTGAGCTATGAATAGTGACATTGCTA  345

seq1  ATAATTTTAAGAAACTTAGTGAGTACTGGGACTGATGGCTCACACCCTTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTAAGAAACTTAGTGAGTACTGGGACTGATGGCTCACACCCTTA  395

seq1  GTCCCAGCATCCGGGAGGTAGAAGCAGGCAGCTGTCTGAGTTCAAGGCTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCATCCGGGAGGTAGAAGCAGGCAGCTGTCTGAGTTCAAGGCTA  445

seq1  GCCTGGTCTCCATAGAGTTTCTAGCCAGCCAGAGCTGCACATTGAAACCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTCCATAGAGTTTCTAGCCAGCCAGAGCTGCACATTGAAACCC  495

seq1  TGTCTGTAAAAGGAAAGTTGCATGGAAGGCTGAGGATATGGCTCAGTTGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTAAAAGGAAAGTTGCATGGAAGGCTGAGGATATGGCTCAGTTGG  545

seq1  TAAAGTGCTTACCCAGAATGCATGAAGTGCAGGGCTGGAAGCCAGAGCCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGCTTACCCAGAATGCATGAAGTGCAGGGCTGGAAGCCAGAGCCA  595

seq1  CATCACATGGGGTGGTGGTGCCTGCCTCTGATCCAACACTTGAGAGGCAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATGGGGTGGTGGTGCCTGCCTCTGATCCAACACTTGAGAGGCAG  645

seq1  AGGCAGAGGGGGGGTTCCTCAGTTACATGGTGAGTTTATGTCCAAGATGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGGGGGGTTCCTCAGTTACATGGTGAGTTTATGTCCAAGATGG  695

seq1  GCTACATAGATACTGTCTTGAGGAAAAGTGCATGCTTGCAACTCTAACAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATAGATACTGTCTTGAGGAAAAGTGCATGCTTGCAACTCTAACAT  745

seq1  TGCAGTCCATGCCTGGAACCCTACCACCCAGTGCATGCCTGGAACCCTAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCATGCCTGGAACCCTACCACCCAGTGCATGCCTGGAACCCTAC  795

seq1  CACCCAGTGCATGCCTGGAACCCTACCACCCAGTGCATGCCTGGAACCCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGCATGCCTGGAACCCTACCACCCAGTGCATGCCTGGAACCCT  845

seq1  ACCACCCAGTGCATGCCTGGAACCCTACCACCGCAGTGCATGCCTGGAAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCAGTGCATGCCTGGAACCCTACCACCGCAGTGCATGCCTGGAAC  895

seq1  CCTACCACCGCAGTGCATGCCTGGAACCCTACTACCGCAGTGCATGCCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCACCGCAGTGCATGCCTGGAACCCTACTACCGCAGTGCATGCCTG  945

seq1  TAACCCTACCACCACAGTGCATGCCTGGAACCCTACTACTGCCATGTATG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTACCACCACAGTGCATGCCTGGAACCCTACTACTGCCATGTATG  995

seq1  CCTGGAACCCTACCACCGCGGTGTATGCCTGTGACACAGGCACTGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACCCTACCACCGCGGTGTATGCCTGTGACACAGGCACTGAATTC  1045