BAC Information

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BAC

Clone NameB6Ng01-336O10
Chromosome6 (Build37)7 (Build37)
Map Location 124,598,836 - 124,599,19092,154,464 - 92,155,676
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677
Downstream geneMboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336O10.bB6Ng01-336O10.g
ACCGA121685GA121686
length1,0691,185
definitionB6Ng01-336O10.b B6Ng01-336O10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,598,836 - 124,599,190)(92,154,464 - 92,155,676)
sequence
gaattcaggtgtttcctcaattctttacatctaatgccagattttaagcc
ttaatggaactcgaataggacccatcattgttggcaatttttcctcttgg
cttacctctgctttttcttactttaaggaatgggtgggagtgtttttgtt
tggtgctgccatatgctgtggactggtgttcatgctctggttggtatgga
aattcagaacccaacaaaaacgtgtcaaggtgattataactcaggcactt
ttagctattgaaaatggcgcctcccctgaagtttggttatctatgctcaa
gaattagtcggcatctgagttctctgctcttgcaccccaaggatttatgg
atccattgcactgggatgagagagactcaaggatcattgatcagcccttg
cacatcgctgagttttcctcattgcacgtgatagggtgatcatgatttcc
ccactaattcatttttaaaacttggctggcctcttttgtagagttcaccc
taggtcatttagcagttactgtcacacagcaccgtggtatccagagacgg
gcaactttcctcatgcacagaccaacctaagacatggggccctgtggtga
tagggttaccctatgacgggtaaggctgtgacattagaggaacgacctaa
aacaggagccacggcggatggacataattgcacaggcctagtccagcctc
attttattaaaacaaaaggggggagatgtgggaagccacatgtgccgttg
cagggtgccttggcttctgctggccaccatgcatacattggctgtaaagt
ttttttttgccaagatgaggttttgagaattaaccaaaattaaccaatca
gatgagagacaagttaaccaatcagatgagagacaagttaaccaatcata
tgtaggcatacaaatgaggtggtaagcataacccgtgcataaccaattct
gggtgtgagacacgcctctcctaggcctatataagcagcaccagtctggg
cttggggtctctcgctctgcaatcaagctctcccaataaaacatgtgcag
aaggatcctgttgcagtgt

gaattcaattcctttctgaattaagaggagaaatgcaaaaacacattgtc
tgtttatcagttgcaattattatccaaactgagaagatcatggcccttaa
agagtttcatacgcattacaaccaaattataatgtcatcagcaaaagttg
tgatagtttatggagacaaagactctcctatacattttgccctcattgtg
tggaaatctaaaggcatttggagaatctgggttagtgtctcacaatttga
tatgatcacaattataggagatttcttgctatactcctccatagggactt
tcattttttcacaccagcaacctgaaatacctggttttgagcaatttatc
caaacagtacacccttcaaactacagtagtgaacattcccttgccaaact
atggtggacgtattttagatgttctttgccaccatctaattgtaagaagc
tgaagaattgtccaaccacaactgtatttaaatggttattcatgacacca
cttggaatggccatgagtaatacatgctataatttatataatggtgtgta
tgctgtggccctctcactccatgagatgattctgcaacaagtagacacat
ggtcaatgaatgctgggaaggaactggaatttgactcttggaaggtaatg
agtcttaacactaaatggcatttatatggtttgaattctttaataaaact
acatggtcttaagccatgtcaataagttattttacccatagatatatata
gttctgtactctattattgcataagtggcatctcatgttagtgtcataaa
ttatgacagagtcaacactggtgtacaagtcagaattcacaatctaagtc
atgcatttttgtccagatattgaaaccacatatgtgactcgcatattaat
tttttctcatgaaatttttaaaaatcagtaagaaaatgacttgtctatta
tgtattcaaaagttgctgaccaatttactgaaagatcccaaagatatcag
gtacttttccattaatttgctatatatatctatcccattgcctgtgatca
ataacactattgcagaaacaaaaacagagactgcattttctcaatataaa
aaaccaagatttgttagagtaccaatgcaggaagaaatttatagtaagac
gttgaaatatatttacacctaccatgattttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124598836_124599190
seq2: B6Ng01-336O10.b_771_1114 (reverse)

seq1  ACACTGCAACAGGATC----------------------------------  16
      ||||||||||||||||                                  
seq2  ACACTGCAACAGGATCCTTCTGCACATGTTTTATTGGGAGAGCTTGATTG  50

seq1  -------TGAGACCCTGAGCCCAGAACTGGTGCTGCTTATATAGCCCTAG  59
              |||||||  ||||||| ||||||||||||||||||| |||||
seq2  CAGAGCGAGAGACCCCAAGCCCAG-ACTGGTGCTGCTTATATAGGCCTAG  99

seq1  GAGAGGCGTGTCTCACACCC-GGATTGGTTATGCAC----TAAG------  98
      |||||||||||||||||||| | |||||||||||||    || |      
seq2  GAGAGGCGTGTCTCACACCCAGAATTGGTTATGCACGGGTTATGCTTACC  149

seq1  -CCTCATTTGCATGTTCCT-CATCTGATTGGCTACTCTCTCTCTC-TCTG  145
       ||||||||| |||  ||| ||| ||||||| ||   | |||||| ||||
seq2  ACCTCATTTGTATG--CCTACATATGATTGGTTAACTTGTCTCTCATCTG  197

seq1  TACCTCACAGAGCCTCATTATCATACCTCATTTGCATGTCTCACATCTGA  195
                            ||   |  ||  | |||||| |||||||
seq2  ----------------------AT---TGGTTAACTTGTCTCTCATCTGA  222

seq1  TTGGTTA---------TACTCTCAAAGCCTCATTATCATGCCCGGGCCAG  236
      |||||||          | ||||||| ||||||             |  |
seq2  TTGGTTAATTTTGGTTAATTCTCAAAACCTCAT-------------CTTG  259

seq1  GCAGTGTCTTTGCAAAAAACTTTACTGCATATGTACACATTGGTTGTTTG  286
      |||          |||||||||||| ||  |||                 
seq2  GCA--------AAAAAAAACTTTACAGCCAATG-----------------  284

seq1  TCCAAACTTATGCGTGGTGGCCAGCAGTAGTCAGCGCCACACTGCAACGG  336
              ||||| ||||||||||||| || ||  | ||| |||||||||
seq2  --------TATGCATGGTGGCCAGCAGAAGCCA-AGGCACCCTGCAACGG  325

seq1  CACATGTGGCTTCCCACAT  355
      |||||||||||||||||||
seq2  CACATGTGGCTTCCCACAT  344


seq1: chr7_92154464_92155676
seq2: B6Ng01-336O10.g_65_1249 (reverse)

seq1  AAATAAAAATCAT-GTAGGTGTAAATATATCTCCACTGTCTTTACTAATA  49
      |||| |||||||| |||||||||||||||| || || ||| ||||| |||
seq2  AAAT-AAAATCATGGTAGGTGTAAATATATTTCAAC-GTC-TTACT-ATA  46

seq1  AAATTTTCTTCCTGCATTTGGTACTCTAAAACCTATAATCCTGGTTTTTA  99
      ||  |||||||||||| |||||||||||| |     |||| |||||||| 
seq2  AA--TTTCTTCCTGCA-TTGGTACTCTAACA-----AATCTTGGTTTTT-  87

seq1  TATTTGGAGAAAAATGGCATGTTCTCTGTTTTTTGTTTTCTGCCAATAGT  149
      ||| | |||||||   |||   |||||||||||   |||||| |||||||
seq2  TATATTGAGAAAA--TGCA--GTCTCTGTTTTT--GTTTCTG-CAATAGT  130

seq1  GTTATTTGATCACAGGCAATGGGATAGATATTATTAATA-AGCAAAATTA  198
      |||| ||||||||||||||||||||||||||     ||| ||| ||||||
seq2  GTTA-TTGATCACAGGCAATGGGATAGATAT-----ATATAGC-AAATTA  173

seq1  ATGGAAAAGTACCTGATATTCTTTGGGATCTTTTCAGTAAATTGGTCAGC  248
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  ATGGAAAAGTACCTGATA-TCTTTGGGATC-TTTCAGTAAATTGGTCAGC  221

seq1  AACTTTTGAATAACATAATAGACAAGTCATTTTCTTACTGATTTTTAAAA  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGAAT-ACATAATAGACAAGTCATTTTCTTACTGATTTTTAAAA  270

seq1  ATTTCATGAGAAAAAATTAATATGCGAGTCACATATGTGGTTTCAATATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGAGAAAAAATTAATATGCGAGTCACATATGTGGTTTCAATATC  320

seq1  TGGACAAAAATGCATGACTTAGATTGTGAATTCTGACTTGTACACCAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAAATGCATGACTTAGATTGTGAATTCTGACTTGTACACCAGTG  370

seq1  TTGACTCTGTCATAATTTATGACACTAACATGAGATGCCACTTATGCAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTGTCATAATTTATGACACTAACATGAGATGCCACTTATGCAAT  420

seq1  AATAGAGTACAGAACTATATATATCTATGGGTAAAATAACTTATTGACAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTACAGAACTATATATATCTATGGGTAAAATAACTTATTGACAT  470

seq1  GGCTTAAGACCATGTAGTTTTATTAAAGAATTCAAACCATATAAATGCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAGACCATGTAGTTTTATTAAAGAATTCAAACCATATAAATGCCA  520

seq1  TTTAGTGTTAAGACTCATTACCTTCCAAGAGTCAAATTCCAGTTCCTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTTAAGACTCATTACCTTCCAAGAGTCAAATTCCAGTTCCTTCC  570

seq1  CAGCATTCATTGACCATGTGTCTACTTGTTGCAGAATCATCTCATGGAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCATTGACCATGTGTCTACTTGTTGCAGAATCATCTCATGGAGT  620

seq1  GAGAGGGCCACAGCATACACACCATTATATAAATTATAGCATGTATTACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGCCACAGCATACACACCATTATATAAATTATAGCATGTATTACT  670

seq1  CATGGCCATTCCAAGTGGTGTCATGAATAACCATTTAAATACAGTTGTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCATTCCAAGTGGTGTCATGAATAACCATTTAAATACAGTTGTGG  720

seq1  TTGGACAATTCTTCAGCTTCTTACAATTAGATGGTGGCAAAGAACATCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAATTCTTCAGCTTCTTACAATTAGATGGTGGCAAAGAACATCTA  770

seq1  AAATACGTCCACCATAGTTTGGCAAGGGAATGTTCACTACTGTAGTTTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACGTCCACCATAGTTTGGCAAGGGAATGTTCACTACTGTAGTTTGA  820

seq1  AGGGTGTACTGTTTGGATAAATTGCTCAAAACCAGGTATTTCAGGTTGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTACTGTTTGGATAAATTGCTCAAAACCAGGTATTTCAGGTTGCT  870

seq1  GGTGTGAAAAAATGAAAGTCCCTATGGAGGAGTATAGCAAGAAATCTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAAAAAATGAAAGTCCCTATGGAGGAGTATAGCAAGAAATCTCCT  920

seq1  ATAATTGTGATCATATCAAATTGTGAGACACTAACCCAGATTCTCCAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTGATCATATCAAATTGTGAGACACTAACCCAGATTCTCCAAAT  970

seq1  GCCTTTAGATTTCCACACAATGAGGGCAAAATGTATAGGAGAGTCTTTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGATTTCCACACAATGAGGGCAAAATGTATAGGAGAGTCTTTGT  1020

seq1  CTCCATAAACTATCACAACTTTTGCTGATGACATTATAATTTGGTTGTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAAACTATCACAACTTTTGCTGATGACATTATAATTTGGTTGTAA  1070

seq1  TGCGTATGAAACTCTTTAAGGGCCATGATCTTCTCAGTTTGGATAATAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTATGAAACTCTTTAAGGGCCATGATCTTCTCAGTTTGGATAATAAT  1120

seq1  TGCAACTGATAAACAGACAATGTGTTTTTGCATTTCTCCTCTTAATTCAG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGATAAACAGACAATGTGTTTTTGCATTTCTCCTCTTAATTCAG  1170

seq1  AAAGGAATTGAATTC  1213
      |||||||||||||||
seq2  AAAGGAATTGAATTC  1185


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