BAC Information

Click to search

BAC

Clone NameB6Ng01-337E22
Chromosome7 (Build37)X (Build37)
Map Location 39,353,972 - 39,355,05395,391,402 - 95,391,645
singlet/doubletsingletsinglet
Overlap geneLOC100043467
Upstream geneZfp536, LOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337E22.bB6Ng01-337E22.g
ACCGA121976GA121977
length1,074192
definitionB6Ng01-337E22.b B6Ng01-337E22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,353,972 - 39,355,053)(95,391,402 - 95,391,645)
sequence
gaattcaaggccacagtgagtagcatccatcctttattaaatgatatccg
tggagcacaccatagtcacacatgtaactaactacacagaataatcagtc
ctatccaccaatacactgcaatagaccccttcctgacctatcattgacct
tgtgtctagaagacactgaggaaatgttttggtaacatgggattttccat
gagttgaaatcctccagagcaatgtagctcagaatctgtcctggaggaag
aattcctcccagattctcagcacctgttccggaaatttctgacacttaaa
attatagagagtatggcatagtcaaagtaccatttctaatttggctaagc
ctgctcgttttttatttgtttgtttgttttgtttttcttttgctgtagta
ctgcagaggtaacccatgtccaagaacataacatcatgtagacatgttct
ctactactgagtctcacccaagcccaacaattttaaattctcattccatt
ttccattccacttataagattgtgagacatggggtgggagaaaatcgttg
gttgtttaaatgcttgccttgcaggagtgcctaggtgggtttggatacct
aaacctacataaaagacaagattctggggtcatgtgagtaaggacattat
tcaaagggtcaggtaagtttttggaaattatggaccagacaacctaccta
gtagcaaagttccacaaacatgagaggcactcttaataaagacaaagggg
aaggaaagtaaggagcacacgtccaggtaatttggtaactgacgtactaa
gggttttcctccacaaaccacacaaacaggaaggaaaataaaaatctctg
agaaagcatgacatgcaatggtctgcagaaacagagcagtcaccatcggt
ctgcccacagaggtagcatccaagctcttcatcaagagctcataggaatg
tcctcccactgctgcaggggccaaatgctgtgtctatgaatggggttggg
ggtggggagcatctcatttactggagcactgactcttccttcactttatt
ccagtgatcatgagacgtccctgg

tttgtttagctctgagccccagtttttaatggggttatttgattttctgg
agtccaccttcttgagttctttatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_39353972_39355053
seq2: B6Ng01-337E22.b_51_1124 (reverse)

seq1  CCAGGGACGTCTCCAATTGAACCACTGGAAAAAAGTGAAGGAAGAAGTCA  50
      |||||||||||||  ||   | |||||||| ||||||||||||| |||||
seq2  CCAGGGACGTCTC--AT--GATCACTGGAATAAAGTGAAGGAAG-AGTCA  45

seq1  GTGCCTCCGGTAAATGATATGCTCCCCACCCCCAACCCCATTTCATAGAC  100
      ||| |||| |||||||| |||||||||||||||||||||| |||||||| 
seq2  GTG-CTCCAGTAAATGAGATGCTCCCCACCCCCAACCCCA-TTCATAGA-  92

seq1  CACAGCATTTGGCCCCTGCAGCAGTGGGAGGACATTCCTATGAGCTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATTTGGCCCCTGCAGCAGTGGGAGGACATTCCTATGAGCTCTTG  142

seq1  ATGAAGAGCTTGGATGCTACCTCTGTGGGCAGACCAATGGTGACTGCTCT  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGAAGAGCTTGGATGCTACCTCTGTGGGCAGACCGATGGTGACTGCTCT  192

seq1  GTTTGTGCAGACCATTGCATGTCATGCTTTCTCAGAGATTTTTATTTTCC  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCAGACCATTGCATGTCATGCTTTCTCAGAGATTTTTATTTTCC  242

seq1  TTCCTGTTTGTGTGGTTTGTGGAGGAAAACCCTTAGTACGTCAGTTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTGTGTGGTTTGTGGAGGAAAACCCTTAGTACGTCAGTTACCA  292

seq1  AATTACCTGGACGTGTGCTCCTTACTTTCCTTCCCCTTTGTCTTTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTGGACGTGTGCTCCTTACTTTCCTTCCCCTTTGTCTTTATTAA  342

seq1  GAGTGCCTCTCATGTTTGTGGAACTTTGCTACTAGGTAGGTTGTCTGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCTCTCATGTTTGTGGAACTTTGCTACTAGGTAGGTTGTCTGGTC  392

seq1  CATAATTTCCAAAAACTTACCTGACCCTTTGAATAATGTCCTTACTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTCCAAAAACTTACCTGACCCTTTGAATAATGTCCTTACTCACA  442

seq1  TGACCCCAGAATCTTGTCTTTTATGTAGGTTTAGGTATCCAAACCCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAGAATCTTGTCTTTTATGTAGGTTTAGGTATCCAAACCCACCT  492

seq1  AGGCACTCCTGCAAGGCAAGCATTTAAACAACCAACGATTTTCTCCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTCCTGCAAGGCAAGCATTTAAACAACCAACGATTTTCTCCCACC  542

seq1  CCATGTCTCACAATCTTATAAGTGGAATGGAAAATGGAATGAGAATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTCACAATCTTATAAGTGGAATGGAAAATGGAATGAGAATTTAA  592

seq1  AATAGTTGGGCTTGGGTGAGACTCAGTAGTAGAGAACATGTCTACATGAT  650
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGGGCTTGGGTGAGACTCAGTAGTAGAGAACATGTCTACATGAT  642

seq1  GTTATGTTCTTGGACATGGGTTACCTCTGCAGTACTACAGCAAAAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTCTTGGACATGGGTTACCTCTGCAGTACTACAGCAAAAGAAAA  692

seq1  ACAAAACAAACAAACAAATAAAAAACGAGCAGGCTTAGCCAAATTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAACAAACAAATAAAAAACGAGCAGGCTTAGCCAAATTAGAAA  742

seq1  TGGTACTTTGACTATGCCATACTCTCTATAATTTTAAGTGTCAGAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTTGACTATGCCATACTCTCTATAATTTTAAGTGTCAGAAATTT  792

seq1  CCGGAACAGGTGCTGAGAATCTGGGAGGAATTCTTCCTCCAGGACAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAACAGGTGCTGAGAATCTGGGAGGAATTCTTCCTCCAGGACAGATT  842

seq1  CTGAGCTACATTGCTCTGGAGGATTTCAACTCATGGAAAATCCCATGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTACATTGCTCTGGAGGATTTCAACTCATGGAAAATCCCATGTTA  892

seq1  CCAAAACATTTCCTCAGTGTCTTCTAGACACAAGGTCAATGATAGGTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACATTTCCTCAGTGTCTTCTAGACACAAGGTCAATGATAGGTCAG  942

seq1  GAAGGGGTCTATTGCACTGTATTGGTGGATAGGACTGATTATTCTGTGTA  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAAGGGGTCTATTGCAGTGTATTGGTGGATAGGACTGATTATTCTGTGTA  992

seq1  GTTAGTTACATGTGTGACTATGGTGTGCTCCACGGATATCATTTAATAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTACATGTGTGACTATGGTGTGCTCCACGGATATCATTTAATAAA  1042

seq1  GGATGGATGCTACTCACTGTGGCCTTGAATTC  1082
      ||||||||||||||||||||||||||||||||
seq2  GGATGGATGCTACTCACTGTGGCCTTGAATTC  1074


seq1: chrX_95391402_95391645
seq2: B6Ng01-337E22.g_139_262

seq1  CTTTATATATATATATATATGGGGGGGGTTGTGTGTGTGTATATATATAT  50
      |||||||||||||||||||                    |||||||||||
seq2  CTTTATATATATATATATA--------------------TATATATATAT  30

seq1  GTATATATATATAAATTTGCTTTATATATTTGTCTTGTTTTATATATAAA  100
       ||||||||||||         ||||||            ||||||||  
seq2  ATATATATATATA---------TATATA------------TATATATA--  57

seq1  TTTGCTATATACATACACACACACACACACACACATATATATATGGGGGG  150
           |||||| ||                    |||||||||       
seq2  -----TATATATAT--------------------ATATATATA-------  75

seq1  GTTTTGTGTGTGTGTATATATATATATATATATATATATGTGTGTATATA  200
                | | ||||||||||||||||||||||||| | | ||||||
seq2  ----------TATATATATATATATATATATATATATATATATATATATA  115

seq1  TATATAAATTTGCTTTATATATTTGTCTTGTTTTATATATAAAT  244
      |||||||||                                   
seq2  TATATAAAT-----------------------------------  124


| Home | SequenceCutter | Blast | Download |