BAC Information

Click to search

BAC

Clone NameB6Ng01-338B05
Chromosome7 (Build37)
Map Location 67,633,182 - 67,634,382
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf, EG664849
Downstream geneLOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338B05.bB6Ng01-338B05.g
ACCGA122490GA122491
length7691,191
definitionB6Ng01-338B05.b B6Ng01-338B05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgttcttcatgagctacaccttctttcctgaatataatggagg
aaatttcaataccagagacactaaagtgaaacccctgctttattgaataa
tgaatgctggccattttggtctaaacaatcagttgtgataaagacagacc
agcatcagaagtctctgggaagtgatgcttcagggtcatcatgcagaaac
tgtgttggaaaaatgacaaggtcataagtgcgttccataatgagcttatt
agtgactagattaatcaagtggcactggatatgaaggcatggagacatca
tggacaggcactgtggcatgtaaccatgtggcatggatgggtttcactac
tgttttcagtgaaacccagttgcttcaaggtacctcagtgttttgggtat
gcaagtaccaaagaataaccagcaaaattagcagaagccatggggtcaat
gcagtcataacatagaatactagctctatatttgttgcagagggcagagc
tagaggtgttagttacccagattctttaaaaggtaccaggaaataataag
tgggtcacagatattaatatatcgaggtattaacactgctgaggattgat
ttttgctttgttcacatttttgcttgataatccttccttgaagaaaagga
gtacttaaaaaaacacagaatagacagatgctagatgggtgaggcaggag
ttagtgagttgtaggaggagcactctcatagaggcaaaggggagtgggag
aagggagatgagatggggg

gaattctgaaaactgcctttgaggttataaggaaacctgaactttaacta
gaattgttttctttcagaactagagagaatggatgttttttcttaggatc
ttttttacagacacttgcaggcaaaagaaaaaaaaaaggaaaaaaaagtc
tgagctctgtaagtatattctcttttgtgatcaatttccattaggcttag
gaaggtgttctatttcctattttataaacattctttccttatacaggata
ttcttctagcttctctttcccttcccccatccaacattctaattctctga
aatccaaatgtgtctataatttagtaggttttttttaaatgtaggcacgc
acataggtgatgacaaaaggaaccacaccaaaaaatatggcgttcacacc
tgttgtcataaaaaaattcacatattctccttgtgaattgtcaatttatt
tacaattaattacaataataccatcagtaatcctttccttgtctttcata
gctttaatttgcatgattttagctactcattctttttaatcacattccct
ttttattatttacaatcaataaactggaagaaattacaatcaagaaatgg
gacattcagaataatcaacccaagaagaaagtattagttggaatactaca
gggaaggcaataccaatgagtgagcaagggccatggctgggcagctgtcc
catgttttaggccagtttatcttcagattgtacagtatcagcccatgatg
tgaccagctcaaaggaaggacatattgaagggagtgagattactatacag
cagagaaaggagatgggccatttgcagcatacaactaagtagggggcgat
tttttatggagcccttacatgggggagaatgatatagggacaccctagag
aagagctatgaagaggaagctggagaaggtcctaacacccttcttatgaa
gcacacaggtgctcagtgattacagtgtaaataagttgtttgtcatgaga
acaatcatttatcagcgattagcatgcatcagtagcttgaagtatatagc
ttcttctatttgctgtgactgcactatggatgtggacaagcaatagaaga
tggataatagctcataaataatctgattccaataattaagcctactggct
ggcttgttgtgagattcctctgctaatggtaacacatttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_67633182_67634382
seq2: B6Ng01-338B05.g_64_1254

seq1  GAATTCTGAAAACTGCCTTTGAGGTTATAAGGAAACCTGAACTTTAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAACTGCCTTTGAGGTTATAAGGAAACCTGAACTTTAACTA  50

seq1  GAATTGTTTTCTTTCAGAACTAGAGAGAATGGATGTTTTTTCTTAGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTTTCTTTCAGAACTAGAGAGAATGGATGTTTTTTCTTAGGATC  100

seq1  TTTTTTACAGACACTTGCAGGCAAAAGAAAAAAAAAAGGAAAAAAAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACAGACACTTGCAGGCAAAAGAAAAAAAAAAGGAAAAAAAAGTC  150

seq1  TGAGCTCTGTAAGTATATTCTCTTTTGTGATCAATTTCCATTAGGCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTGTAAGTATATTCTCTTTTGTGATCAATTTCCATTAGGCTTAG  200

seq1  GAAGGTGTTCTATTTCCTATTTTATAAACATTCTTTCCTTATACAGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTTCTATTTCCTATTTTATAAACATTCTTTCCTTATACAGGATA  250

seq1  TTCTTCTAGCTTCTCTTTCCCTTCCCCCATCCAACATTCTAATTCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTAGCTTCTCTTTCCCTTCCCCCATCCAACATTCTAATTCTCTGA  300

seq1  AATCCAAATGTGTCTATAATTTAGTAGGTTTTTTTTAAATGTAGGCACGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAATGTGTCTATAATTTAGTAGGTTTTTTTTAAATGTAGGCACGC  350

seq1  ACATAGGTGATGACAAAAGGAACCACACCAAAAAATATGGCGTTCACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGTGATGACAAAAGGAACCACACCAAAAAATATGGCGTTCACACC  400

seq1  TGTTGTCATAAAAAAATTCACATATTCTCCTTGTGAATTGTCAATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCATAAAAAAATTCACATATTCTCCTTGTGAATTGTCAATTTATT  450

seq1  TACAATTAATTACAATAATACCATCAGTAATCCTTTCCTTGTCTTTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTAATTACAATAATACCATCAGTAATCCTTTCCTTGTCTTTCATA  500

seq1  GCTTTAATTTGCATGATTTTAGCTACTCATTCTTTTTAATCACATTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATTTGCATGATTTTAGCTACTCATTCTTTTTAATCACATTCCCT  550

seq1  TTTTATTATTTACAATCAATAAACTGGAAGAAATTACAATCAAGAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATTTACAATCAATAAACTGGAAGAAATTACAATCAAGAAATGG  600

seq1  GACATTCAGAATAATCAACCCAAGAAGAAAGTATTAGTTGGAATACTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCAGAATAATCAACCCAAGAAGAAAGTATTAGTTGGAATACTACA  650

seq1  GGGAAGGCAATACCAATGAGTGAGCAAGGGCCATGGCTGGGCAGCTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCAATACCAATGAGTGAGCAAGGGCCATGGCTGGGCAGCTGTCC  700

seq1  CATGTTTTAGGCCAGTTTATCTTCAGATTGTACAGTATCAGCCCATGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTAGGCCAGTTTATCTTCAGATTGTACAGTATCAGCCCATGATG  750

seq1  TGACCAGCTCAAAGGAAGGACATATTGAAGGGAGTGAGATTACTATACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGCTCAAAGGAAGGACATATTGAAGGGAGTGAGATTACTATACAG  800

seq1  CAGAGAAAGGAGATGGGCCATTTGCAGCATACAACTAAGTAGGGGGCGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGGAGATGGGCCATTTGCAGCATACAACTAAGTAGGGGGCGAT  850

seq1  TTTTTATGGAGCCCTTACATGGGGGAGAATGATATAGGGACACCCTAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGGAGCCCTTACATGGGGGAGAATGATATAGGGACACCCTAGAG  900

seq1  AAGAGCTATGAAGAGGAAGCTGGAGAAGGTCCTAACACCCTTCTTATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTATGAAGAGGAAGCTGGAGAAGGTCCTAACACCCTTCTTATGAA  950

seq1  GCCACACAGGTGCTCAGTGATTACAGTGTAAATAAAGTTGTTTTGTCATG  1000
      | ||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  G-CACACAGGTGCTCAGTGATTACAGTGTAAAT-AAGTTG-TTTGTCATG  997

seq1  AG-ACAATCATTTTATCCAGCGATTAGCATTGCATCAGTAGCCTGAAGTA  1049
      || ||||||| ||||| |||||||||||| |||||||||||| |||||||
seq2  AGAACAATCA-TTTAT-CAGCGATTAGCA-TGCATCAGTAGCTTGAAGTA  1044

seq1  TATAGCCTTCTTCTATTTTGCTTGTGAACTGCACTAT-GATGT-GACAAG  1097
      ||||| ||||||||| ||||| |||| |||||||||| ||||| ||||||
seq2  TATAG-CTTCTTCTA-TTTGC-TGTG-ACTGCACTATGGATGTGGACAAG  1090

seq1  CAATAAGAGAATTGATTAATAGTCTCATTAAATTATCTGATTTCAAT-AT  1146
      |||||  |||  ||  |||||| |||| ||||| |||||||| |||| ||
seq2  CAATAGAAGA--TGGATAATAG-CTCA-TAAATAATCTGATTCCAATAAT  1136

seq1  TAAGCCTTACTGGCCTGGCTTGTT-TGTAGTATCTCTGCTAATTGTAA-A  1194
      |||||| |||||| |||||||||| ||   |  |||||||||| |||| |
seq2  TAAGCC-TACTGG-CTGGCTTGTTGTGAGATTCCTCTGCTAATGGTAACA  1184

seq1  CATTTGG  1201
      |||||||
seq2  CATTTGG  1191


| Home | SequenceCutter | Blast | Download |