BAC Information

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BAC

Clone NameB6Ng01-338J03
Chromosome7 (Build37)
Map Location 105,602,431 - 105,603,584
singlet/doubletsinglet
Overlap geneGucy2d
Upstream geneKctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269
Downstream geneLOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338J03.bB6Ng01-338J03.g
ACCGA122830GA122831
length1,158156
definitionB6Ng01-338J03.b B6Ng01-338J03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggtacctgggataagctagctgtgacttgggccttcagaagag
acgtgagatgaggcccactgtggtcccagccctctgctctgatccctagg
gaactggctcctccatacagcctcacctgcagcctgctggctattgtgtt
ttgtgtgtcaggaaagcctccttttggtaggaaaaggaaaaggtggggtt
gcccagggggataggtggaaaaaataagcaacaggagcctcacgctgctt
cctatggaaacaattagccatgttcaggaactgtggcaaagaacggttga
acttgagactaagggtgcctgggaattggctgtgatctccccagcataac
cttgcttgtttgacctttctctctataggctccctgttagcccaggggcc
cagcttctacctggaggtgtctatggccgagtcctgccttcactgcttta
ggaactggggatgtcactgagcaggggtgacttgggccaaggccaaagct
gagtggttgagactgactcccaaggtcggctcatgaaccatgccggcagg
agcaatgtgtctttccctgtttcccatttctggagccatgtgctggaaca
accaagaaaaccccaaaactagggccccctggaagcctaagactatctga
ttggcttcttccaaactggccacaaccagttcccggcctggtattggagt
gtcagcagccctcacctggtacagggccacgttggtgtgctccaggaagg
ctggtaggctccttgctgacccctgggtcaccgaccgtggacttccacca
tccaccacacttcttgactcactgccgctgtccacatgtggcctctggga
taggaatggagtggggtttcaagaggctagatgcagggtgcccttctgcc
tacccagtccaggtctgcccactcaccctccggctgggggtccgctggag
gaaagtgagctcctgagatgtcagcaggatccgatgggggccccgcaaca
gccgcagctgctggaggcctaacctgagatgaaaaagacctcattcaggc
ttattgggccctgccttgactcagcacaacctcctcaatctttcaacgtc
ctcatcgtgcagctcagggcttgcaagtgggtgagtgcctacccattaca
gagtccat
ctccccctacttctacctcttaagtgctgagatcacaggcttaggccagc
aaacgctgtttatgcagtgttagaattcaaacccagagcttcttgcatgc
tgggcaatcactctatcaagggaacttcatccccagcactgtgtgtgtgt
gtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_105602431_105603584
seq2: B6Ng01-338J03.b_45_1202 (reverse)

seq1  ATGGGCTCTGT-ATTGGTA-GCACTCA-CCACCTGCCAGCCCTGGAGCTG  47
      |||| |||||| || |||| ||||||| |||| ||| |||||| ||||| 
seq2  ATGGACTCTGTAATGGGTAGGCACTCACCCACTTGCAAGCCCT-GAGCT-  48

seq1  GCACGGAATGA-GACGTGGAAAGA-TGAGGAGGTGGTGCTGAGTCCAGGC  95
      |||||  |||| ||||| |||||| ||||||||| |||||||||| ||||
seq2  GCACG--ATGAGGACGTTGAAAGATTGAGGAGGTTGTGCTGAGTCAAGGC  96

seq1  AGGG-CCAAT-AGCCTGAATGAGGTC-TTTTCATCTTCAGGTTAGGCCTC  142
      |||| ||||| ||||||||||||||| |||||||| ||||||||||||||
seq2  AGGGCCCAATAAGCCTGAATGAGGTCTTTTTCATC-TCAGGTTAGGCCTC  145

seq1  CAGCAGCTGCGGCTGTTGCGGGGCCCCCATCGGATCCTGCTGACATCTCA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGCGGCTGTTGCGGGGCCCCCATCGGATCCTGCTGACATCTCA  195

seq1  GGAGCTCACCTTCCTCCAGCGGACCCCCAGCCGGAGGGTGAGTGGGCAGA  242
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCACTTTCCTCCAGCGGACCCCCAGCCGGAGGGTGAGTGGGCAGA  245

seq1  CCTGGACTGGGTAGGCAGAAGGGCACCCTGCATCTAGCCTCTTG-AACCC  291
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTGGACTGGGTAGGCAGAAGGGCACCCTGCATCTAGCCTCTTGAAACCC  295

seq1  CACTCCATTCCTATCCCAGAGGCCACATGTGGACAGCGGCAGTGAGTCAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATTCCTATCCCAGAGGCCACATGTGGACAGCGGCAGTGAGTCAA  345

seq1  GAAGTGTGGTGGATGGTGGAAGTCCACGGTCGGTGACCCAGGGGTCAGCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGGTGGATGGTGGAAGTCCACGGTCGGTGACCCAGGGGTCAGCA  395

seq1  AGGAGCCTACCAGCCTTCCTGGAGCACACCAACGTGGCCCTGTACCAGGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTACCAGCCTTCCTGGAGCACACCAACGTGGCCCTGTACCAGGT  445

seq1  GAGGGCTGCTGACACTCCAATACCAGGCCGGGAACTGGTTGTGGCCAGTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGCTGACACTCCAATACCAGGCCGGGAACTGGTTGTGGCCAGTT  495

seq1  TGGAAGAAGCCAATCAGATAGTCTTAGGCTTCCAGGGGGCCCTAGTTTTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAGCCAATCAGATAGTCTTAGGCTTCCAGGGGGCCCTAGTTTTG  545

seq1  GGGTTTTCTTGGTTGTTCCAGCACATGGCTCCAGAAATGGGAAACAGGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCTTGGTTGTTCCAGCACATGGCTCCAGAAATGGGAAACAGGGA  595

seq1  AAGACACATTGCTCCTGCCGGCATGGTTCATGAGCCGACCTTGGGAGTCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACATTGCTCCTGCCGGCATGGTTCATGAGCCGACCTTGGGAGTCA  645

seq1  GTCTCAACCACTCAGCTTTGGCCTTGGCCCAAGTCACCCCTGCTCAGTGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAACCACTCAGCTTTGGCCTTGGCCCAAGTCACCCCTGCTCAGTGA  695

seq1  CATCCCCAGTTCCTAAAGCAGTGAAGGCAGGACTCGGCCATAGACACCTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAGTTCCTAAAGCAGTGAAGGCAGGACTCGGCCATAGACACCTC  745

seq1  CAGGTAGAAGCTGGGCCCCTGGGCTAACAGGGAGCCTATAGAGAGAAAGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGAAGCTGGGCCCCTGGGCTAACAGGGAGCCTATAGAGAGAAAGG  795

seq1  TCAAACAAGCAAGGTTATGCTGGGGAGATCACAGCCAATTCCCAGGCACC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAGCAAGGTTATGCTGGGGAGATCACAGCCAATTCCCAGGCACC  845

seq1  CTTAGTCTCAAGTTCAACCGTTCTTTGCCACAGTTCCTGAACATGGCTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTCAAGTTCAACCGTTCTTTGCCACAGTTCCTGAACATGGCTAA  895

seq1  TTGTTTCCATAGGAAGCAGCGTGAGGCTCCTGTTGCTTATTTTTTCCACC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCATAGGAAGCAGCGTGAGGCTCCTGTTGCTTATTTTTTCCACC  945

seq1  TATCCCCCTGGGCAACCCCACCTTTTCCTTTTCCTACCAAAAGGAGGCTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCCTGGGCAACCCCACCTTTTCCTTTTCCTACCAAAAGGAGGCTT  995

seq1  TCCTGACACACAAAACACAATAGCCAGCAGGCTGCAGGTGAGGCTGTATG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACACACAAAACACAATAGCCAGCAGGCTGCAGGTGAGGCTGTATG  1045

seq1  GAGGAGCCAGTTCCCTAGGGATCAGAGCAGAGGGCTGGGACCACAGTGGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCCAGTTCCCTAGGGATCAGAGCAGAGGGCTGGGACCACAGTGGG  1095

seq1  CCTCATCTCACGTCTCTTCTGAAGGCCCAAGTCACAGCTAGCTTATCCCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTCACGTCTCTTCTGAAGGCCCAAGTCACAGCTAGCTTATCCCA  1145

seq1  GGTACCTGAATTC  1154
      |||||||||||||
seq2  GGTACCTGAATTC  1158