BAC Information

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BAC

Clone NameB6Ng01-339A13
Chromosome7 (Build37)
Map Location 80,888,715 - 80,890,848
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik
Downstream geneSt8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308, EG665641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339A13.bB6Ng01-339A13.g
ACCGA123143GA123144
length9901,129
definitionB6Ng01-339A13.b B6Ng01-339A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,890,054 - 80,890,848)(80,888,715 - 80,889,838)
sequence
gaattctgtctcatctgatgatagaggcctgtaagaaagatataaataat
tccaaaaaagaaattcaggaaaacacaggcaaacaagtagaagcccttaa
agaggaaacaaataaatcccttatagaaatacaggaaaatacaatcaaac
aggtgaaggaattaaacaaaatagtccacgacccaatctctgttctgagg
gtctcccctgactgcacacaaggtcagcaggatctcccaaggtcaaaaca
agtaggcaaaatcctttctctacttctacatgtgctgctgctgctgctgc
tgttcctcctcctcctcctcctcttcctcctcctcctcctcccctctctc
tcctacccttccacaatggcattaggaagcaaaaccagaagtgcccatcc
tgctggacctccaggaccctcacatgcaccattgctctccagatttgatc
tcttatatcagtttcctggatggcaaaatactaatacatcaggcacataa
ggcggctcagtgaatatggctcctgccacccatccctaggaccaagtgat
gaagggagagaactgattccaacaatctgtcctctaacctaatctatctt
tctttctttctatctatctatctattttatctatctctgtgtgtgtgtga
ctctctctcatatacacactcacacacactaaataaatgaatgaaaatgt
gataaaaagtaaaatagataaaattcaaaatatttattaactcatagaaa
catcctggactcccatccctcaaaaatcaaagcccaattaaacggtttat
aagtgctcttggttacagcatttatcacagaaaaaagtaaagcaactaaa
acagataggaaaactcagattaaatgtgagtcctgggggcttcgtgggta
aagcatgtggtatatcaagcatggaaagccagagttcagattcctcagaa
ccagcctgattgtggcttggggatagctcggtaaaggcag
gaattctgttttcatagtgaaaaaattttaaataacgtacatagggctga
gtgtgtggtggtgtatacctgtaatctcaagattgaggaggtagaggcag
gaggatcatgagtcggaggctagctgctacacagcatgaccttggtaaaa
caaaacacagaacagatccagccatggacgctgtctaaagatacgaaggc
catctgggatgggttatactgattgtcagcttgacaggatctagaatggt
ctcgagggcgagcctctaggcatgtctgtgactgtgtttctagattgggt
tcttgaggtgagaggatacaccttaaatgtggtcggcacccgtggcaggg
gctggggtctcagacagagtgcagaggggagaatgagctgaagattggtg
ttcacatctcttgtttcctgccgctgtggcatccccgccatgctgggtgg
taccttcaaaatgtgagctgaaagaaactcttccttccctaagttactat
ttcaggtattttgttagagcaacaagaaaagaaaaatacagaacgtggac
tctttaagagctgttaaaagcaatgacatgggaaggcagtgttgtgaatt
aagagagactcagactatgggaaaagtaatgctggtgacagcgtcagccg
tgtattgttgaatgcagcagacttcacaacggcatgccatgtgggctcat
ttcactcagctataaatatatgcatatatgagtgtacaatggaatatatt
agcatgtgcacaaacttgaaaatatgggccattcttcctgtatgtactta
tattcatggcatgattcggtgtcatctggactcctttacagctctgagtc
atgtattcatgcacacacactgtatcctgaagaacagtgggaagacatct
ggggtgtacccctgggccatgacccctcattcttggtttccctggttggg
tatcagggtatgctctgtgtagccatgcctctggggttcctctgcttgta
cctgaacacttaagcttgcctgggctttctgatgcttttccatgccctgg
gtataccatagcatcttccctcctctgtctccatactttagttctggctg
ggccagctgatcacagcctgtctctcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_80890054_80890848
seq2: B6Ng01-339A13.b_237_1040 (reverse)

seq1  CTGCC-TTACCG-GC-ATCCCC-AGCCACACTCAGGCTGGGTTCTG-GGA  45
      ||||| |||||| || |||||| ||||||| ||||||| ||||||| |||
seq2  CTGCCTTTACCGAGCTATCCCCAAGCCACAATCAGGCT-GGTTCTGAGGA  49

seq1  ATCTGAACTCTGGC-TTCCATGCTTG-TATAACACATGCTTTTACCCACG  93
      |||||||||||||| ||||||||||| |||| ||||||| ||||||||||
seq2  ATCTGAACTCTGGCTTTCCATGCTTGATATACCACATGC-TTTACCCACG  98

seq1  GAG-CCCCAGGACTCACATTTAATCTGAGTTTTCCTATCTGTTTTAGTTG  142
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCCAGGACTCACATTTAATCTGAGTTTTCCTATCTGTTTTAGTTG  148

seq1  CTTTAC-TTTTTCTGTGATAAAATGCTGTAACCAAGGCAACTTATAAA-C  190
      |||||| |||||||||||| ||||||||||||||||   ||||||||| |
seq2  CTTTACTTTTTTCTGTGAT-AAATGCTGTAACCAAGAGCACTTATAAACC  197

seq1  GTTTAATTGGGCTTTGGTTTTTGAGGG-TTGGAGTCCAGGATGTTTCTAT  239
      |||||||||||||||| |||||||||| | ||||||||||||||||||||
seq2  GTTTAATTGGGCTTTGATTTTTGAGGGATGGGAGTCCAGGATGTTTCTAT  247

seq1  GTGTTAATAAATATTTTGAATTTTATCTATTTTACTTTTTATCACATTTT  289
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATAAATATTTTGAATTTTATCTATTTTACTTTTTATCACATTTT  297

seq1  CATTCATTTATTTAGTGTGTGTGAGTGTGTTTATGAGAGAGAGTCACACA  339
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTCATTTATTTAGTGTGTGTGAGTGTGTATATGAGAGAGAGTCACACA  347

seq1  CACACAGAGATAGAT-AGATAGATAGATAGATAGAAAGAAAGAAAGATAG  388
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  CACACAGAGATAGATAAAATAGATAGATAGATAGAAAGAAAGAAAGATAG  397

seq1  ATTAGGTTAGAGGACAGATTGTTGGAATCAGTTCTCTCCCTTCATCACTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTTAGAGGACAGATTGTTGGAATCAGTTCTCTCCCTTCATCACTT  447

seq1  GGTCCTAGGGATGGGTGGCAGGAGCCATATTCACTGAGCCGCCTTATGTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAGGGATGGGTGGCAGGAGCCATATTCACTGAGCCGCCTTATGTG  497

seq1  CCTGATGTATTAGTATTTTGCCATCCAGGAAACTGATATAAGAGATCAAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTATTAGTATTTTGCCATCCAGGAAACTGATATAAGAGATCAAA  547

seq1  TCTGGAGAGCAATGGTGCATGTGAGGGTCCTGGAGGTCCAGCAGGATGGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAGCAATGGTGCATGTGAGGGTCCTGGAGGTCCAGCAGGATGGG  597

seq1  CACTTCTGGTTTTGCTTCCTAATGCCATTGTGGAAGGGTAGGAGAGAGAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGGTTTTGCTTCCTAATGCCATTGTGGAAGGGTAGGAGAGAGAG  647

seq1  GGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAACAGCAGCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAACAGCAGCAG  697

seq1  CAGCAGCAGCACATGTAGAAGTAGAGAAAGGATTTTGCCTACTTGTTTTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAGCACATGTAGAAGTAGAGAAAGGATTTTGCCTACTTGTTTTG  747

seq1  ACCTTGGGAGATCCTGCTGACCTTGTGTGCAGTCAGGGGAGACCCTCAGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGAGATCCTGCTGACCTTGTGTGCAGTCAGGGGAGACCCTCAGA  797

seq1  ACAGAGA  795
      |||||||
seq2  ACAGAGA  804

seq1: chr7_80888715_80889838
seq2: B6Ng01-339A13.g_67_1195

seq1  GAATTCTGTTTTCATAGTGAAAAAATTTTAAATAACGTACATAGGGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTCATAGTGAAAAAATTTTAAATAACGTACATAGGGCTGA  50

seq1  GTGTGTGGTGGTGTATACCTGTAATCTCAAGATTGAGGAGGTAGAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTGGTGTATACCTGTAATCTCAAGATTGAGGAGGTAGAGGCAG  100

seq1  GAGGATCATGAGTCGGAGGCTAGCTGCTACACAGCATGACCTTGGTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCATGAGTCGGAGGCTAGCTGCTACACAGCATGACCTTGGTAAAA  150

seq1  CAAAACACAGAACAGATCCAGCCATGGACGCTGTCTAAAGATACGAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACAGAACAGATCCAGCCATGGACGCTGTCTAAAGATACGAAGGC  200

seq1  CATCTGGGATGGGTTATACTGATTGTCAGCTTGACAGGATCTAGAATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGATGGGTTATACTGATTGTCAGCTTGACAGGATCTAGAATGGT  250

seq1  CTCGAGGGCGAGCCTCTAGGCATGTCTGTGACTGTGTTTCTAGATTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGGCGAGCCTCTAGGCATGTCTGTGACTGTGTTTCTAGATTGGGT  300

seq1  TCTTGAGGTGAGAGGATACACCTTAAATGTGGTCGGCACCCGTGGCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGTGAGAGGATACACCTTAAATGTGGTCGGCACCCGTGGCAGGG  350

seq1  GCTGGGGTCTCAGACAGAGTGCAGAGGGGAGAATGAGCTGAAGATTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTCTCAGACAGAGTGCAGAGGGGAGAATGAGCTGAAGATTGGTG  400

seq1  TTCACATCTCTTGTTTCCTGCCGCTGTGGCATCCCCGCCATGCTGGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCTCTTGTTTCCTGCCGCTGTGGCATCCCCGCCATGCTGGGTGG  450

seq1  TACCTTCAAAATGTGAGCTGAAAGAAACTCTTCCTTCCCTAAGTTACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAAAATGTGAGCTGAAAGAAACTCTTCCTTCCCTAAGTTACTAT  500

seq1  TTCAGGTATTTTGTTAGAGCAACAAGAAAAGAAAAATACAGAACGTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTATTTTGTTAGAGCAACAAGAAAAGAAAAATACAGAACGTGGAC  550

seq1  TCTTTAAGAGCTGTTAAAAGCAATGACATGGGAAGGCAGTGTTGTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGAGCTGTTAAAAGCAATGACATGGGAAGGCAGTGTTGTGAATT  600

seq1  AAGAGAGACTCAGACTATGGGAAAAGTAATGCTGGTGACAGCGTCAGCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACTCAGACTATGGGAAAAGTAATGCTGGTGACAGCGTCAGCCG  650

seq1  TGTATTGTTGAATGCAGCAGACTTCACAACGGCATGCCATGTGGGCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTTGAATGCAGCAGACTTCACAACGGCATGCCATGTGGGCTCAT  700

seq1  TTCACTCAGCTATAAATATATGCATATATGAGTGTACAATGGAATATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCAGCTATAAATATATGCATATATGAGTGTACAATGGAATATATT  750

seq1  AGCATGTGCACAAACTTGAAAATATGGGCCATTCTTCCTGTATGTACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCACAAACTTGAAAATATGGGCCATTCTTCCTGTATGTACTTA  800

seq1  TATTCATGGCATGATTCGGTGTCATCTGGACTCCTTTACAGCTCTGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGGCATGATTCGGTGTCATCTGGACTCCTTTACAGCTCTGAGTC  850

seq1  ATGTATTCATGCACACACACTGTATCCTGAAGAACAGTGGGAAGACATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCATGCACACACACTGTATCCTGAAGAACAGTGGGAAGACATCT  900

seq1  GGGGTGTACCCCT-GGCCATGACCCCTCATTCTTGGTTTTCCTGGTTGGG  949
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  GGGGTGTACCCCTGGGCCATGACCCCTCATTCTTGGTTTCCCTGGTTGGG  950

seq1  TATCAGGGTATGCTCTGTGTAGCCATGCCTCTGGGG-TCCTCTGCTTGTA  998
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATCAGGGTATGCTCTGTGTAGCCATGCCTCTGGGGTTCCTCTGCTTGTA  1000

seq1  CCTG-ACACTTAGGCTTGCCT-GGCTTTCTGATGCTTTCCCATGCCCTGG  1046
      |||| ||||||| |||||||| |||||||||||||||| |||||||||||
seq2  CCTGAACACTTAAGCTTGCCTGGGCTTTCTGATGCTTTTCCATGCCCTGG  1050

seq1  GTATACCATAGCATC-TCCCTCCTCTGTTCTTCATTTCTTTAGTTTCTGC  1095
      ||||||||||||||| ||||||||||| ||| || | ||||||||   ||
seq2  GTATACCATAGCATCTTCCCTCCTCTG-TCTCCA-TACTTTAGTTCTGGC  1098

seq1  TTGG-CAGCTGTTCACAG-CTGTCTCTCTTC  1124
      | || |||||| |||||| ||||||||||||
seq2  TGGGCCAGCTGATCACAGCCTGTCTCTCTTC  1129