BAC Information

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BAC

Clone NameB6Ng01-339E12
Chromosome7 (Build37)
Map Location 98,918,342 - 99,089,864
singlet/doubletdoublet
Overlap geneDlg2
Upstream geneLOC621816, LOC100039943
Downstream geneCcdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339E12.bB6Ng01-339E12.g
ACCGA123318GA123319
length1,1481,111
definitionB6Ng01-339E12.b B6Ng01-339E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,088,721 - 99,089,864)(98,918,342 - 98,919,451)
sequence
gaattcagcacaaaggctattcacaatcagaagttagaccacagggatta
aacagaaactccctagagcctaggaatgtaagaataaccaacagaaaact
gatgctttatctcccaagtttgcatacatcgtgaaatgatctttctggtg
atttgtgcataccactattctgataacactttttataaaggaagaggaga
tagtgactccttggagatataactcatcttagttagacagacattaggct
tgggagcctttggagctctggataaactcttaccgcataatgggtttttt
gactccacctctgggtttccagaagactattgctcatgaaaacagattca
tctgagagtatgctaaagagatgggaggaataattatctccttaatgaga
taatgtacttttccttccccaaagccctttccaggatggaacagctcaca
gagcttccatcatgctgcactgctaagtctgcctgcttttctttttcatc
tttagctctcttttattttagatactggccaaaatatctaagcatggttg
cctgtcactagggcttttgtctgaggcttcctttccttttggcagtccag
ctgcttgcttatgtctattgctgcacaggtatataatgaaagttaaatga
attaaaggaaaggtcataatctaataagattgctagccaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagagaagaagaag
aagaagaagaagaagaagaagaatcctctcgctgtttccttttccccctt
tctccccattccctttcctcctctctctacacatgctcatggctggcctc
tactctctctgcctttctctgcctctactacactcttaacttacctcccc
attccatgaataaactctattctataaaaaaaaacccacacaaaaaacca
aaaagaaaaaaaaaagcatctattttctcactcagcacattgaatggcat
gtgagagtacctcagatgtgtcatttgcaacctgaggagtgccctagtaa
atgaggtatagttttgggattgtgagaaattaaggtcttttgtttagtca
ttctattctacgtattttgtttaacagcttcagctagacgtccaagtt

gaattcttctgacttagggggcttgtgttggctggagcaaaacctgggct
tgatttctgtttttttgggttttctttagagttttaataatgttgaatta
tgtattttcctctcaatttaattattgattcattttgcattgcaatcaca
gcgtccctcacacaccctgaccctcatccctccctccccttgatctctga
aaatagtaagattcctcactgggtaccaatccactttgacacctcaagtc
actgcaggactaggtacatcctctcaccctcagtccaaccaagagagttc
cattgtgggaacaggatccacaggcaagcaacagagtctccgctccagtt
ttttgaggacccacatgaagaccaagattcatgtctgctccatatgtggg
gtggggctaggtccagcccttttatactcttcagttggtagtttggtctc
tgtgacccccatttagttgaatctggtggtcttcttgtggagtcccagtc
cccttcaggttcctcaatccttcctccaacttctgttaataaagaacaaa
atagtgtggttctaacgtgaaagcacaggctatcagatgggaatcacaca
tctcctacctctgaaaatagtgacagtaagtacagtgtttgaattctttc
aaatggcaactaaaaaaaaaaaagtatgattaatcatcaattttcaagtc
agtttaagaaactttaaatgtttacttggtaagtcttaaatgggtttaaa
taagcaaatccttttacttgtgctacctctttataatagaatgctgggac
agacagatttccatgtaaataaatgaagtttccagtttactcatttgtca
gcctcttccatgacactggaaaggaacacagtcatcccagttctgtaaat
tttgtattgtttcactgaaaagacagttcccccaaatgaattgatttttc
tgtcttcccacaatttcctggaactactagtaaaaggcatgcaattctaa
ttttcaagaattattatgcctttggctggtttggcttgaagaatatactc
tgcctatcactggtatgcaaatatataatccattttattcagtggagtct
tgcagtaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_99088721_99089864
seq2: B6Ng01-339E12.b_44_1191 (reverse)

seq1  AACTTGG----------GAAGCTGT--AACAAAATACCCTAGAATAG-AT  37
      |||||||          ||||||||  ||||||||| | |||||||| ||
seq2  AACTTGGACGTCTAGCTGAAGCTGTTAAACAAAATA-CGTAGAATAGAAT  49

seq1  GACTTAAACAAAAGAACTTTATTTTCTCACAATTCCAAAAACTATTACTT  87
      ||| |||||||||| || ||| |||||||||| ||| ||||||| ||| |
seq2  GAC-TAAACAAAAG-ACCTTAATTTCTCACAA-TCCCAAAACTA-TACCT  95

seq1  CATTTTTACTAGGGCACTCCTCCAGGTTTGCAAATGACCACATCTGA-GT  136
      ||  ||||||||||||||||| |||| |||||||||| ||||||||| ||
seq2  CA--TTTACTAGGGCACTCCT-CAGG-TTGCAAATGA-CACATCTGAGGT  140

seq1  ACTTCTCACATGCCCATTCAATGTGCTGAGTGAG-AAATAGATGCTTTTT  185
      || ||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  AC-TCTCACATG-CCATTCAATGTGCTGAGTGAGAAAATAGATGCTTTTT  188

seq1  TTTTTCTTTTTGGTTTTTTGTTGTGGGTTTTTTTTTATAGAATAGAGTTT  235
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTGGTTTTTTG-TGTGGGTTTTTTTTTATAGAATAGAGTTT  237

seq1  ATTCATGGAATGGGGAGGTAAGTTAAGAGTGTAGTAGAGGCAGAGAAAGG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGGAATGGGGAGGTAAGTTAAGAGTGTAGTAGAGGCAGAGAAAGG  287

seq1  CAGAGAGAGTAGAGGCCAGCCATGAGCATGTGTAGAGAGAGGAGGAAAGG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGTAGAGGCCAGCCATGAGCATGTGTAGAGAGAGGAGGAAAGG  337

seq1  GAATGGGGAGAAAGGGGGAAAAGGAAACAGCGAGAGGATTCTTCTTCTTC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGGAGAAAGGGGGAAAAGGAAACAGCGAGAGGATTCTTCTTCTTC  387

seq1  TTCTTCTTCTTCTTCTTCT--TCTTCTTCTTCTTCTTCTTCTTCTTCTTC  433
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  437

seq1  TTCTTCTTCTTCTTCTTCTTCTTGGCTAGCAATCTTATTAGATTATGACC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTGGCTAGCAATCTTATTAGATTATGACC  487

seq1  TTTCCTTTAATTCATTTAACTTTCATTATATACCTGTGCAGCAATAGACA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTAATTCATTTAACTTTCATTATATACCTGTGCAGCAATAGACA  537

seq1  TAAGCAAGCAGCTGGACTGCCAAAAGGAAAGGAAGCCTCAGACAAAAGCC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGCAGCTGGACTGCCAAAAGGAAAGGAAGCCTCAGACAAAAGCC  587

seq1  CTAGTGACAGGCAACCATGCTTAGATATTTTGGCCAGTATCTAAAATAAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGACAGGCAACCATGCTTAGATATTTTGGCCAGTATCTAAAATAAA  637

seq1  AGAGAGCTAAAGATGAAAAAGAAAAGCAGGCAGACTTAGCAGTGCAGCAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTAAAGATGAAAAAGAAAAGCAGGCAGACTTAGCAGTGCAGCAT  687

seq1  GATGGAAGCTCTGTGAGCTGTTCCATCCTGGAAAGGGCTTTGGGGAAGGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAGCTCTGTGAGCTGTTCCATCCTGGAAAGGGCTTTGGGGAAGGA  737

seq1  AAAGTACATTATCTCATTAAGGAGATAATTATTCCTCCCATCTCTTTAGC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACATTATCTCATTAAGGAGATAATTATTCCTCCCATCTCTTTAGC  787

seq1  ATACTCTCAGATGAATCTGTTTTCATGAGCAATAGTCTTCTGGAAACCCA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCAGATGAATCTGTTTTCATGAGCAATAGTCTTCTGGAAACCCA  837

seq1  GAGGTGGAGTCAAAAAACCCATTATGCGGTAAGAGTTTATCCAGAGCTCC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGAGTCAAAAAACCCATTATGCGGTAAGAGTTTATCCAGAGCTCC  887

seq1  AAAGGCTCCCAAGCCTAATGTCTGTCTAACTAAGATGAGTTATATCTCCA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCCCAAGCCTAATGTCTGTCTAACTAAGATGAGTTATATCTCCA  937

seq1  AGGAGTCACTATCTCCTCTTCCTTTATAAAAAGTGTTATCAGAATAGTGG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCACTATCTCCTCTTCCTTTATAAAAAGTGTTATCAGAATAGTGG  987

seq1  TATGCACAAATCACCAGAAAGATCATTTCACGATGTATGCAAACTTGGGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACAAATCACCAGAAAGATCATTTCACGATGTATGCAAACTTGGGA  1037

seq1  GATAAAGCATCAGTTTTCTGTTGGTTATTCTTACATTCCTAGGCTCTAGG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGCATCAGTTTTCTGTTGGTTATTCTTACATTCCTAGGCTCTAGG  1087

seq1  GAGTTTCTGTTTAATCCCTGTGGTCTAACTTCTGATTGTGAATAGCCTTT  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTGTTTAATCCCTGTGGTCTAACTTCTGATTGTGAATAGCCTTT  1137

seq1  GTGCTGAATTC  1144
      |||||||||||
seq2  GTGCTGAATTC  1148


seq1: chr7_98918342_98919451
seq2: B6Ng01-339E12.g_67_1177

seq1  GAATTCTTCTGACTTAGGGGGCTTGTGTTGGCTGGAGCAAAACCTGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGACTTAGGGGGCTTGTGTTGGCTGGAGCAAAACCTGGGCT  50

seq1  TGATTTCTGTTTTTTTGGGTTTTCTTTAGAGTTTTAATAATGTTGAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTGTTTTTTTGGGTTTTCTTTAGAGTTTTAATAATGTTGAATTA  100

seq1  TGTATTTTCCTCTCAATTTAATTATTGATTCATTTTGCATTGCAATCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTCCTCTCAATTTAATTATTGATTCATTTTGCATTGCAATCACA  150

seq1  GCGTCCCTCACACACCCTGACCCTCATCCCTCCCTCCCCTTGATCTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCCTCACACACCCTGACCCTCATCCCTCCCTCCCCTTGATCTCTGA  200

seq1  AAATAGTAAGATTCCTCACTGGGTACCAATCCACTTTGACACCTCAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAAGATTCCTCACTGGGTACCAATCCACTTTGACACCTCAAGTC  250

seq1  ACTGCAGGACTAGGTACATCCTCTCACCCTCAGTCCAACCAAGAGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGACTAGGTACATCCTCTCACCCTCAGTCCAACCAAGAGAGTTC  300

seq1  CATTGTGGGAACAGGATCCACAGGCAAGCAACAGAGTCTCCGCTCCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGGAACAGGATCCACAGGCAAGCAACAGAGTCTCCGCTCCAGTT  350

seq1  TTTTGAGGACCCACATGAAGACCAAGATTCATGTCTGCTCCATATGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGACCCACATGAAGACCAAGATTCATGTCTGCTCCATATGTGGG  400

seq1  GTGGGGCTAGGTCCAGCCCTTTTATACTCTTCAGTTGGTAGTTTGGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTAGGTCCAGCCCTTTTATACTCTTCAGTTGGTAGTTTGGTCTC  450

seq1  TGTGACCCCCATTTAGTTGAATCTGGTGGTCTTCTTGTGGAGTCCCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCCCATTTAGTTGAATCTGGTGGTCTTCTTGTGGAGTCCCAGTC  500

seq1  CCCTTCAGGTTCCTCAATCCTTCCTCCAACTTCTGTTAATAAAGAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAGGTTCCTCAATCCTTCCTCCAACTTCTGTTAATAAAGAACAAA  550

seq1  ATAGTGTGGTTCTAACGTGAAAGCACAGGCTATCAGATGGGAATCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGGTTCTAACGTGAAAGCACAGGCTATCAGATGGGAATCACACA  600

seq1  TCTCCTACCTCTGAAAATAGTGACAGTAAGTACAGTGTTTGAATTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTACCTCTGAAAATAGTGACAGTAAGTACAGTGTTTGAATTCTTTC  650

seq1  AAATGGCAACTAAAAAAAAAAAAGTATGATTAATCATCAATTTTCAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCAACTAAAAAAAAAAAAGTATGATTAATCATCAATTTTCAAGTC  700

seq1  AGTTTAAGAAACTTTAAATGTTTACTTGGTAAGTCTTAAATGGGTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGAAACTTTAAATGTTTACTTGGTAAGTCTTAAATGGGTTTAAA  750

seq1  TAAGCAAATCCTTTTACTTGTGCTACCTCTTTATAATAGAATGCTGGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAATCCTTTTACTTGTGCTACCTCTTTATAATAGAATGCTGGGAC  800

seq1  AGACAGATTTCCATGTAAATAAATGAAGTTTCCAGTTTACTCATTTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATTTCCATGTAAATAAATGAAGTTTCCAGTTTACTCATTTGTCA  850

seq1  GCCTCTTCCATGACACTGGAAAGGAACACAGTCATCCCCAGTTCTGT-AA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  GCCTCTTCCATGACACTGGAAAGGAACACAGTCAT-CCCAGTTCTGTAAA  899

seq1  TTTTGTATTGTTTCACTGAAAAGACAGTTCCCCCAAATGATTTGA-TTTT  948
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  TTTTGTATTGTTTCACTGAAAAGACAGTTCCCCCAAATGAATTGATTTTT  949

seq1  CTGTCCTCCCACAA-TTCCTGGAACTACTAGTAAAAGGCATGC-ATTCTA  996
      ||||| |||||||| |||||||||||||||||||||||||||| ||||||
seq2  CTGTCTTCCCACAATTTCCTGGAACTACTAGTAAAAGGCATGCAATTCTA  999

seq1  --TTTCAAGAATTATTATG-CTTTTGCT-GTTTGCTTTGAAGAATATACT  1042
        ||||||||||||||||| |||| ||| |||||  ||||||||||||||
seq2  ATTTTCAAGAATTATTATGCCTTTGGCTGGTTTGGCTTGAAGAATATACT  1049

seq1  CTG-CTATCACTGTAATTGGCAAATAATATTTAATCAATTTTTATTCAGT  1091
      ||| |||||||||  ||  |||   ||||| ||||| | |||||||||||
seq2  CTGCCTATCACTGGTAT--GCA---AATATATAATCCA-TTTTATTCAGT  1093

seq1  GGAGCTCTGCAGGTAATAA  1110
      ||||   |||| |||||||
seq2  GGAGTCTTGCA-GTAATAA  1111


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