BAC Information

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BAC

Clone NameB6Ng01-339F16
Chromosome7 (Build37)
Map Location 135,782,614 - 135,921,436
singlet/doubletdoublet
Overlap geneInpp5f, LOC100043651, 1110007A13Rik, Sec23ip
Upstream geneBcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030
Downstream geneLOC210714, LOC100043144, Ppapdc1a, Brwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339F16.bB6Ng01-339F16.g
ACCGA123370GA123371
length1,1351,080
definitionB6Ng01-339F16.b B6Ng01-339F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,782,614 - 135,783,747)(135,920,364 - 135,921,436)
sequence
gaattcactgtatagaccaagctaaactggcctagaatttacagagatcc
acctgcctttgcctctgaagtgctgggattaaaggtgttgcactaccaca
cctggcagttttatttattatctattttttaagatgaggcctcaaacttg
ccgacctgggatatttgagaccatcataacaaaagatgaccttgaactcg
tgctcttcctgcctccacctcctgagttctgggtttatgtgtgtgccacc
atgcctctttccttcccttcgttttattgttaacatttctagattatcct
gtgttgatatatggagctagcgttccttgctcttcctttatttgagcatt
tcatgagctgcctgtcttccctcactgggaagttcttccaggatctttat
ttcttcttctttctccctgttataaataacattgcttgagttctgttgtg
tgctctgtctttggtgggctttaaaaatctcttcagcataggcaggcagt
ggtggcgtatccttttaatcccagcattaggaagacagaggcaggctgat
cgttgaatttgaggccagctaggtctacagagtgagttccaggacagaca
gagctacacagagaaaccctgtcttaaaaaatgtttttttttttcagcac
agaggagaaaagcattcagccattgtgtaaccatgctaagtattttaata
acactctcctacctgtccacatttacatatatatctctttaattcattta
catactgacaagataatttcacagctggatgttctgagctaaaattcgtt
ttctattatgtaaatgacgtgtatgaaacttctgattatttttctctaat
ttcagtcacatctcagagcagtgaataaatcactgacatcagtcaggaga
ctaagagcaagctctgtttgttaatatttattattattatttgttatcga
actctaccatctgcttcactgtctgctgtgtaatcagccctcctaaaggc
tgagtggttagaacagcagcagtgtgcagtccctccggatcttgtgggct
tggactaggtgtcacatggacttcaatggtcttacatctcctccatggct
ctcttctacaggtcctctttctgggatcctcattc
gaattcttaagacaggtctgtaacagcaggtgctaggcatataatcttta
aatcccagcactcaggagggaaaggcaggtggatagatctcttgtaagtt
catggccaggcctcatctgcatactgagttctaggacagccaaggccctg
tagagagaactggttccttaaagctgccctcttaaaccgggtagtggtgg
cgcacgcctttgatcccagaacttgggaggcagaggcaggtggatttctg
aattcgaggccagcctggtctacagagtgagttccaggacagccagggct
ctgtagagagaattggtttcttaaagctgtctgtcctcttatctccacat
atgcacagtggcatgcatgtgcccatacacaaagacatcacacataaatt
gtttaaatgttcatgattcactatagattgccggatagttttgatgtgac
tcagtgccttgaactcattttgcagccaggaacaaccttgacctcctaac
cttctgcctgttctgcagtaaatcttcgcttcttacctaagtgaagtctc
ttcctgcctttgtgatgtggaacgagaacagcttttaagtccaaatctgg
agcaatcataggctctaatctgtacgccactgggtcgagctgaaggaaga
gaagcaggcaccgtcaattacttacttgaagttacaggccacagtcaggg
aagcacacagctacttggccagccagagagtgacatttccacaccttcct
cagctactggctattataagatttgtgatttgtaggtgaaattactttgc
aagcagagcaactaacctgtttctcctttgagtaaaagctttctggtaca
aatacttattgaagtgtcatcagactcttaggacgggaagctgagctttg
caatcatgactgctattaatttcagtaggaaccttaagaatctatccgga
tgaagaggagagaccttttcattctttttttagtgcacagtacttcaccg
ggatggtaaatatttgcagaaatcttactgggtagggagggcgatatttc
tcattcaatcctagccacttcctcgaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_135782614_135783747
seq2: B6Ng01-339F16.b_49_1183

seq1  GAATTCACTGTATAGACCAAGCTAAACTGGCCTAGAATTTACAGAGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTATAGACCAAGCTAAACTGGCCTAGAATTTACAGAGATCC  50

seq1  ACCTGCCTTTGCCTCTGAAGTGCTGGGATTAAAGGTGTTGCACTACCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTTTGCCTCTGAAGTGCTGGGATTAAAGGTGTTGCACTACCACA  100

seq1  CCTGGCAGTTTTATTTATTATCTATTTTTTAAGATGAGGCCTCAAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGTTTTATTTATTATCTATTTTTTAAGATGAGGCCTCAAACTTG  150

seq1  CCGACCTGGGATATTTGAGACCATCATAACAAAAGATGACCTTGAACTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCTGGGATATTTGAGACCATCATAACAAAAGATGACCTTGAACTCG  200

seq1  TGCTCTTCCTGCCTCCACCTCCTGAGTTCTGGGTTTATGTGTGTGCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCTGCCTCCACCTCCTGAGTTCTGGGTTTATGTGTGTGCCACC  250

seq1  ATGCCTCTTTCCTTCCCTTCGTTTTATTGTTAACATTTCTAGATTATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTTTCCTTCCCTTCGTTTTATTGTTAACATTTCTAGATTATCCT  300

seq1  GTGTTGATATATGGAGCTAGCGTTCCTTGCTCTTCCTTTATTTGAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGATATATGGAGCTAGCGTTCCTTGCTCTTCCTTTATTTGAGCATT  350

seq1  TCATGAGCTGCCTGTCTTCCCTCACTGGGAAGTTCTTCCAGGATCTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGCTGCCTGTCTTCCCTCACTGGGAAGTTCTTCCAGGATCTTTAT  400

seq1  TTCTTCTTCTTTCTCCCTGTTATAAATAACATTGCTTGAGTTCTGTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTTCTCCCTGTTATAAATAACATTGCTTGAGTTCTGTTGTG  450

seq1  TGCTCTGTCTTTGGTGGGCTTTAAAAATCTCTTCAGCATAGGCAGGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTCTTTGGTGGGCTTTAAAAATCTCTTCAGCATAGGCAGGCAGT  500

seq1  GGTGGCGTATCCTTTTAATCCCAGCATTAGGAAGACAGAGGCAGGCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGTATCCTTTTAATCCCAGCATTAGGAAGACAGAGGCAGGCTGAT  550

seq1  CGTTGAATTTGAGGCCAGCTAGGTCTACAGAGTGAGTTCCAGGACAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGAATTTGAGGCCAGCTAGGTCTACAGAGTGAGTTCCAGGACAGACA  600

seq1  GAGCTACACAGAGAAACCCTGTCTTAAAAAATGTTTTTTTTTTTCAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACACAGAGAAACCCTGTCTTAAAAAATGTTTTTTTTTTTCAGCAC  650

seq1  AGAGGAGAAAAGCATTCAGCCATTGTGTAACCATGCTAAGTATTTTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAAAAGCATTCAGCCATTGTGTAACCATGCTAAGTATTTTAATA  700

seq1  ACACTCTCCTACCTGTCCACATTTACATATATATCTCTTTAATTCATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCCTACCTGTCCACATTTACATATATATCTCTTTAATTCATTTA  750

seq1  CATACTGACAAGATAATTTCACAGCTGGATGTTCTGAGCTAAAATTCGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGACAAGATAATTTCACAGCTGGATGTTCTGAGCTAAAATTCGTT  800

seq1  TTCTATTATGTAAATGACGTGTATGAAACTTCTGATTATTTTTCTCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTATGTAAATGACGTGTATGAAACTTCTGATTATTTTTCTCTAAT  850

seq1  TTCAGTCACATCTCAGAGCAGTGAATAAATCACTGACATCAGTCAGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCACATCTCAGAGCAGTGAATAAATCACTGACATCAGTCAGGAGA  900

seq1  CTAAGAGCAAGCTCTGTTTGTTAATATTTATTATTATTATTTGTTATCGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCAAGCTCTGTTTGTTAATATTTATTATTATTATTTGTTATCGA  950

seq1  ACTCTACCATCTGCTTCACTGTCTGCTGTGTAATCAGCCCTCCTAAAGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACCATCTGCTTCACTGTCTGCTGTGTAATCAGCCCTCCTAAAGGC  1000

seq1  TGAGTGGTTTAAGACAGCAGCAGTGTGCAGTCCC-CCGGATC-TGTGGGC  1048
      ||||||| |||  ||||||||||||||||||||| ||||||| |||||||
seq2  TGAGTGG-TTAGAACAGCAGCAGTGTGCAGTCCCTCCGGATCTTGTGGGC  1049

seq1  TTGGCCTAGGTTGTCACATTGGACTTCA--TGTC-TACATCT-CTCCATG  1094
      |||| ||||| ||||||| |||||||||   ||| ||||||| |||||||
seq2  TTGGACTAGG-TGTCACA-TGGACTTCAATGGTCTTACATCTCCTCCATG  1097

seq1  GCTCTCTTCTTACAGGGCCTCTTTCCTGGGATCCTCATTC  1134
      ||||||||| |||||| ||||||| |||||||||||||||
seq2  GCTCTCTTC-TACAGGTCCTCTTT-CTGGGATCCTCATTC  1135

seq1: chr7_135920364_135921436
seq2: B6Ng01-339F16.g_69_1148 (reverse)

seq1  CTATTCGAGG-AGTGGCTAGGATTG-ATGAGAAATATCG-CCTCCCTACC  47
      |||||||||| |||||||||||||| ||||||||||||| ||||||||||
seq2  CTATTCGAGGAAGTGGCTAGGATTGAATGAGAAATATCGCCCTCCCTACC  50

seq1  TGTAAAGGTTTCTTC-AATATTTACCAT-CCGGTGAGTTACTGTGCACTT  95
          ||| ||||| | |||||||||||| |||||||  ||||||||||| 
seq2  CAGTAAGATTTCTGCAAATATTTACCATCCCGGTGAAGTACTGTGCACTA  100

seq1  TAAAAAG-ATG-AAAGTTCTCTCCTCTTCATCCGGATAGATTCTT-AGGT  142
       |||||| ||| |||| |||||||||||||||||||||||||||| ||||
seq2  AAAAAAGAATGAAAAGGTCTCTCCTCTTCATCCGGATAGATTCTTAAGGT  150

seq1  TCTTACTTGAAATTAATAGCAGTCATGATTTGCAAAGCTCAGCTT-CCGT  191
      || ||| ||||||||||||||||||||| |||||||||||||||| ||||
seq2  TCCTAC-TGAAATTAATAGCAGTCATGA-TTGCAAAGCTCAGCTTCCCGT  198

seq1  CCTAAGAGTCTGATGACACTTCAATAAGTATTTGTACCAGAAAGCTTTTA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGTCTGATGACACTTCAATAAGTATTTGTACCAGAAAGCTTTTA  248

seq1  CTCAAAGGAGAAACAGGTTAGTTGCTCTGCTTGCAAAGTAATTTCACCTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGAGAAACAGGTTAGTTGCTCTGCTTGCAAAGTAATTTCACCTA  298

seq1  CAAATCACAAATCTTATAATAGCCAGTAGCTGAGGAAGGTGTGGAAATGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACAAATCTTATAATAGCCAGTAGCTGAGGAAGGTGTGGAAATGT  348

seq1  CACTCTCTGGCTGGCCAAGTAGCTGTGTGCTTCCCTGACTGTGGCCTGTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTGGCTGGCCAAGTAGCTGTGTGCTTCCCTGACTGTGGCCTGTA  398

seq1  ACTTCAAGTAAGTAATTGACGGTGCCTGCTTCTCTTCCTTCAGCTCGACC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGTAAGTAATTGACGGTGCCTGCTTCTCTTCCTTCAGCTCGACC  448

seq1  CAGTGGCGTACAGATTAGAGCCTATGATTGCTCCAGATTTGGACTTAAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCGTACAGATTAGAGCCTATGATTGCTCCAGATTTGGACTTAAAA  498

seq1  GCTGTTCTCGTTCCACATCACAAAGGCAGGAAGAGACTTCACTTAGGTAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTCGTTCCACATCACAAAGGCAGGAAGAGACTTCACTTAGGTAA  548

seq1  GAAGCGAAGATTTACTGCAGAACAGGCAGAAGGTTAGGAGGTCAAGGTTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGAAGATTTACTGCAGAACAGGCAGAAGGTTAGGAGGTCAAGGTTG  598

seq1  TTCCTGGCTGCAAAATGAGTTCAAGGCACTGAGTCACATCAAAACTATCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCTGCAAAATGAGTTCAAGGCACTGAGTCACATCAAAACTATCC  648

seq1  GGCAATCTATAGTGAATCATGAACATTTAAACAATTTATGTGTGATGTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCTATAGTGAATCATGAACATTTAAACAATTTATGTGTGATGTCT  698

seq1  TTGTGTATGGGCACATGCATGCCACTGTGCATATGTGGAGATAAGAGGAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATGGGCACATGCATGCCACTGTGCATATGTGGAGATAAGAGGAC  748

seq1  AGACAGCTTTAAGAAACCAATTCTCTCTACAGAGCCCTGGCTGTCCTGGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTTTAAGAAACCAATTCTCTCTACAGAGCCCTGGCTGTCCTGGA  798

seq1  ACTCACTCTGTAGACCAGGCTGGCCTCGAATTCAGAAATCCACCTGCCTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTAGACCAGGCTGGCCTCGAATTCAGAAATCCACCTGCCTC  848

seq1  TGCCTCCCAAGTTCTGGGATCAAAGGCGTGCGCCACCACTACCCGGTTTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTTCTGGGATCAAAGGCGTGCGCCACCACTACCCGGTTTA  898

seq1  AGAGGGCAGCTTTAAGGAACCAGTTCTCTCTACAGGGCCTTGGCTGTCCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCAGCTTTAAGGAACCAGTTCTCTCTACAGGGCCTTGGCTGTCCT  948

seq1  AGAACTCAGTATGCAGATGAGGCCTGGCCATGAACTTACAAGAGATCTAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAGTATGCAGATGAGGCCTGGCCATGAACTTACAAGAGATCTAT  998

seq1  CCACCTGCCTTTCCCTCCTGAGTGCTGGGATTTAAAGATTATATGCCTAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCTTTCCCTCCTGAGTGCTGGGATTTAAAGATTATATGCCTAG  1048

seq1  CACCTGCTGTTACAGACCTGTCTTAAGAATTC  1073
      ||||||||||||||||||||||||||||||||
seq2  CACCTGCTGTTACAGACCTGTCTTAAGAATTC  1080