BAC Information

Click to search

BAC

Clone NameB6Ng01-339O01
Chromosome7 (Build37)
Map Location 51,526,292 - 51,640,619
singlet/doubletdoublet
Overlap geneEG638453, Clec11a, Shank1, 1700008O03Rik, Syt3
Upstream geneZfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854
Downstream geneLrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339O01.bB6Ng01-339O01.g
ACCGA123754GA123755
length991876
definitionB6Ng01-339O01.b B6Ng01-339O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,526,292 - 51,527,280)(51,639,744 - 51,640,619)
sequence
gaattcacactctggagtctaaagaatctgttcctcagagatgaggaaga
ttcgaaccggggttcttcaccagagcccgtcaggaccccaggggcagaga
gagcactggatagagaatctctgtagcttactgactcacacgccccaccc
cctttggctgtctgtgttctggcccaatatacacatctcagagaccctct
ttacaagtctggccaactcaagccctcaaggtttcccactaaatgccacc
tcagaagaggtgggcacccctctcagcccttcactgaaacccctttctgg
cattaaaaaaaatcacattattttgtgtacatatatgtgaatgtgtatgt
gtgtgtgtgtacagaggttagacaatttagacaattttcagtagtcagta
gttctctccttctaccatgtttgtccatacccttgaaacactttcacaca
cacacaataaaaggagggatatgaattgtcaacaggatctagaatcacca
gggagatgggttcacacatacctgtgggagactggcttgattctgttgag
gtgagaagagccatcttaactatgggcagcccttcagactgtgggcagcc
atcttaactatgggcagacctccagactgtgggaagccatcttaactatg
ggcagcaagtcgttgagaagctgagctgagcaccagcattttgtttgtct
cctgtttcttgactggatgtgatgccaccggctgcctctatcacctgctg
cctcagtttccccactacaaccaactgtagtaataagccccatgaatcaa
gacaaaccctttctcctttcagaatttcatcacagaaacaaagacaagag
gtttgtctgtggggtatctgaggcaactctctggcacgtgggttggtgtt
ggttgaactgtggcaacccatgaatgaatgaagagtgtgactgaggacgc
gcaggattaaggagcagggctggtgttttgggggggggggg
gaattccaggttggacaaccagacaatggctggagacctcagatacaagg
caagagaagagagttgggaacacagacagacagaagcatggtcagtttaa
aaaaaaaaaaaaggagaacaggagagagaggtggaggtgggcgaggaggg
agtaacacaaggtaaggtttggagctagacattagacatcggtgggaaag
agccccccccccccccgagggaaagaacgagggccagacagtcaagagaa
gccaggctgctaaggaagactgactgccatttggccagggtcagactcac
ctgtgcttacccctgccttgtcctgggtggcagccgaggcggcggggggc
ggtagcccatggggattgcagggtggacgagcctagccgctgcggaccgg
tctccacgcttgccaggtggcaagaaggggggctggtgactgatctaggg
acccaaatcgggagggaaaaaatcagcccaagctttgcatcttgcccgac
tcgaagtagctgcgcgaccccagatgaccccggtgaggtccagccgcccc
ctcccacctccgtgcccccagcagctagttaaaagcttagggactacaac
tcccagctggtcttgctgctagtgctactgcagctttatcgcaccagagc
tgcaagggctgctgggagttgaagtcctcaatgcgtctccggtctgcaga
atatgggattttttgggggagtggtgctggaagggttaaaatgtcatggt
cccaagacgctgcaagagaggggaaaggagtccaagatctccagaggtca
cgtagctctaatcacttagggtcatggagatgggtcacttatccccatac
tctggggatgggtgggcaaggttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_51526292_51527280
seq2: B6Ng01-339O01.b_48_1038

seq1  GAATTCACACTCTGGAGTCTAAAGAATCTGTTCCTCAGAGATGAGGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCTGGAGTCTAAAGAATCTGTTCCTCAGAGATGAGGAAGA  50

seq1  TTCGAACCGGGGTTCTTCACCAGAGCCCGTCAGGACCCCAGGGGCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAACCGGGGTTCTTCACCAGAGCCCGTCAGGACCCCAGGGGCAGAGA  100

seq1  GAGCACTGGATAGAGAATCTCTGTAGCTTACTGACTCACACGCCCCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGGATAGAGAATCTCTGTAGCTTACTGACTCACACGCCCCACCC  150

seq1  CCTTTGGCTGTCTGTGTTCTGGCCCAATATACACATCTCAGAGACCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCTGTCTGTGTTCTGGCCCAATATACACATCTCAGAGACCCTCT  200

seq1  TTACAAGTCTGGCCAACTCAAGCCCTCAAGGTTTCCCACTAAATGCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGTCTGGCCAACTCAAGCCCTCAAGGTTTCCCACTAAATGCCACC  250

seq1  TCAGAAGAGGTGGGCACCCCTCTCAGCCCTTCACTGAAACCCCTTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGGTGGGCACCCCTCTCAGCCCTTCACTGAAACCCCTTTCTGG  300

seq1  CATTAAAAAAAATCACATTATTTTGTGTACATATATGTGAATGTGTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAAAAATCACATTATTTTGTGTACATATATGTGAATGTGTATGT  350

seq1  GTGTGTGTGTACAGAGGTTAGACAATTTAGACAATTTTCAGTAGTCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTACAGAGGTTAGACAATTTAGACAATTTTCAGTAGTCAGTA  400

seq1  GTTCTCTCCTTCTACCATGTTTGTCCATACCCTTGAAACACTTTCACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTCCTTCTACCATGTTTGTCCATACCCTTGAAACACTTTCACACA  450

seq1  CACACAATAAAAGGAGGGATATGAATTGTCAACAGGATCTAGAATCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATAAAAGGAGGGATATGAATTGTCAACAGGATCTAGAATCACCA  500

seq1  GGGAGATGGGTTCACACATACCTGTGGGAGACTGGCTTGATTCTGTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGGGTTCACACATACCTGTGGGAGACTGGCTTGATTCTGTTGAG  550

seq1  GTGAGAAGAGCCATCTTAACTATGGGCAGCCCTTCAGACTGTGGGCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGAGCCATCTTAACTATGGGCAGCCCTTCAGACTGTGGGCAGCC  600

seq1  ATCTTAACTATGGGCAGACCTCCAGACTGTGGGAAGCCATCTTAACTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACTATGGGCAGACCTCCAGACTGTGGGAAGCCATCTTAACTATG  650

seq1  GGCAGCAAGTCGTTGAGAAGCTGAGCTGAGCACCAGCATTTTGTTTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAAGTCGTTGAGAAGCTGAGCTGAGCACCAGCATTTTGTTTGTCT  700

seq1  CCTGTTTCTTGACTGGATGTGATGCCACCGGCTGCCTCTATCACCTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTTGACTGGATGTGATGCCACCGGCTGCCTCTATCACCTGCTG  750

seq1  CCTCAGTTTCCCCACTACAACCAACTGTAGTAATAAGCCCCATGAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTCCCCACTACAACCAACTGTAGTAATAAGCCCCATGAATCAA  800

seq1  GACAAACCCTTTCTCCTTTCAGAATTTCATCACAGAAACAAAGACAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACCCTTTCTCCTTTCAGAATTTCATCACAGAAACAAAGACAAGAG  850

seq1  GTTTGTCTGTGGGGTATCTGAGGCAACTCTCTGGCACGT-GGTTGGTGTT  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTTGTCTGTGGGGTATCTGAGGCAACTCTCTGGCACGTGGGTTGGTGTT  900

seq1  GGTTGAACTGTGGCAACCCATGAATGAATGAAGAGTGTGACTGAGGACGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAACTGTGGCAACCCATGAATGAATGAAGAGTGTGACTGAGGACGC  950

seq1  GCAGGATTAAGGAGCAGGGCTGGTGTTTGGGGGGGGGGGG-  989
      |||||||||||||||||||||||||||| ||||||||||| 
seq2  GCAGGATTAAGGAGCAGGGCTGGTGTTTTGGGGGGGGGGGG  991

seq1: chr7_51639744_51640619
seq2: B6Ng01-339O01.g_63_938 (reverse)

seq1  TTCACCCTTGCCCACCCATCCCCAGAGTATGGGGATTAGTGACCCATCT-  49
      |||| ||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TTCAACCTTGCCCACCCATCCCCAGAGTATGGGGATAAGTGACCCATCTC  50

seq1  CATGACCCCTAAGTGATTAGAGCTACGTGACCTCTGGAGATCTTGGACTC  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGA-CCCTAAGTGATTAGAGCTACGTGACCTCTGGAGATCTTGGACTC  99

seq1  CTTTCCCCTCTCCTGCAGCGTCTTGGGACCCTGACATTTTAACCCTTCCA  149
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  CTTTCCCCTCTCTTGCAGCGTCTTGGGACCATGACATTTTAACCCTTCCA  149

seq1  GCACCACTCCCCCAAAAAATCCCATATTCTGCAGACCGGAGACGCATTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACTCCCCCAAAAAATCCCATATTCTGCAGACCGGAGACGCATTGA  199

seq1  GGACTTCAACTCCCAGCAGCCCTTGCAGCTCTGGTGCGATAAAGCTGCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCAACTCCCAGCAGCCCTTGCAGCTCTGGTGCGATAAAGCTGCAG  249

seq1  TAGCACTAGCAGCAAGACCAGCTGGGAGTTGTAGTCCCTAAGCTTTTAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTAGCAGCAAGACCAGCTGGGAGTTGTAGTCCCTAAGCTTTTAAC  299

seq1  TAGCTGCTGGGGGCACGGAGGTGGGAGGGGGCGGCTGGACCTCACCGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTGGGGGCACGGAGGTGGGAGGGGGCGGCTGGACCTCACCGGGG  349

seq1  TCATCTGGGGTCGCGCAGCTACTTCGAGTCGGGCAAGATGCAAAGCTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGGGTCGCGCAGCTACTTCGAGTCGGGCAAGATGCAAAGCTTGG  399

seq1  GCTGATTTTTTCCCTCCCGATTTGGGTCCCTAGATCAGTCACCAGCCCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTTTTTCCCTCCCGATTTGGGTCCCTAGATCAGTCACCAGCCCCC  449

seq1  CTTCTTGCCACCTGGCAAGCGTGGAGACCGGTCCGCAGCGGCTAGGCTCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCCACCTGGCAAGCGTGGAGACCGGTCCGCAGCGGCTAGGCTCG  499

seq1  TCCACCCTGCAATCCCCATGGGCTACCGCCCCCCGCCGCCTCGGCTGCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTGCAATCCCCATGGGCTACCGCCCCCCGCCGCCTCGGCTGCCA  549

seq1  CCCAGGACAAGGCAGGGGTAAGCACAGGTGAGTCTGACCCTGGCCAAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACAAGGCAGGGGTAAGCACAGGTGAGTCTGACCCTGGCCAAATG  599

seq1  GCAGTCAGTCTTCCTTAGCAGCCTGGCTTCTCTTGACTGTCTGGCCCTCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGTCTTCCTTAGCAGCCTGGCTTCTCTTGACTGTCTGGCCCTCG  649

seq1  TTCTTTCCCTCGGGGGGGGGGGGGGCTCTTTCCCACCGATGTCTAATGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCCTCGGGGGGGGGGGGGGCTCTTTCCCACCGATGTCTAATGTC  699

seq1  TAGCTCCAAACCTTACCTTGTGTTACTCCCTCCTCGCCCACCTCCACCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCAAACCTTACCTTGTGTTACTCCCTCCTCGCCCACCTCCACCTC  749

seq1  TCTCTCCTGTTCTCCTTTTTTTTTTTTTTAAACTGACCATGCTTCTGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGTTCTCCTTTTTTTTTTTTTTAAACTGACCATGCTTCTGTCT  799

seq1  GTCTGTGTTCCCAACTCTCTTCTCTTGCCTTGTATCTGAGGTCTCCAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTTCCCAACTCTCTTCTCTTGCCTTGTATCTGAGGTCTCCAGCC  849

seq1  ATTGTCTGGTTGTCCAACCTGGAATTC  876
      |||||||||||||||||||||||||||
seq2  ATTGTCTGGTTGTCCAACCTGGAATTC  876