BAC Information

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BAC

Clone NameB6Ng01-340C22
Chromosome7 (Build37)
Map Location 12,092,691 - 12,093,880
singlet/doubletsinglet
Overlap geneZscan4-ps2
Upstream geneEG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, LOC675782
Downstream geneLOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340C22.bB6Ng01-340C22.g
ACCGA123965GA123966
length1,2171,188
definitionB6Ng01-340C22.b B6Ng01-340C22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagtaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccat
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattaccgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttccttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctacctcagtgaaa
ttcttaggagtccagtggtgtggggcatgcagagatattccttctaaggt
gaaagataagttattgcacctggcccctcctacaaccaagaaagaagcac
aacgtttagtgggtctatttggattctggagacaacacatccctcacttt
gggtgtgttacttaggcctatttaccaagtgactcggaaagctgctagct
ttgtgtggggcctggaacaggagaaggcccttcaacagtccaggctgctg
tgcaggctgctctaccacttggaccatatgacccagcagatccgatggta
cttgaggtgtctgtgctgatagagatgctgtttgagcctctggcagccct
gtaggtgatcacagaaagctttggattttggagcaagctctacatcatct
gagaccactatttctccctttgaaacagctctgctcgcattggacctagg
acctgaacgtctgacaaatgacaccaagtcacatagcctgcacctcgtaa
atcactcccactctagt
gaattcagttacctgcacccatgccgagcagttaacaattgcctgtaatt
ctagcttcatgggatcctataccctcttcctaccacaaactgccacaggc
atttttcagtgtgcatagacacacagagacacaattaaaaaattaatatt
ttccaagcctattaaagtagagaataatgtctctgctaggtatagctata
tggttctactacaaatcattttctttctttctttttttttctcctttctg
agacaagactagagttgtctatataaccatatagctgaggtagcacagta
ttaagagcagtgattgctcttgcagagtactgaggctggttccaagcatc
tacatggtggcatacagccaatccataactccatttgcaactgacttctt
tgggctcttggtgtgcagggagtatacatacaaacatgcagtcaaaatat
tcacacacatgcacatacacacaatatttactaaaagaaaccaaatgtat
atctgggcatggtggtacaagcctttactaacactcaggggacagaaaca
ggtgcgtctttgagttcagctatggctagatggtaagatcctttctccag
agaaaaagaagaagaaaaagaaaacaccaagtgtagtggggtgtgcctac
aagtggctgaggcaggaggactgtgtcatgtaaaagtgtaactgtggtct
ttcttctgtatcctcccacataatgacacagagattatattcatacagaa
gcttcaagaattacagctggacagaaatgtatctattctgacccgactat
catggcctggattattttccagtcccatgtcttgttacctgccatcttag
tctttccctggctcctcctgctccaacatctcctcatgaagcctcactca
tgacacccttcttgatctctgccccccacctttaaccccctcactgggat
ggaaatcctattttatctctcctgcccagctattgtctatttagatcttt
attaactgacccagcagctcagtcagtcatgggttcttcaggaagggagc
aggattgataagaaaaagaacactggacaacactgtaacatgacctagca
ggttctggagctgaagctgtttattttttttccattctgtcttttataac
cagtctaggtacacacaaaggttatttggccagtccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12092691_12093880
seq2: B6Ng01-340C22.g_66_1253 (reverse)

seq1  TAGGACTGGCCATATA--CTTTGTGTGTACCTAGAATGG-TATAAAAG-C  46
      |||||||||||| |||  ||||||||||||||||| ||| |||||||| |
seq2  TAGGACTGGCCAAATAACCTTTGTGTGTACCTAGACTGGTTATAAAAGAC  50

seq1  AGAATGG-AAAAAAATAAACAGGCCTTCAGCTTCAGAACTGGCTAGGGTC  95
      ||||||| ||||||||||||||  |||||||| ||||||  |||| ||||
seq2  AGAATGGAAAAAAAATAAACAG--CTTCAGCTCCAGAACCTGCTA-GGTC  97

seq1  ATGTTACAGTGTTGTCCAGTTGTCTTTTTCTTATCAATCCTTGCTCCCTT  145
      ||||||||||||||||||||  |||||||||||||||||| |||||||||
seq2  ATGTTACAGTGTTGTCCAGTGTTCTTTTTCTTATCAATCC-TGCTCCCTT  146

seq1  CCTGAAGAACCCATTGACTGACTGAGCTGGCTGGGTCAGTTAATAAAGAT  195
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CCTGAAGAACCCA-TGACTGACTGAGCT-GCTGGGTCAGTTAATAAAGAT  194

seq1  CTAAATAGACAATAGCTGGGCAGGAGAGATAAAATAGGATTTTCCATCCC  245
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTAAATAGACAATAGCTGGGCAGGAGAGATAAAATAGGA-TTTCCATCCC  243

seq1  AGTGAGGGGGTTAAAGGTGGGGGGCAGAGATCAAGAAGGGTGTCATGAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGGGTTAAAGGTGGGGGGCAGAGATCAAGAAGGGTGTCATGAGT  293

seq1  GAGGCTTCATGAGGAGATGTTGGAGCAGGAGGAGCCAGGGAAAGACTAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCATGAGGAGATGTTGGAGCAGGAGGAGCCAGGGAAAGACTAAG  343

seq1  ATGGCAGGTAACAAGACATGGGACTGGAAAATAATCCAGGCCATGATAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGTAACAAGACATGGGACTGGAAAATAATCCAGGCCATGATAGT  393

seq1  CGGGTCAGAATAGATACATTTCTGTCCAGCTGTAATTCTTGAAGCTTCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCAGAATAGATACATTTCTGTCCAGCTGTAATTCTTGAAGCTTCTG  443

seq1  TATGAATATAATCTCTGTGTCATTATGTGGGAGGACACAGAAGAAAGACC  495
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATGAATATAATCTCTGTGTCATTATGTGGGAGGATACAGAAGAAAGACC  493

seq1  ACAGTTACACTTTTACATGACACAGTCCTCCTGCCTCAGCCACTTGTAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTACACTTTTACATGACACAGTCCTCCTGCCTCAGCCACTTGTAGG  543

seq1  CACACCCCACTACACTTGGTGTTTTCTTTTTCTTCTTCTTTTTCTCTGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCACTACACTTGGTGTTTTCTTTTTCTTCTTCTTTTTCTCTGGA  593

seq1  GAAAGGATCTTACCATCTAGCCATAGCTGAACTCAAAGACGCACCTGTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATCTTACCATCTAGCCATAGCTGAACTCAAAGACGCACCTGTTT  643

seq1  CTGTCCCCTGAGTGTTAGTAAAGGCTTGTACCACCATGCCCAGATATACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCTGAGTGTTAGTAAAGGCTTGTACCACCATGCCCAGATATACA  693

seq1  TTTGGTTTCTTTTAGTAAATATTGTGTGTATGTGCATGTGTGTGAATATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTCTTTTAGTAAATATTGTGTGTATGTGCATGTGTGTGAATATT  743

seq1  TTGACTGCATGTTTGTATGTATACTCCCTGCACACCAAGAGCCCAAAGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGCATGTTTGTATGTATACTCCCTGCACACCAAGAGCCCAAAGAA  793

seq1  GTCAGTTGCAAATGGAGTTATGGATTGGCTGTATGCCACCATGTAGATGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTGCAAATGGAGTTATGGATTGGCTGTATGCCACCATGTAGATGC  843

seq1  TTGGAACCAGCCTCAGTACTCTGCAAGAGCAATCACTGCTCTTAATACTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACCAGCCTCAGTACTCTGCAAGAGCAATCACTGCTCTTAATACTG  893

seq1  TGCTACCTCAGCTATATGGTTATATAGACAACTCTAGTCTTGTCTCAGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCTCAGCTATATGGTTATATAGACAACTCTAGTCTTGTCTCAGAA  943

seq1  AGGAGAAAAAAAAAGAAAGAAAGAAAATGATTTGTAGTAGAACCATATAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAAAAAAAGAAAGAAAGAAAATGATTTGTAGTAGAACCATATAG  993

seq1  CTATACCTAGCAGAGACATTATTCTCTACTTTAATAGGCTTGGAAAATAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCTAGCAGAGACATTATTCTCTACTTTAATAGGCTTGGAAAATAT  1043

seq1  TAATTTTTTAATTGTGTCTCTGTGTGTCTATGCACACTGAAAAATGCCTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTAATTGTGTCTCTGTGTGTCTATGCACACTGAAAAATGCCTG  1093

seq1  TGGCAGTTTGTGGTAGGAAGAGGGTATAGGATCCCATGAAGCTAGAATTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGCAGTTTGTGGTAGGAAGAGGGTATAGGATCCCATGAAGCTAGAATTA  1143

seq1  CAGGCAATTGTTAACTGCTCGGCATGGGTGCAGGTAACTGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATTGTTAACTGCTCGGCATGGGTGCAGGTAACTGAATTC  1188