BAC Information

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BAC

Clone NameB6Ng01-340E21
Chromosome7 (Build37)
Map Location 18,598,161 - 18,599,338
singlet/doubletsinglet
Overlap geneCeacam13
Upstream genePpp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11
Downstream geneLOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340E21.bB6Ng01-340E21.g
ACCGA124048GA124049
length1,188741
definitionB6Ng01-340E21.b B6Ng01-340E21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctaggctgaactcccgaggacaagcagttgccaaaatgatgta
tttttctttggggatacaaactttcctataaagtctcagaattatcagta
cagacagtatgttgtatggccacccttaacagctgttctattcatgccaa
atctcaggaaaaggagatgcccacaagacctggcctaaccatgattgcca
tgacagatactgagttattccacatgatccaagacctggatgcagagtga
cacattgtttcagtcagctctagcaggtactcaaattcaagcaatgccac
aaagcttgcttggtgccatactcagcgtgaggccccagagtctgagctga
gtttgacatcattggactgagttaccatactactgtctacaggttccatt
aggtcaatatttctgatgtattttggtttacccccatgatgtgtctcttt
tactaaatgcccaaatccaagttagagtacacagtaaagaggggaggaag
gcacagtacaatcctcattgtcttaggtatacagagaagaataaacccca
ccttcacccaggagtcgcaaagagtcacttactatttacttggaggtcaa
taatggcccattctgatatcaaatcaacagatacggttcgtagggtataa
agccctgcgtctttcttcttgacattgaagagaagcaaggacccatcatt
gcgtactttcactctgtcataatatgcataccccagagtggttgaattgg
tgaggaatgaatggcttgctatcttcaaatgttcaagtggaagtactcct
ttgtgccaggcaaagacttgaagcttctttggcagattaaaaaccgacag
aaaaatattgatgttttcttcaaccctaagtggcaccaactgaattgtga
gttgagaaggggtaagatgcttcttgtagcctaatagtgggcctagatgg
aaaaaaaaaagaaatagaagaaatccttaaaagtggttctcctgcatttg
gtagaaaagaaatatctctgagtcatgagcaggtgtgtccatcagtcctc
tttgttgtggtgttgtggagggtctgttctatcctacttgattggatagg
accaccacacacattcatgcttcagagttcaatgaaacctctgtatggga
catttccattcatcttgttctgcatgactcactgttca
gaattctttgttcagttctgagccccaaagaatgaatttatgaaattcct
agccaaatggatgaacctggagggcatcatcctgagtgaggtaacacatt
cacaaaggaactcacacaatatgtactcactgataagtggatattagccc
aaaacctaggatacccaagatataagatacaatttcctaaacacatgaaa
ctcaaaagaaaatgaagactgaagtgtggacactatgcccctccttagaa
gtgggaacaaaacacccttggaaggagttacagagacaaagtttgcagct
gagatgaaaggatggaccatgtagagactgccatatccagggatccaccc
cataatcagcatccaaacgctgacaccattgcatacactagcaagatttt
atcgaagggacccagatgtagctgtctcttgtgagactatgccggggcct
agcaaacacagaagtggatgctcacagtcagctaatggatggatcacagg
gctcccaatggaggagctagagaaagtagccaaggagctaaagggatctg
caaccctataggtggaacaacattatgaactaaccagtacccctgagctc
ttgactctagctgcatatgtatcaaaagatggcctagtcggccatcactg
gaaagagaggcccattggacttgcaaactttatatgccccagtacagggg
aatgccagggccaaaaagggggagtgggtgggtaggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_18598161_18599338
seq2: B6Ng01-340E21.b_50_1237 (reverse)

seq1  TGAACAGTGAGTCATGCAGA--CAGATG-ATGGGAATGTCCCATACAGAA  47
      ||||||||||||||||||||   ||||| |||| ||||||||||||||| 
seq2  TGAACAGTGAGTCATGCAGAACAAGATGAATGGAAATGTCCCATACAGAG  50

seq1  G-TTCA-TGGACTCTGAAGGCATGAATGTGTGT-GTG--TCTATCCCATC  92
      | |||| || |||||||| |||||||||||||| |||   |||||| |||
seq2  GTTTCATTGAACTCTGAA-GCATGAATGTGTGTGGTGGTCCTATCCAATC  99

seq1  AAGTAGGATAG-ACAGACCCTCACACA----CACAACAAGGAGGACTGAT  137
      ||||||||||| |||||||||| ||||    |||||||| ||||||||||
seq2  AAGTAGGATAGAACAGACCCTC-CACAACACCACAACAAAGAGGACTGAT  148

seq1  GGACACACCTGCTCATGACTCAGAGATATTTC-TTTCTACCAAATGCAGG  186
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGACACACCTGCTCATGACTCAGAGATATTTCTTTTCTACCAAATGCAGG  198

seq1  AGAACCACTTTTAAGGATTTCTTTCTATTTCTTTTTTTTTTTCCATCTAG  236
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  AGAACCACTTTTAAGGATTTC-TTCTATTTC-TTTTTTTTTTCCATCTAG  246

seq1  GCCCACTATTAGGCTACAAGAAGCATCTTACCCCTTCTCAACTCACAATT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTATTAGGCTACAAGAAGCATCTTACCCCTTCTCAACTCACAATT  296

seq1  CAGTTGGTGCCACTTAGGGTTGAAGAAAACATCAATATTTTTCTGTCGGT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTGCCACTTAGGGTTGAAGAAAACATCAATATTTTTCTGTCGGT  346

seq1  TTTTAATCTGCCAAAGAAGCTTCAAGTCTTTGCCTGGCACAAAGGAGTAC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTGCCAAAGAAGCTTCAAGTCTTTGCCTGGCACAAAGGAGTAC  396

seq1  TTCCACTTGAACATTTGAAGATAGCAAGCCATTCATTCCTCACCAATTCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTGAACATTTGAAGATAGCAAGCCATTCATTCCTCACCAATTCA  446

seq1  ACCACTCTGGGGTATGCATATTATGACAGAGTGAAAGTACGCAATGATGG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTGGGGTATGCATATTATGACAGAGTGAAAGTACGCAATGATGG  496

seq1  GTCCTTGCTTCTCTTCAATGTCAAGAAGAAAGACGCAGGGCTTTATACCC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGCTTCTCTTCAATGTCAAGAAGAAAGACGCAGGGCTTTATACCC  546

seq1  TACGAACCGTATCTGTTGATTTGATATCAGAATGGGCCATTATTGACCTC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAACCGTATCTGTTGATTTGATATCAGAATGGGCCATTATTGACCTC  596

seq1  CAAGTAAATAGTAAGTGACTCTTTGCGACTCCTGGGTGAAGGTGGGGTTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAATAGTAAGTGACTCTTTGCGACTCCTGGGTGAAGGTGGGGTTT  646

seq1  ATTCTTCTCTGTATACCTAAGACAATGAGGATTGTACTGTGCCTTCCTCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTCTGTATACCTAAGACAATGAGGATTGTACTGTGCCTTCCTCC  696

seq1  CCTCTTTACTGTGTACTCTAACTTGGATTTGGGCATTTAGTAAAAGAGAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTACTGTGTACTCTAACTTGGATTTGGGCATTTAGTAAAAGAGAC  746

seq1  ACATCATGGGGGTAAACCAAAATACATCAGAAATATTGACCTAATGGAAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGGGGGTAAACCAAAATACATCAGAAATATTGACCTAATGGAAC  796

seq1  CTGTAGACAGTAGTATGGTAACTCAGTCCAATGATGTCAAACTCAGCTCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACAGTAGTATGGTAACTCAGTCCAATGATGTCAAACTCAGCTCA  846

seq1  GACTCTGGGGCCTCACGCTGAGTATGGCACCAAGCAAGCTTTGTGGCATT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGGGCCTCACGCTGAGTATGGCACCAAGCAAGCTTTGTGGCATT  896

seq1  GCTTGAATTTGAGTACCTGCTAGAGCTGACTGAAACAATGTGTCACTCTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAATTTGAGTACCTGCTAGAGCTGACTGAAACAATGTGTCACTCTG  946

seq1  CATCCAGGTCTTGGATCATGTGGAATAACTCAGTATCTGTCATGGCAATC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGGTCTTGGATCATGTGGAATAACTCAGTATCTGTCATGGCAATC  996

seq1  ATGGTTAGGCCAGGTCTTGTGGGCATCTCCTTTTCCTGAGATTTGGCATG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAGGCCAGGTCTTGTGGGCATCTCCTTTTCCTGAGATTTGGCATG  1046

seq1  AATAGAACAGCTGTTAAGGGTGGCCATACAACATACTGTCTGTACTGATA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACAGCTGTTAAGGGTGGCCATACAACATACTGTCTGTACTGATA  1096

seq1  ATTCTGAGACTTTATAGGAAAGTTTGTATCCCCAAAGAAAAATACATCAT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGACTTTATAGGAAAGTTTGTATCCCCAAAGAAAAATACATCAT  1146

seq1  TTTGGCAACTGCTTGTCCTCGGGAGTTCAGCCTAGGGAATTC  1178
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAACTGCTTGTCCTCGGGAGTTCAGCCTAGGGAATTC  1188